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85 result(s) for "Richardson-Lucy"
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A pitfall in the reconstruction of fibre ODFs using spherical deconvolution of diffusion MRI data
Diffusion weighted (DW) MRI facilitates non-invasive quantification of tissue microstructure and, in combination with appropriate signal processing, three-dimensional estimates of fibrous orientation. In recent years, attention has shifted from the diffusion tensor model, which assumes a unimodal Gaussian diffusion displacement profile to recover fibre orientation (with various well-documented limitations), towards more complex high angular resolution diffusion imaging (HARDI) analysis techniques. Spherical deconvolution (SD) approaches assume that the fibre orientation density function (fODF) within a voxel can be obtained by deconvolving a ‘common’ single fibre response function from the observed set of DW signals. In practice, this common response function is not known a priori and thus an estimated fibre response must be used. Here the establishment of this single-fibre response function is referred to as ‘calibration’. This work examines the vulnerability of two different SD approaches to inappropriate response function calibration: (1) constrained spherical harmonic deconvolution (CSHD)—a technique that exploits spherical harmonic basis sets and (2) damped Richardson–Lucy (dRL) deconvolution—a technique based on the standard Richardson–Lucy deconvolution. Through simulations, the impact of a discrepancy between the calibrated diffusion profiles and the observed (‘Target’) DW-signals in both single and crossing-fibre configurations was investigated. The results show that CSHD produces spurious fODF peaks (consistent with well known ringing artefacts) as the discrepancy between calibration and target response increases, while dRL demonstrates a lower over-all sensitivity to miscalibration (with a calibration response function for a highly anisotropic fibre being optimal). However, dRL demonstrates a reduced ability to resolve low anisotropy crossing-fibres compared to CSHD. It is concluded that the range and spatial-distribution of expected single-fibre anisotropies within an image must be carefully considered to ensure selection of the appropriate algorithm, parameters and calibration. Failure to choose the calibration response function carefully may severely impact the quality of any resultant tractography. ► We compare two spherical deconvolution based fODF retrieval techniques. ► We examine fODF error under inappropriate response function calibration. ► CSHD produces errors as response and target diffusion profiles diverge. ► dRL is poor against low FA targets but adequate across white matter. ► Manuscript updated to cover orientational dependence of CSHD errors.
Deep Richardson–Lucy Deconvolution for Low-Light Image Deblurring
Images taken under the low-light condition often contain blur and saturated pixels at the same time. Deblurring images with saturated pixels is quite challenging. Because of the limited dynamic range, the saturated pixels are usually clipped in the imaging process and thus cannot be modeled by the linear blur model. Previous methods use manually designed smooth functions to approximate the clipping procedure. Their deblurring processes often require empirically defined parameters, which may not be the optimal choices for different images. In this paper, we develop a data-driven approach to model the saturated pixels by a learned latent map. Based on the new model, the non-blind deblurring task can be formulated into a maximum a posterior problem, which can be effectively solved by iteratively computing the latent map and the latent image. Specifically, the latent map is computed by learning from a map estimation network, and the latent image estimation process is implemented by a Richardson–Lucy (RL)-based updating scheme. To estimate high-quality deblurred images without amplified artifacts, we develop a prior estimation network to obtain prior information, which is further integrated into the RL scheme. Experimental results demonstrate that the proposed method performs favorably against state-of-the-art algorithms both quantitatively and qualitatively on synthetic and real-world images.
Star Image Prediction and Restoration under Dynamic Conditions
The star sensor is widely used in attitude control systems of spacecraft for attitude measurement. However, under high dynamic conditions, frame loss and smearing of the star image may appear and result in decreased accuracy or even failure of the star centroid extraction and attitude determination. To improve the performance of the star sensor under dynamic conditions, a gyroscope-assisted star image prediction method and an improved Richardson-Lucy (RL) algorithm based on the ensemble back-propagation neural network (EBPNN) are proposed. First, for the frame loss problem of the star sensor, considering the distortion of the star sensor lens, a prediction model of the star spot position is obtained by the angular rates of the gyroscope. Second, to restore the smearing star image, the point spread function (PSF) is calculated by the angular velocity of the gyroscope. Then, we use the EBPNN to predict the number of iterations required by the RL algorithm to complete the star image deblurring. Finally, simulation experiments are performed to verify the effectiveness and real-time of the proposed algorithm.
