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"Rubiaceae"
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Corrigendum: Xu D, Li L, Zhang B, Song Z (2026) Morphological and molecular evidence support the inclusion of Mycetia hainanensis in Mouretia (Rubiaceae). PhytoKeys 270: 273–288. https://doi.org/10.3897/phytokeys.270.180324
2026
In our recent work (Xu et al. 2026), we failed to directly cite the basionym when publishing the new combination Mouretia hainanensis . This omission renders the combination nomenclaturally invalid, as it is contrary to Art. 41.5 of the International Code of Nomenclature (Turland et al. 2025). We provide a formal correction below. Mouretia hainanensis (H.S.Lo) Z.Q.Song & D.X.Xu, comb. nov. Basionym. Mycetia hainanensis H.S.Lo, Guihaia 11 (2): 112. 1991. Type. China • Hainan Province, Ledong County, Jianfeng [Jianfengling], Tianchi, in valley, 25 April 1982, Q. Huang 820455 (holotype: IBSC0590313!).
Journal Article
Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis
2021
Plant genomes remain highly fragmented and are often characterized by hundreds to thousands of assembly gaps. Here, we report chromosome-level reference and phased genome assembly of
Ophiorrhiza pumila
, a camptothecin-producing medicinal plant, through an ordered multi-scaffolding and experimental validation approach. With 21 assembly gaps and a contig N50 of 18.49 Mb,
Ophiorrhiza
genome is one of the most complete plant genomes assembled to date. We also report 273 nitrogen-containing metabolites, including diverse monoterpene indole alkaloids (MIAs). A comparative genomics approach identifies strictosidine biogenesis as the origin of MIA evolution. The emergence of strictosidine biosynthesis-catalyzing enzymes precede downstream enzymes’ evolution post γ whole-genome triplication, which occurred approximately 110 Mya in
O. pumila
, and before the whole-genome duplication in
Camptotheca acuminata
identified here. Combining comparative genome analysis, multi-omics analysis, and metabolic gene-cluster analysis, we propose a working model for MIA evolution, and a pangenome for MIA biosynthesis, which will help in establishing a sustainable supply of camptothecin.
Ophiorrhiza pumila
is a medicinal plant that can produce the anti-cancer monoterpene indole alkaloid (MIA) camptothecin. Here, the authors report its genome assembly and propose a working model for MIA evolution and biosynthesis through comparative genomics, synteny, and metabolic gene cluster analyses.
Journal Article
Genus Ophiorrhiza: A Review of Its Distribution, Traditional Uses, Phytochemistry, Biological Activities and Propagation
by
Arbain, Dayar
,
Susanti, Deny
,
Shaari, Siti Syazwani
in
Animals
,
Antiviral drugs
,
bioactive molecules
2020
Almost 50 species of Ophiorrhiza plants were reviewed in this work and the main objective is to critically analyse their distribution, phytochemical content, biological activity, and propagation. Moreover, the information would be useful in promoting the relevant uses of the plant, especially in the medicinal fields based on in vitro and in vivo studies. To this end, scientific sources, including theses, PubMed, Google Scholar, International Islamic University Malaysia IIUM EBSCO, PubChem, and Elsevier, were accessed for publications regarding the Ophiorrhiza genus in this review. Scientific literature regarding the Ophiorrhiza plants revealed their wide distribution across Asia and the neighbouring countries, whereby they were utilised as traditional medicine to treat various diseases. In particular, various active compounds, such as alkaloids, flavonoids, and terpenoids, were reported in the plant. Furthermore, the Ophiorrhiza species showed highly diverse biological activities, such as anti-cancer, antiviral, antimicrobial, and more. The genus propagation reported could produce a high quality and quantity of potent anticancer compound, namely camptothecin (CPT). Hence, it is believed that the relevant uses of natural compounds present in the plants can replace the existing crop of synthetic anticancer drugs associated with a multitude of unbearable side effects. Additionally, more future studies on the Ophiorrhiza species should be undertaken to establish the links between its traditional uses, active compounds, and pharmacological activities reported.
