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\"This book is the first complete pictorial atlas of the world's ray fauna. It also provides general identifying features and distributional information about this iconic, but surprisingly poorly known, group of fishes\"-- Introduction.

The taxonomy of the enigmatic dark-mouth skate, Bathyraja arctowskii (Dollo, 1904), from the Southern Ocean was finally resolved after more than 100 years of ambiguity in 2021. This species is the smallest known species of the species-rich deep-water skate genus Bathyraja Ishiyama, 1958, which attains a total length of only about 61 cm and appears to be a wide-ranging and locally common species in the Southern Ocean. It differs from its congeners in the small adult size, dark-pigmented mouth cavity and underside of nasal curtain, lack of thorns on upper disc, as well as small and slender egg cases. Although the identity of this species was unambiguously clarified, the syntype egg cases could not be examined due to the COVID-19 pandemic. This examination has now become possible, and detailed data of the syntypes are provided in the present paper for the first time, together with hitherto unknown details of tooth, dermal denticle and thorn morphology. Furthermore, a lectotype and two paralectotypes are designated from the syntypes.

The identity of longnose skates (Dipturus-Zearaja-like skates) in the southern cone of the Americas has been a topic of extensive debate. This study employs a comprehensive analysis encompassing morphometrics, claspers, and the examination of COI and NADH2 sequence data to conclusively demonstrate the existence of only two longnose skate species in the southwestern Atlantic Ocean, extending south of 35 °S. Notably, Dipturus argentinensis Díaz de Astarloa, Mabragaña, Hanner and Figueroa, 2008 is revealed as a junior synonym of D. trachyderma (Krefft and Stehmann, 1975). Dipturus leptocaudus (Krefft and Stehmann, 1975) remains a northern valid species, but the specimen from the Falkland Islands (Malvinas) is recognized as a misidentification of D. trachyderma. Zearaja flavirostris (Philippi, 1892) and Dipturus lamillai Concha, Caira, Ebert and Pompert, 2019 are confirmed as junior synonyms of Zearaja brevicaudata (Marini, 1933). These findings contradict the previous report of six species within the same region over the last decade and underscore the presence of D. trachyderma and Z. brevicaudata south of 35 °S in the southwestern Atlantic. Additionally, this study notes the occurrence of only one specimen of Z. chilensis (Guichenot, 1848) in the Falkland Islands (Malvinas), suggesting an unusual frequency of this eastern Pacific skate in the southern Southwest Atlantic. Given that clasper morphology serves as the key distinguishing trait between Dipturus and Zearaja species, we provided a detailed analysis of the clasper characteristics of the Atlantic D. trachyderma, unequivocally situating it within Dipturus. The diagnostic characteristics include: (i) the presence of cartilage with the distal portion referred to as the sentinel, a feature absent in Zearaja; (ii) longer ventral terminal cartilage with the distal end referred to as the funnel, compared to Zearaja; and (iii) a non-spatulate distal lobe, a distinctive trait specific to Dipturus.

Members of the family Polyomaviridae have a circular double-stranded DNA genome that have been identified in various hosts ranging from mammals to arachnids. Here we report the identification and analysis of a complete genome sequence of a novel polyomavirus, Raja clavata polyomavirus (RcPyV1), from a cartilaginous fish, the thornback skate ( Raja clavata ). The genome sequence was determined using a metagenomics approach with an aim to provide baseline viral data in cartilaginous fish in different ecosystems. The RcPyV1 genome (4,195 nucleotides) had typical organization of polyomavirus, including early antigens (small T; Large T) encoded on one strand and late viral proteins (VP1; VP2) on the complementary strand. Maximum-likelihood phylogenetic analysis of the large T-antigen revealed that RcPyV1 clusters with a polyomavirus obtained from another cartilaginous fish, the guitarfish polyomavirus 1 (GfPyV1). These two share ~ 56% pairwise identity in LT and VP1 protein sequences. These analyses support the hypothesis that cartilaginous fishes have a specific lineage of polyomaviruses.