Deconvolution-based partial volume correction in Raclopride-PET and Monte Carlo comparison to MR-based method
In this work, we evaluated three iterative deconvolution algorithms and compared their performance to partial volume (PV) correction based on structural imaging in brain positron emission tomography (PET) using a database of Monte Carlo-simulated images. We limited our interest to quantitative radioligand PET imaging, particularly to 11C-Raclopride and striatal imaging. The studied deconvolution methods included Richardson–Lucy, reblurred Van Cittert, and reblurred Van Cittert with the total variation regularization. We studied the bias and variance of the regional estimates of binding potential (BP) values and the accuracy of regional TACs as a function of the applied image processing. The resolution/noise tradeoff in parametric BP images was addressed as well. The regional BP values and TACs obtained by deconvolution were almost as accurate than those by structural imaging-based PV correction (GTM method) when the ideal volumes of interests (VOIs) were used to extract TACs from the images. For deconvolution methods, the ideal VOIs were slightly eroded from the exact anatomical VOI to limit the bias due to tissue fraction effect which is not corrected for by deconvolution-based methods. For the GTM method, the ideal VOIs were the exact anatomical VOIs. The BP values and TACs by deconvolution were less affected by segmentation and registration errors than those with the GTM-based PV correction. The BP estimates and TACs with deconvolution-based PV correction were more accurate than BPs and TACs derived without PV correction. The parametric images obtained by the deconvolution-based PV correction showed considerably improved resolution with only slightly increased noise level compared to the case with no PV correction. The reblurred Van Cittert method was the best of the studied deconvolution methods. We conclude that the deconvolution is an interesting alternative to structural imaging-based PV correction as it leads to quantification results of similar accuracy, and it is less prone to registration and segmentation errors than structural imaging-based PV correction. Moreover, PV-corrected parametric images can be readily computed based on deconvolved dynamic images.
A modified damped Richardson–Lucy algorithm to reduce isotropic background effects in spherical deconvolution
Spherical deconvolution methods have been applied to diffusion MRI to improve diffusion tensor tractography results in brain regions with multiple fibre crossing. Recent developments, such as the introduction of non-negative constraints on the solution, allow a more accurate estimation of fibre orientations by reducing instability effects due to noise robustness. Standard convolution methods do not, however, adequately model the effects of partial volume from isotropic tissue, such as gray matter, or cerebrospinal fluid, which may degrade spherical deconvolution results. Here we use a newly developed spherical deconvolution algorithm based on an adaptive regularization (damped version of the Richardson–Lucy algorithm) to reduce isotropic partial volume effects. Results from both simulated and in vivo datasets show that, compared to a standard non-negative constrained algorithm, the damped Richardson–Lucy algorithm reduces spurious fibre orientations and preserves angular resolution of the main fibre orientations. These findings suggest that, in some brain regions, non-negative constraints alone may not be sufficient to reduce spurious fibre orientations. Considering both the speed of processing and the scan time required, this new method has the potential for better characterizing white matter anatomy and the integrity of pathological tissue.
