Explore the vast range of titles available.

Morphological plasticity of root systems is critically important for plant survival because it allows plants to optimize their capacity to take up water and nutrients from the soil environment. Here we show that a signaling module composed of nitrogen (N)-responsive CLE (CLAVATA3/ESR-related) peptides and the CLAVATA1 (CLV1) leucine-rich repeat receptor-like kinase is expressed in the root vasculature in Arabidopsis thaliana and plays a crucial role in regulating the expansion of the root system under N-deficient conditions. CLE1, -3, -4, and -7 were induced by N deficiency in roots, predominantly expressed in root pericycle cells, and their overexpression repressed the growth of lateral root primordia and their emergence from the primary root. In contrast, clv1 mutants showed progressive outgrowth of lateral root primordia into lateral roots under N-deficient conditions. The clv1 phenotype was reverted by introducing a CLV1 promoter-driven CLV1:GFP construct producing CLV1:GFP fusion proteins in phloem companion cells of roots. The overaccumulation of CLE2, -3, -4, and -7 in clv1 mutants suggested the amplitude of the CLE peptide signals being feedback-regulated by CLV1. When CLE3 was overexpressed under its own promoter in wild-type plants, the length of lateral roots was negatively correlated with increasing CLE3 mRNA levels; however, this inhibitory action of CLE3 was abrogated in the clv1 mutant background. Our findings identify the N-responsive CLE-CLV1 signaling module as an essential mechanism restrictively controlling the expansion of the lateral root system in N-deficient environments.

One of the most striking examples of plant developmental plasticity to changing environmental conditions is the modulation of root system architecture (RSA) in response to nitrate supply. Despite the fundamental and applied significance of understanding this process, the molecular mechanisms behind nitrate-regulated changes in developmental programs are still largely unknown. Small RNAs (sRNAs) have emerged as master regulators of gene expression in plants and other organisms. To evaluate the role of sRNAs in the nitrate response, we sequenced sRNAs from control and nitrate-treated Arabidopsis seedlings using the 454 sequencing technology. miR393 was induced by nitrate in these experiments. miR393 targets transcripts that code for a basic helix-loop-helix (bHLH) transcription factor and for the auxin receptors TIR1, AFB1, AFB2, and AFB3. However, only AFB3 was regulated by nitrate in roots under our experimental conditions. Analysis of the expression of this miR393/AFB3 module, revealed an incoherent feed-forward mechanism that is induced by nitrate and repressed by N metabolites generated by nitrate reduction and assimilation. To understand the functional role of this N-regulatory module for plant development, we analyzed the RSA response to nitrate in AFB3 insertional mutant plants and in miR393 overexpressors. RSA analysis in these plants revealed that both primary and lateral root growth responses to nitrate were altered. Interestingly, regulation of RSA by nitrate was specifically mediated by AFB3, indicating that miR393/AFB3 is a unique N-responsive module that controls root system architecture in response to external and internal N availability in ARABIDOPSIS:

Background and Scope Because of the crucial role coarse roots (>2 mm diameter) play in plant functions and terrestrial ecosystems, detecting and quantifying the size, architecture, and biomass of coarse roots are important. Traditional excavation methods are labor intensive and destructive, with limited quantification and repeatability of measurements over time. As anondestructive geophysical tool for delineating buried features in shallow subsurface, ground penetrating radar (GPR) has been applied for coarse root detection since 1999. This article reviews the state-ofknowledge of coarse root detection and quantification using GPR, and discusses its potentials, constraints, possible solutions, and future outlooks. Some useful suggestions are provided that can guide future studies in this field. Conclusions The feasibility and accuracy of coarse root investigation by GPR have been tested in various site conditions (mostly in controlled conditions or within plantations) and for different plant species (mostly tree root systems). Thus far, single coarse root identification and coarse root system mapping have been conducted using GPR, including roots under pavements in urban environment. Coarse root diameter and biomass have been estimated from indexes extracted from root GPR radargrams. Coarse root development can be observed by repeated GPR scanning over time. Successful GPR-based coarse root investigation is site specific, and only under suitable conditions can reliable measurements be accomplished. The best quality of root detection by GPR is achieved in well-drained and electrically-resistive soils (such as sands) under dry conditions. Numerous factors such as local soil conditions, root electromagnetic properties, and GPR antenna frequency can impact the reliability and accuracy of GPR detection and quantification of coarse roots. As GPR design, data processing software, field data collection protocols, and root parameters estimation methods are continuously improved, this noninvasive technique could offer greater potential to study coarse roots.