Journal Article
Tracing the Impact of the Andean Uplift on Neotropical Plant Evolution
by
Tiffney, Bruce H.
,
Nylander, Johan A. A.
,
Persson, Claes
in
Andes region
,
Biodiversity
,
Biogeography
2009
Recent phylogenetic studies have revealed the major role played by the uplift of the Andes in the extraordinary diversification of the Neotropical flora. These studies, however, have typically considered the Andean uplift as a single, time-limited event fostering the evolution of highland elements. This contrasts with geological reconstructions indicating that the uplift occurred in discrete periods from west to east and that it affected different regions at different times. We introduce an approach for integrating Andean tectonics with biogeographic reconstructions of Neotropical plants, using the coffee family (Rubiaceae) as a model group. The distribution of this family spans highland and montane habitats as well as tropical lowlands of Central and South America, thus offering a unique opportunity to study the influence of the Andean uplift on the entire Neotropical flora. Our results suggest that the Rubiaceae originated in the Paleotropics and used the boreotropical connection to reach South America. The biogeographic patterns found corroborate the existence of a long-lasting dispersal barrier between the Northern and Central Andes, the \"Western Andean Portal.\" The uplift of the Eastern Cordillera ended this barrier, allowing dispersal of boreotropical lineages to the South, but gave rise to a huge wetland system (\"Lake Pebas\") in western Amazonia that prevented in situ speciation and floristic dispersal between the Andes and Amazonia for at least 6 million years. Here, we provide evidence of these events in plants.
Journal Article
Kupeantha (Coffeeae, Rubiaceae), a new genus from Cameroon and Equatorial Guinea
2018
Two new coffee relatives (tribe Coffeeae, Rubiaceae), discovered during botanical expeditions to Cameroon, are examined for generic placement, and the placement of three previously known species (Argocoffeopsis fosimondi, A. spathulata and Calycosiphonia pentamera) is reinvestigated using plastid sequence (accD-psa1, rpl16, trnL-F) and morphological data. Seed biochemistry of the new species and pollen micromorphology (only one of the two species) are also studied. Based on the plastid sequence data, the new taxa are nested in a well-supported monophyletic group that includes Argocoffeopsis and Calycosiphonia. Within this clade, three well-supported subclades are recovered that are morphologically easy to diagnose: (1) Calycosiphonia (excluding C. pentamera), (2) Argocoffeopsis (excluding A. fosimondi and A. spathulata), and (3) a clade including the above excluded species, in addition to the new species. Based on the results, Kupeantha, a new genus of five species, is described, including two new Critically Endangered taxa from the Highlands of Cameroon: Kupeantha ebo and K. kupensis. Phytochemical analysis of Kupeantha seeds reveals compounds assigned as hydroxycinnamic acid derivatives, amino acids and ent-kaurane diterpenoids; caffeine was not detected. Kupeantha is the first new genus described in tribe Coffeeae in 40 years.
Journal Article
Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae
by
Rydin, Catarina
,
Wikström, Niklas
,
Razafimandimbison, Sylvain G.
in
Biology and Life Sciences
,
Botanical research
,
Cell nuclei
2024
In this study of evolutionary relationships in the subfamily Rubioideae (Rubiaceae), we take advantage of the off-target proportion of reads generated via previous target capture sequencing projects based on nuclear genomic data to build a plastome phylogeny and investigate cytonuclear discordance. The assembly of off-target reads resulted in a comprehensive plastome dataset and robust inference of phylogenetic relationships, where most intratribal and intertribal relationships are resolved with strong support. While the phylogenetic results were mostly in agreement with previous studies based on plastome data, novel relationships in the plastid perspective were also detected. For example, our analyses of plastome data provide strong support for the SCOUT clade and its sister relationship to the remaining members of the subfamily, which differs from previous results based on plastid data but agrees with recent results based on nuclear genomic data. However, several instances of highly supported cytonuclear discordance were identified across the Rubioideae phylogeny. Coalescent simulation analysis indicates that while ILS could, by itself, explain the majority of the discordant relationships, plastome introgression may be the better explanation in some cases. Our study further indicates that plastomes across the Rubioideae are, with few exceptions, highly conserved and mainly conform to the structure, gene content, and gene order present in the majority of the flowering plants.
