Catalogue Search | MBRL
Are you sure you want to remove the book from the shelf?
{{itemTitle}}
3,761
result(s) for
"Python software"
Sort by:
QuCAT: quantum circuit analyzer tool in Python
Quantum circuits constructed from Josephson junctions and superconducting electronics are key to many quantum computing and quantum optics applications. Designing these circuits involves calculating the Hamiltonian describing their quantum behavior. Here we present QuCAT, or 'Quantum Circuit Analyzer Tool', an open-source framework to help in this task. This open-source Python library features an intuitive graphical or programmatical interface to create circuits, the ability to compute their Hamiltonian, and a set of complimentary functionalities such as calculating dissipation rates or visualizing current flow in the circuit.
Journal Article
Pygrossone: a python-powered library for operating with the infinity computer arithmetic
The paper presents
PyGrossone
, a general-purpose and domain-independent Python library for the Infinity Computer arithmetic allowing one to work numerically with different infinite and infinitesimal numbers.
PyGrossone
offers a set of arithmetic, elementary, trigonometric, and differentiation modules to perform computations with
1
-based numbers (where
1
is a new infinite number introduced in the series of papers by the last author) with exact precision up to the machine one, since the computations on the Infinity Computer are numeric, not symbolic. Experiments have been conducted to evaluate the validity and performances of the proposed library. The availability of a Python-based implementation of the Infinity Computer arithmetic enables its exploitation in further research fields, such as artificial intelligence, scientific computing, and machine learning.
Journal Article
Pyphe, a python toolbox for assessing microbial growth and cell viability in high-throughput colony screens
Microbial fitness screens are a key technique in functional genomics. We present an all-in-one solution, pyphe, for automating and improving data analysis pipelines associated with large-scale fitness screens, including image acquisition and quantification, data normalisation, and statistical analysis. Pyphe is versatile and processes fitness data from colony sizes, viability scores from phloxine B staining or colony growth curves, all obtained with inexpensive transilluminating flatbed scanners. We apply pyphe to show that the fitness information contained in late endpoint measurements of colony sizes is similar to maximum growth slopes from time series. We phenotype gene-deletion strains of fission yeast in 59,350 individual fitness assays in 70 conditions, revealing that colony size and viability provide complementary, independent information. Viability scores obtained from quantifying the redness of phloxine-stained colonies accurately reflect the fraction of live cells within colonies. Pyphe is user-friendly, open-source and fully documented, illustrated by applications to diverse fitness analysis scenarios.
Journal Article
Practical Docker with Python : build, release and distribute your Python app with Docker
Learn the key differences between containers and virtual machines. Adopting a project based approach, this book introduces you to a simple Python application to be developed and containerized with Docker. After an introduction to containers and Docker you'll be guided through Docker installation and configuration. You'll also learn basic functions and commands used in Docker by running a simple container using Docker commands. The book then moves on to developing a Python based messaging bot using required libraries and virtual environment where you'll add Docker volumes to your project, ensuring your container data is safe. You'll create a database container and link your project to it and finally, bring up the bot-associated database all at once with Docker Compose.
Book
Collinearity-based Assembly Correction Tool GUI: Software for collinearity-based genome assembly correction
Genome assembly errors can have a profound effect on downstream analyses. Collinearity-based Assembly Correction Tool GUI is designed to rectify these errors by leveraging collinearity information between the assembled genome and a reference genome. Collinearity-based Assembly Correction Tool GUI provides a user-friendly interface for visualizing and manually correcting assembly errors. It supports various operations such as insertion, deletion, inversion, and swapping of contigs and chromosomes. The software automatically reclusters, relabels, and redraws the assembly after each modification, ensuring that users can easily track changes. Collinearity-based Assembly Correction Tool GUI is a robust tool designed to efficiently correct large-scale assembly errors in polyploid genomes, featuring advanced collinearity detection capabilities.
Journal Article
CLM App: Interlamellar Distance of Pearlite via CLM Revisited and Automated
Pearlitic (stainless) steel is used in automotive, aerospace, and other industries where high strength, hardness, and wear resistance are required. Its quality control can be performed using mechanical tests or by examining the lamellar microstructure, namely, determining interlamellar distance. One of the related approaches is the circular line method (CLM). This paper reviews the challenges to automate employment of the CLM using custom Python code in order to reduce human time costs during image-based quality assessment of pearlite. The goal is to perform intersection counting automatically once the human operator has configured the application and selected the locations of measuring circles. Performance assessment using manually processed data from some 465 images is performed. We divide the imaged pearlite microstructures into different “types” when the code performs well or, respectively, not so well. We conclude with possible extensions of the work presented here.
Journal Article