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Antiretroviral treatment (ART) of HIV infection suppresses viral replication. Yet if ART is stopped, virus reemerges because of the persistence of infected cells. We evaluated the contribution of infected-cell proliferation and sites of proviral integration to HIV persistence. A total of 534 HIV integration sites (IS) and 63 adjacent HIV env sequences were derived from three study participants over 11.3 to 12.7 years of ART. Each participant had identical viral sequences integrated at the same position in multiple cells, demonstrating infected-cell proliferation. Integrations were overrepresented in genes associated with cancer and favored in 12 genes across multiple participants. Over time on ART, a greater proportion of persisting proviruses were in proliferating cells. HIV integration into specific genes may promote proliferation of HIV-infected cells, slowing viral decay during ART.

Network studies of human brain structural connectivity have identified a specific set of brain regions that are both highly connected and highly central. Recent analyses have shown that these putative hub regions are mutually and densely interconnected, forming a “rich club” within the human brain. Here we show that the set of pathways linking rich club regions forms a central high-cost, high-capacity backbone for global brain communication. Diffusion tensor imaging (DTI) data of two sets of 40 healthy subjects were used to map structural brain networks. The contributions to network cost and communication capacity of global cortico-cortical connections were assessed through measures of their topology and spatial embedding. Rich club connections were found to be more costly than predicted by their density alone and accounted for 40% of the total communication cost. Furthermore, 69% of all minimally short paths between node pairs were found to travel through the rich club and a large proportion of these communication paths consisted of ordered sequences of edges (“path motifs”) that first fed into, then traversed, and finally exited the rich club, while passing through nodes of increasing and then decreasing degree. The prevalence of short paths that follow such ordered degree sequences suggests that neural communication might take advantage of strategies for dynamic routing of information between brain regions, with an important role for a highly central rich club. Taken together, our results show that rich club connections make an important contribution to interregional signal traffic, forming a central high-cost, high-capacity backbone for global brain communication.

Many ecosystems are dominated by clonal plants. Among the most distinctive characteristics of clonal plants is their potential for clonal integration (i.e. the translocation of resources between interconnected ramets), suggesting that integration may play a role in their success. However, a general synthesis of effects of clonal integration on plant performance is lacking. We conducted a meta-analysis on the effects of clonal integration on biomass production and asexual reproduction of the whole clone, the recipient part (i.e. the part of a clone that imports resources) and the donor part (i.e. the part of a clone that exports resources). The final dataset contained 389 effect sizes from 84 studies covering 57 taxa. Overall, clonal integration increased performance of recipient parts without decreasing that of donor parts, and thus increased performance of whole clones. Among the studies and taxa considered, the benefits of clonal integration did not differ between two types of experimental approaches, between stoloniferous and rhizomatous growth forms, between directions of resource translocation (from younger to older ramet or vice versa), or among types of translocated resources (water, nutrients and carbohydrates). Clonal taxa with larger benefits of integration on whole-clone performance were not more invasive globally, but taxa in which recipient parts in unfavorable patches benefited more from integration were. Our results demonstrate general performance benefits of clonal integration, at least in the short term, and suggest that clonal integration contributes to the success of clonal plants.

Human attentional control is unrivaled. We recently proposed that adults depend on distinct frontoparietal and cinguloopercular networks for adaptive online task control versus more stable set control, respectively. During development, both experience-dependent evoked activity and spontaneous waves of synchronized cortical activity are thought to support the formation and maintenance of neural networks. Such mechanisms may encourage tighter \"integration\" of some regions into networks over time while \"segregating\" other sets of regions into separate networks. Here we use resting state functional connectivity MRI, which measures correlations in spontaneous blood oxygenation level-dependent signal fluctuations between brain regions to compare previously identified control networks between children and adults. We find that development of the proposed adult control networks involves both segregation (i.e., decreased short-range connections) and integration (i.e., increased long-range connections) of the brain regions that comprise them. Delay/disruption in the developmental processes of segregation and integration may play a role in disorders of control, such as autism, attention deficit hyperactivity disorder, and Tourette's syndrome.

Although the future often seems intangible, we can make it more concrete by imagining prospective events. Here, using functional MRI, we demonstrate a mechanism by which the ventromedial prefrontal cortex supports such episodic simulations, and thereby contributes to affective foresight: This region supports processes that ( i ) integrate knowledge related to the elements that constitute an episode and ( ii ) represent the episode’s emergent affective quality. The ventromedial prefrontal cortex achieves such integration via interactions with distributed cortical regions that process the individual elements. Its activation then signals the affective quality of the ensuing episode, which goes beyond the combined affective quality of its constituting elements. The integrative process further augments long-term retention of the episode, making it available at later time points. This mechanism thus renders the future tangible, providing a basis for farsighted behavior. Significance Decisions concerning the future are often informed by past experiences. However, in a complex world, we frequently have to make choices for prospective scenarios that we haven’t yet encountered. The present study demonstrates a critical role for the ventromedial prefrontal cortex in simulating what it may feel like to experience such future events. We show that this region contributes to integrating knowledge related to the elements that constitute the episode (e.g., the episode’s location and protagonists). Its activation then indicates the episode’s emergent or overall anticipated affective quality. By this process, the ventromedial prefrontal cortex fundamentally supports our ability to predict possible future affective states, a mechanism that can be flexibly used to augment future oriented decisions.