Despite increased focus on ascertaining the status of elasmobranch fish, the stock units for many species are uncertain. Data from mark-recapture tagging studies undertaken from 1959–2017 were analysed for 13 batoid species. Data were most comprehensive for skates (Rajidae), with 22,374 released and 3342 (14.9%) returned. Most data related to thornback ray Raja clavata , blonde ray R. brachyura and spotted ray R. montagui . Tags were generally returned from areas less than 50 km from their release, and usually from the ICES Division in which they were released. However, straight-line distances travelled of up to 910 km ( R. brachyura ) and 772 km ( R. clavata ) were recorded, highlighting that individual skates are capable of longer-distance movements. The maximum time at liberty was 16.6 years ( R. clavata ). Whilst mark-recapture data indicated that the current stock units used by ICES are broadly appropriate, southward movements of several skate species tagged off Northern Ireland (Division 6.a) to the Irish Sea (Division 7.a) were observed. In contrast, skates tagged in the Irish Sea and Bristol Channel (Division 7.f) generally remained in that area, with only occasional recaptures from Division 6.a.

DNA barcoding has been advanced as a promising tool to aid species identification and discovery through the use of short, standardized gene targets. Despite extensive taxonomic studies, for a variety of reasons the identification of fishes can be problematic, even for experts. DNA barcoding is proving to be a useful tool in this context. However, its broad application is impeded by the need to construct a comprehensive reference sequence library for all fish species. Here, we make a regional contribution to this grand challenge by calibrating the species discrimination efficiency of barcoding among 125 Argentine fish species, representing nearly one third of the known fauna, and examine the utility of these data to address several key taxonomic uncertainties pertaining to species in this region. Specimens were collected and morphologically identified during crusies conducted between 2005 and 2008. The standard BARCODE fragment of COI was amplified and bi-directionally sequenced from 577 specimens (mean of 5 specimens/species), and all specimens and sequence data were archived and interrogated using analytical tools available on the Barcode of Life Data System (BOLD; www.barcodinglife.org). Nearly all species exhibited discrete clusters of closely related haplogroups which permitted the discrimination of 95% of the species (i.e. 119/125) examined while cases of shared haplotypes were detected among just three species-pairs. Notably, barcoding aided the identification of a new species of skate, Dipturus argentinensis, permitted the recognition of Genypterus brasiliensis as a valid species and questions the generic assignment of Paralichthys isosceles. This study constitutes a significant contribution to the global barcode reference sequence library for fishes and demonstrates the utility of barcoding for regional species identification. As an independent assessment of alpha taxonomy, barcodes provide robust support for most morphologically based taxon concepts and also highlight key areas of taxonomic uncertainty worthy of reappraisal.

This study presents an extensive review of published and unpublished occurrence records of fish species in the Rio Negro drainage system within the Brazilian territory. The data was gathered from two main sources: 1) litterature compilations of species occurrence records, including original descriptions and revisionary studies; and 2) specimens verification at the INPA fish collection. The results reveal a rich and diversified ichthyofauna, with 1,165 species distributed in 17 orders (+ two incertae sedis), 56 families, and 389 genera. A large portion of the fish fauna (54.3% of the species) is composed of small-sized fishes < 10 cm in standard length. The main groups are Characiformes (454 species; 39.0%), Siluriformes (416; 35.7%), Gymnotiformes (105; 9.0%), and Cichliformes (102; 8.8%). The species composition differs between the main aquatic environments, such as: main channel (159 species), lakes (296), tributary rivers (596), small streams (234), seasonal beaches (186), and rapids (41). Part of the ichthyofauna is shared with adjacent basins, such as the Orinoco, rivers of the Guiana Shield, lower Solimões/Amazonas and upper Amazonas, which contributes to the remarkable ichthyofaunal diversity of the basin. A high rate of species endemism was observed in Characidae (24), Loricariidae (18), Cichlidae (18) and Callichthyidae (18), totalling 156 species (13.4%) endemic to the basin. An estimation of the species richness for the Rio Negro basin, considering 23 published references, resulted in 1,466 and 1,759 species (Jackknife 1 and 2, respectively), which seems reasonable when considering the large number of morphotypes left out of the present list and the low sampling effort in many areas of the basin. The results presented herein provide an additional tool for environmental managers and decision makers for conservation purposes of one of the richest and most well-preserved sub-basins of the Rio Amazonas system.