Generalized Richardson-Lucy (GRL) for analyzing multi-shell diffusion MRI data
Spherical deconvolution is a widely used approach to quantify the fiber orientation distribution (FOD) from diffusion MRI data of the brain. The damped Richardson-Lucy (dRL) is an algorithm developed to perform robust spherical deconvolution on single-shell diffusion MRI data while suppressing spurious FOD peaks due to noise or partial volume effects. Due to recent progress in acquisition hardware and scanning protocols, it is becoming increasingly common to acquire multi-shell diffusion MRI data, which allows for the modelling of multiple tissue types beyond white matter. While the dRL algorithm could, in theory, be directly applied to multi-shell data, it is not optimised to exploit its information content to model the signal from multiple tissue types. In this work, we introduce a new framework based on dRL – dubbed generalized Richardson-Lucy (GRL) – that uses multi-shell data in combination with user-chosen tissue models to disentangle partial volume effects and increase the accuracy in FOD estimation. Further, GRL estimates signal fraction maps associated to each user-selected model, which can be used during fiber tractography to dissect and terminate the tracking without need for additional structural data. The optimal weighting of multi-shell data in the fit and the robustness to noise and to partial volume effects of GRL was studied with synthetic data. Subsequently, we investigated the performance of GRL in comparison to dRL and to multi-shell constrained spherical deconvolution (MSCSD) on a high-resolution diffusion MRI dataset from the Human Connectome Project and on an MRI dataset acquired at 3T on a clinical scanner. In line with previous studies, we described the signal of the cerebrospinal-fluid and of the grey matter with isotropic diffusion models, whereas four diffusion models were considered to describe the white matter. With a third dataset including small diffusion weightings, we studied the feasibility of including intra-voxel incoherent motion effects due to blood pseudo-diffusion in the modelling. Further, the reliability of GRL was demonstrated with a test-retest scan of a subject acquired at 3T. Results of simulations show that GRL can robustly disentangle different tissue types at SNR above 20 with respect to the non-weighted image, and that it improves the angular accuracy of the FOD estimation as compared to dRL. On real data, GRL provides signal fraction maps that are physiologically plausible and consistent with those obtained with MSCSD, with correlation coefficients between the two methods up to 0.96. When considering IVIM effects, a high blood pseudo-diffusion fraction is observed in the medial temporal lobe and in the sagittal sinus. In comparison to dRL and MSCSD, GRL provided sharper FODs and less spurious peaks in presence of partial volume effects, but the FOD reconstructions are also highly dependent on the chosen modelling of white matter. When performing fiber tractography, GRL allows to terminate fiber tractography using the signal fraction maps, which results in a better tract termination at the grey-white matter interface or at the outer cortical surface. In terms of inter-scan reliability, GRL performed similarly to or better than compared methods. In conclusion, GRL offers a new modular and flexible framework to perform spherical deconvolution of multi-shell data. •A generalized Richardson-Lucy (GRL) method to leverage multi-shell diffusion MRI data.•GRL improves the quality of the WM FOD estimation.•GRL can fit diffusion signals with models of choice – including DTI, DKI and NODDI.•GRL disentangle partial volume effects of WM with GM, CSF and others like IVIM.•GRL uses the signal fraction estimates to terminate the fiber tractography.
Accelerated Deconvolved Imaging Algorithm for 2D Multibeam Synthetic Aperture Sonar
High-accuracy level underwater acoustical surveying plays an important role in ocean engineering applications, such as subaqueous tunnel construction, oil and gas exploration, and resources prospecting. This novel imaging method is eager to break through the existing theory to achieve a higher accuracy level of surveying. Multibeam Synthetic Aperture Sonar (MBSAS) is a kind of underwater acoustical imaging theory that can achieve 3D high-resolution detecting and overcome the disadvantages of traditional imaging methods, such as Multibeam Echo Sounder (MBES) and Synthetic Aperture Sonar (SAS). However, the resolution in the across-track direction inevitably decreases with increasing range, limited by the beamwidth of the transducer array of MBES. Furthermore, the sidelobe problem is also a significant interference of imaging sonar that introduces image noise and false peaks, which reduces the accuracy of the underwater images. Therefore, we proposed an accelerated deconvolved MBSAS beamforming method that introduces exponential acceleration and vector extrapolation to improve the convergence velocity of the classical Richardson-Lucy (R-L) iteration. The method proposed achieves a narrow beamwidth with a high sidelobe ratio in a few iterations. It can be applied to actual engineering applications, which breaks through the limitation of the actual transducer array scale. Simulations, tank, and field experiments also demonstrate the feasibility and advantages of the method proposed. 3D high-accuracy level underwater acoustical surveying can be achieved through this 2D MBES transducer array system, which can be widely promoted in the field of underwater acoustical remote sensing.