An extreme weather and climate event does not only mean that an extreme occurs at an individual point (station), but more generally it has a certain impacted area and duration, which means that it is a regional extreme event (REE). How to identify a REE is the basis for studies in this area. An objective identification technique for REE (OITREE), which is based on the model of “the string of candied fruits,” is proposed in this study. This technique consists of five steps: to select a daily index for individual points (stations), to partition natural daily abnormality belts, to distinguish the event’s temporal continuity, to establish an index system for regional events, and to judge extremity for regional events. In the index system developed specially for regional events, there are five single indices, namely extreme intensity, accumulated intensity, accumulated area, maximum impacted area and duration, as well as an integrated index and the spatial location. In this study, the proposed method was first applied to examine four types of REEs in China: heavy precipitation, drought, high temperature, and low temperature. Results show that the technique is skillful in identifying REEs, demonstrating the usefulness of the proposed method in detecting and studying of REEs and operational application.

Task preparation is a complex cognitive process that implements anticipatory adjustments to facilitate future task performance. Little is known about quantitative network parameters governing this process in humans. Using functional magnetic resonance imaging (fMRI) and functional connectivity measurements, we show that the large-scale topology of the brain network involved in task preparation shows a pattern of dynamic reconfigurations that guides optimal behavior. This network could be decomposed into two distinct topological structures, an error-resilient core acting as a major hub that integrates most of the network's communication and a predominantly sensory periphery showing more flexible network adaptations. During task preparation, core-periphery interactions were dynamically adjusted. Task-relevant visual areas showed a higher topological proximity to the network core and an enhancement in their local centrality and interconnectivity. Failure to reconfigure the network topology was predictive for errors, indicating that anticipatory network reconfigurations are crucial for successful task performance. On the basis of a unique network decoding approach, we also develop a general framework for the identification of characteristic patterns in complex networks, which is applicable to other fields in neuroscience that relate dynamic network properties to behavior.

Factors contributing to retroviral integration have been intractable because past studies have not precisely located genomic sites of proviruses in sufficient numbers for significant analysis. In this study, 903 murine leukemia virus (MLV) and 379 human immunodeficiency virus-1 (HIV-1) integrations in the human genome were mapped. The data showed that MLV preferred integration near the start of transcriptional units (either upstream or downstream) whereas HIV-1 preferred integration anywhere in the transcriptional unit but not upstream of the transcriptional start. Defining different integration site preferences for retroviruses will have important ramifications for gene therapy and may aid in our understanding of the factors directing the integration process.

There is virtually no systematic debate on the fundamentals of comparative research in the study of international regionalism. The field of research is very fragmented and there is a lack of interaction between EU studies and regionalism in the rest of the world. There is also a lack of communication between scholars from various theoretical standpoints and research traditions. Related to these two divides is the tension between idiographic and nomothetic methodologies. The purpose of this article is to contribute to the largely neglected debate on how to conduct and address three interrelated problems: a conceptual, a theoretical and a methodological one. Our claim is that the future of comparative regionalism should be one where old divides are bridged. This requires a combination of conceptual rigor, theoretical eclecticism, and sounder empirical research methods.

For a coherent and meaningful life, conscious self-representation is mandatory. Such explicit \"autonoetic consciousness\" is thought to emerge by retrieval of memory of personally experienced events (\"episodic memory\"). During episodic retrieval, functional imaging studies consistently show differential activity in medial prefrontal and medial parietal cortices. With positron-emission tomography, we here show that these medial regions are functionally connected and interact with lateral regions that are activated according to the degree of self-reference. During retrieval of previous judgments of Oneself, Best Friend, and the Danish Queen, activation increased in the left lateral temporal cortex and decreased in the right inferior parietal region with decreasing self-reference. Functionally, the former region was preferentially connected to medial prefrontal cortex, the latter to medial parietal. The medial parietal region may, then, be conceived of as a nodal structure in self-representation, functionally connected to both the right parietal and the medial prefrontal cortices. To determine whether medial parietal cortex in this network is essential for episodic memory retrieval with self-representation, we used transcranial magnetic stimulation over the region to transiently disturb neuronal circuitry. There was a decrease in the efficiency of retrieval of previous judgment of mental Self compared with retrieval of judgment of Other with transcranial magnetic stimulation at a latency of 160 ms, confirming the hypothesis. This network is strikingly similar to the network of the resting conscious state, suggesting that self-monitoring is a core function in resting consciousness.