We examine the distribution, habitat association, morphometrics, meristics, and reproductive attributes of Amblyraja radiata over much of its Canadian range, Grand Banks to Arctic waters. It is distributed widely on the shelf and upper slope between 30 and 1288 m, reaching highest density in 100–400 m and occupying most available temperatures, between −1.0 and 8.8 °C, but concentrating in 1.6–3.5 °C. The maximum (and average) size decreases with increasing latitude in a continuum from 102 cm (55 cm) in the south, to 45 cm (20 cm) in the north. The proportion of mature fish increases with depth (40% at 0–50 m to 80% at 1150–1200 m) and temperature (35% at <0 °C to 55% at 5+ °C). The size at maturity decreases south to north; size at onset of maturity in males—43 (south) to 19 (north) cm, in females—49 to 23 cm; length at 50% maturity in males—74 to 44 cm, in females—66 to 40 cm. A. radiata maturity is also reflected in the rapid increase in the size of secondary sexual characteristics. Some meristics were consistent over the entire study area (spines near the spiracles and shoulders) while others varied with latitude (teeth rows, midline spines, spines near the eyes, % dorsal fins joined, spines between dorsal fins) or by fish length/maturity; the tail length/total length as a proportion of total length decreased during Stage 1 then increased at onset of maturity.

Egg capsules of the multispine skate, Bathyraja multispinis (Norman, 1937 ), described here for the first time, are larger (180 mm in length without horns) than those of any Bathyraja species from the South-west Atlantic Ocean (SWA). The capsule’s surface texture is relatively smooth by the presence of woven-like fibres. However, below the fibres, it is rough to the touch by the presence of longitudinal ridges and prickles of different shapes and sizes, ending in two or more digitiform projections. An identification key to all described Bathyraja egg capsules occurring in the SWA from 34° to 55°S is provided.

The current climate change scenario caused by anthropogenic activities has resulted in novel environmental pressures, increasing the occurrence and severity of fungal infections in the marine environment. Research on fungi in several taxonomic groups is widespread although not the case for elasmobranchs (sharks and rays). In this context, the aim of the present study was to screen the oral fungal microbiota present in artisanally captured Rioraja agassizii, a batoid that, although endangered, is highly fished and consumed worldwide. Oropharyngeal samples were obtained by swabbing and the samples were investigated using morphological and phenotypic methods by streaking on Sabouraud Dextrose Agar (SDA) and subculturing onto CHROMagar Candida (BD Difco) and CHROMagar Candida Plus (CHROMagarTM), as well as molecular techniques by amplification of the ITS1-5.8S-ITS2 ribosomal DNA region and a MALDI-TOF MS assessment. The findings indicated the presence of Candida parapsilosis (seven isolates), Candida duobushaemulonii (one isolate) and Rhodotorula mucilaginosa (three isolates), several of these reported for the first time in Rioraja agassizii. In addition, a 100% agreement between the MALDI-TOF results and partial ITS region sequencing was noted, demonstrating that the MALDI-TOF MS is a rapid and effective alternative for yeast identification in Rioraja agassizii isolates and potentially in other elasmobranch species. These findings highlight the need for further research to determine the potential impact on elasmobranch health, ecology, and commercial fisheries. Furthermore, this research is paramount in a One Health framework and may be employed to predict elasmobranch responses to an evolving ocean, keep healthy populations in check, monitor species, and assess the public health consequences of consuming these species.