Root system architecture (RSA) is an important developmental and agronomic trait that is regulated by various physical factors such as nutrients, water, microbes, gravity, and soil compaction as well as hormone-mediated pathways. Phytohormones act as internal mediators between soil and RSA to influence various events of root development, starting from organogenesis to the formation of higher order lateral roots (LRs) through diverse mechanisms. Apart from interaction with the external cues, root development also relies on the complex web of interaction among phytohormones to exhibit synergistic or antagonistic effects to improve crop performance. However, there are considerable gaps in understanding the interaction of these hormonal networks during various aspects of root development. In this review, we elucidate the role of different hormones to modulate a common phenotypic output, such as RSA in Arabidopsis and crop plants, and discuss future perspectives to channel vast information on root development to modulate RSA components.

Plant roots are required for the acquisition of water and nutrients, for responses to abiotic and biotic signals in the soil, and to anchor the plant in the ground. Controlling plant root architecture is a fundamental part of plant development and evolution, enabling a plant to respond to changing environmental conditions and allowing plants to survive in different ecological niches. Variations in the size, shape and surface area of plant root systems are brought about largely by variations in root branching. Much is known about how root branching is controlled both by intracellular signalling pathays and by environmental signals. Here, we will review this knowledge, with particular emphasis on recent advances in the field that open new and exciting areas of research.

The plant root system is important for the uptake of water and nutrients and the anchoring of plants in the soil. Lateral roots (LRs) contribute considerably to root system architecture. Their post-embryonic formation is regulated by hormones and environmental cues. The hormone cytokinin influences LR formation and growth in Arabidopsis thaliana on different levels by disturbing cell division activity and pattern formation. This includes inhibition of the first formative cell division of pericycle founder cells and inhibition of the outgrowth of young LR primordia. Mutant analysis revealed that the cytokinin biosynthesis genes IPT3 and IPT5 and all three cytokinin receptor genes (AHK2, AHK3, and CRE1/AHK4) act redundantly during LR initiation. Mutation of AHK2 and AHK3 caused increased auxin sensitivity of LR formation, corroborating the functional relevance of auxin–cytokinin interaction during LR formation. In contrast, LR development of cytokinin receptor mutants in response to other hormones was mostly similar to that of the wild type, which is consistent with separate response pathways. A noticeable exception was an increased sensitivity of LR elongation to brassinolide in ahk2 ahk3 mutants indicating antagonistic action of cytokinin and brassinosteroid. It is proposed that the multilevel redundancy of the cytokinin system in modulating LR formation reflects its role in mediating environmental cues.

BACKGROUND AND AIM: Recycled sources of phosphorus (P), such as struvite extracted from wastewater, have potential to substitute for more soluble manufactured fertilisers and help reduce the long-term threat to food security from dwindling finite reserves of phosphate rock (PR). This study aimed to determine whether struvite could be a component of a sustainable P fertiliser management strategy for arable crops. METHODS: A combination of laboratory experiments, pot trials and mathematical modelling of the root system examined the P release properties of commercial fertiliser-grade struvite and patterns of P uptake from a low-P sandy soil by two different crop types, in comparison to more soluble inorganic P fertilisers (di-ammonium phosphate (DAP) and triple super phosphate (TSP)). RESULTS: Struvite had greatly enhanced solubility in the presence of organic acid anions; buckwheat, which exudes a high level of organic acids, was more effective at mobilising struvite P than the low level exuder, spring wheat. Struvite granules placed with the seed did not provide the same rate of P supply as placed DAP granules for early growth of spring wheat, but gave equivalent rates of P uptake, yield and apparent fertiliser recovery at harvest, even though only 26 % of struvite granules completely dissolved. Fertiliser mixes containing struvite and DAP applied to spring wheat have potential to provide both optimal early and late season P uptake and improve overall P use efficiency. CONCLUSIONS: We conclude that the potential resource savings and potential efficiency benefits of utilising a recycled slow release fertiliser like struvite offers a more sustainable alternative to only using conventional, high solubility, PR-based fertilisers.