A dual-band filter designed for retrieving both left- and right-tailed RTN distributions in an iterative deconvolution procedure
This paper proposes a dual-band filter design to alleviate a crucial ringing issue of the Richardson–Lucy deconvolution algorithm (RL-deconv). We found that the RL-deconv doesn’t work for an exponentially decaying tail due to the ringing. The reasons why we must handle this issue in the VLSI chip reliability design are: (1) the VLSI chip bit density has increased up to a 10 12 -bit scale, making the fail probability obey the long tail down to 10 –12 , and (2) the VLSI chip margin variations have become prominent, caused by atomic-level random behaviors. The tail for the variations caused margin variations to obey the Gamma distributions. Consequently, the tail of the VLSI chip margin distribution doesn’t follow the Gaussian distribution anymore. These backgrounds compel us to newly adopt the inverse problem methods to predict the tail distribution based on the deconvolution. As the tail gets longer, the element-wise misalignment becomes larger between the corresponding elements of the feedback gain and the objective of deconvolution, and this causes to more critical wrong element-wise amplification, leading to a ringing. We found that it is not sufficient to retrieve only the right tail because the left tail can no longer be ignored. The length of the left tail becomes long enough to influence the distribution after aging. To address this issue, this paper proposes a dual-band filter design for retrieving both left and right tails, which contributes to widening the alignment range of the feedback gain with the retrieving target in the RL-deconv iterative processes. It is found that the proposed technique reduces the RTN deconvolution error by 12-fold compared with the conventional one.
An Error Reduction Technique in Richardson-Lucy Deconvolution Method
An error reduction technique for Richardson-Lucy deconvolution (RL-deconv) is proposed. The deconvolution is indispensable technique for inversely analysing the SRAM fail-bit probability variations caused by the Random Telegraph Noise (RTN). The proposed technique reduces the phase difference between the two distributions of the deconvoluted RTN and the feedback-gain in the maximum likelihood (MLE) gradient iteration cycles. This avoids an unwanted positive feedback, resulting in a significant decrease in probability of undesired ringing occurrence. A quicker convergence benefit of the RL-deconv algorithm while avoiding the ringing is achieved. It has been demonstrated that the proposed technique reduces its relative deconvolution errors by 100 times compared with the conventional RL-deconv. This provides an increase in accuracy of the fail-bit-count prediction by over 2-orders of magnitude while accelerating its convergence speed by 33times of the conventional one.
Retrieval of Tree Height Percentiles over Rugged Mountain Areas via Target Response Waveform of Satellite Lidar
The retrieval of tree height percentiles from satellite lidar waveforms observed over mountainous areas is greatly challenging due to the broadening and overlapping of the ground return and vegetation return. To accurately represent the shape distributions of the vegetation and ground returns, the target response waveform (TRW) is resolved using a Richardson–Lucy deconvolution algorithm with adaptive iteration. Meanwhile, the ground return is identified as the TRW component within a 4.6 m ground signal extent above the end point of the TRW. Based on the cumulative TRW distribution, the height metrics of the energy percentiles of 25%, 50%, 75%, and 95% are determined using their vertical distances relative to the ground elevation in this study. To validate the proposed algorithm, we select the received waveforms of the Global Ecosystem Dynamics Investigation (GEDI) lidar over the Pahvant Mountains of central Utah, USA. The results reveal that the resolved TRWs closely resemble the actual target response waveforms from the coincident airborne lidar data, with the mean values of the coefficient of correlation, total bias, and root-mean-square error (RMSE) taking values of 0.92, 0.0813, and 0.0016, respectively. In addition, the accuracies of the derived height percentiles from the proposed algorithm are greatly improved compared with the conventional Gaussian decomposition method and the slope-adaptive waveform metrics method. The mean bias and RMSE values decrease by the mean values of 1.68 m and 2.32 m and 1.96 m and 2.72 m, respectively. This demonstrates that the proposed algorithm can eliminate the broadening and overlapping of the ground return and vegetation return and presents good potential in the extraction of forest structure parameters over rugged mountainous areas.