Due in part to recent progress in root genetics and genomics, increasing attention is being devoted to root system architecture (RSA) for the improvement of drought tolerance. The focus is generally set on deep roots, expected to improve access to soil water resources during water deficit episodes. Surprisingly, our quantitative understanding of the role of RSA in the uptake of soil water remains extremely limited, which is mainly due to the inherent complexity of the soil–plant continuum. Evidently, there is a need for plant biologists and hydrologists to develop together their understanding of water movement in the soil–plant system. Using recent quantitative models coupling the hydraulic behaviour of soil and roots in an explicit 3D framework, this paper illustrates that the contribution of RSA to root water uptake is hardly separable from the hydraulic properties of the roots and of the soil. It is also argued that the traditional view that either the plant or the soil should be dominating the patterns of water extraction is not generally appropriate for crops growing with a sub-optimal water supply. Hopefully, in silico experiments using this type of model will help explore how water fluxes driven by soil and plant processes affect soil water availability and uptake throughout a growth cycle and will embed the study of RSA within the domains of root hydraulic architecture and sub-surface hydrology.

BACKGROUND AND AIMS: Tree root system structure and development are difficult to assess and poorly understood in natural conditions because of soil heterogeneity and the difficulty in extracting mature tree root systems without damaging them. The purpose of this study was to understand root system development plasticity according to biological and physical parameters: species, tree age and size, soil material, water availability, slope angle, and climate. METHODS: Two hundred and forty-three mature trees from 12 species were uprooted from homogeneous French dikes fills. Root system structure (root number and size, root system span, depth and volume) was compared between two contrasting soil materials: fine and coarse. RESULTS: Tree species had little influence on root system structure: all root system types and root size could be found for most of the species according to site conditions. Heart root systems were limited to fine material while mixed and tap root systems were found on coarse material. In coarse materials, trees developed few but rather large roots (>5 cm in diameter and >4 m in length). In fine materials, root systems had three times more roots but they were 40 % smaller and shorter. Roots were 20 % more numerous and 65 % larger on the downslope side due to water availability at dike or riverbank toe. CONCLUSION: Root system structure was mainly influenced by soil material and water availability and far less by tree species. Tree root systems are opportunistic in developing in the direction where water and nutrients are plentiful: whatever the species, predicting its dimensions and structure requires a thorough investigation of soil and other environmental conditions. This study gives a new insight in root development: it will help predict tree root growth in various environments and particularly on dikes.

AIMS: Small scale root-pore interactions require validation of their impact on effective hydraulic processes at the field scale. Our objective was to develop an interpretative framework linking root effects on macroscopic pore parameters with knowledge at the rhizosphere scale. METHODS: A field experiment with twelve species from different families was conducted. Parameters of Kosugi’s pore size distribution (PSD) model were determined inversely from tension infiltrometer data. Measured root traits were related to pore variables by regression analysis. A pore evolution model was used to analyze if observed pore dynamics followed a diffusion like process. RESULTS: Roots essentially conditioned soil properties at the field scale. Rooting densities higher than 0.5 % of pore space stabilized soil structure against pore loss. Coarse root systems increased macroporosity by 30 %. Species with dense fine root systems induced heterogenization of the pore space and higher micropore volume. We suggested particle re-orientation and aggregate coalescence as main underlying processes. The diffusion type pore evolution model could only partially capture the observed PSD dynamics. CONCLUSIONS: Root systems differing in axes morphology induced distinctive pore dynamics. Scaling between these effective hydraulic impacts and processes at the root-pore interface is essential for plant based management of soil structure.