Journal Article
Physiological, Biochemical, and Transcriptomic Responses of Neolamarckia cadamba to Aluminum Stress
2020
Aluminum is the most abundant metal of the Earth’s crust accounting for 7% of its mass, and release of toxic Al3+ in acid soils restricts plant growth. Neolamarckia cadamba, a fast-growing tree, only grows in tropical regions with acidic soils. In this study, N. cadamba was treated with high concentrations of aluminum under acidic condition (pH 4.5) to study its physiological, biochemical, and molecular response mechanisms against high aluminum stress. High aluminum concentration resulted in significant inhibition of root growth with time in N. cadamba. The concentration of Al3+ ions in the root tip increased significantly and the distribution of absorbed Al3+ was observed in the root tip after Al stress. Meanwhile, the concentration of Ca, Mg, Mn, and Fe was significantly decreased, but P concentration increased. Aluminum stress increased activities of antioxidant enzymes such as superoxide dismutase (SOD), catalase from micrococcus lysodeiktic (CAT), and peroxidase (POD) in the root tip, while the content of MDA was decreased. Transcriptome analysis showed 37,478 differential expression genes (DEGs) and 4096 GOs terms significantly associated with treatments. The expression of genes regulating aluminum transport and abscisic acid synthesis was significantly upregulated; however, the genes involved in auxin synthesis were downregulated. Of note, the transcripts of several key enzymes affecting lignin monomer synthesis in phenylalanine pathway were upregulated. Our results shed light on the physiological and molecular mechanisms of aluminum stress tolerance in N. cadamba.
Journal Article
Eumachiabrevipedunculata (Rubiaceae, Palicoureeae), a new species from Yunnan, China
2025
is a newly-identified species of the tribe Palicoureeae of Rubiaceae from Yunnan, China. It is morphologically similar to
, but differs by its smaller stipules, shorter petioles, smaller leaf blades, reduced inflorescences with shorter peduncles, axes and pedicels, longer calyx lobes, yellow-green flowers with shorter corolla tubes and shorter anthers. This species is widely found in southern Yunnan, but has long been misidentified as
. We clarify its taxonomic status and provide a description and illustration here.
Journal Article
Spiradiclisscorpiura (Rubiaceae), a new species from Guangxi, China
2025
(Rubiaceae), a new calcareous species found in Guangxi, China, is described and illustrated. This new species is similar to
,
, and
in having pubescent stems and subglobose capsules, but it is easily distinguished by its cincinnous inflorescence and its triangular, 1-2 mm long, pubescent bracteoles. According to the IUCN criteria, it is considered Data Deficient (DD) until more information becomes available. Photographs, an illustration, a distribution map, and a comparative table with the most similar species are provided.
Journal Article
Changes in cambial activity are related to precipitation patterns in four tropical hardwood species grown in Indonesia
by
Yamagishi, Yusuke
,
Funada, Ryo
,
Marsoem, Sri Nugroho
in
Acacia - anatomy & histology
,
Acacia - growth & development
,
Acacia - physiology
2019
Premise Cambial activity in some tropical trees varies intra‐annually, with the formation of xylem rings. Identification of the climatic factors that regulate cambial activity is important for understanding the growth of such species. We analyzed the relationship between climatic factors and cambial activity in four tropical hardwoods, Acacia mangium, Tectona grandis, Eucalyptus urophylla, and Neolamarckia cadamba in Yogyakarta, Java Island, Indonesia, which has a rainy season (November–June) and a dry season (July–October). Methods Small blocks containing phloem, cambium, and xylem were collected from main stems in January 2014, October 2015 and October 2016, and examined with light microscopy for cambial cell division, fusiform cambial cells, and expanding xylem cells as evidence of cambial activity. Results During the rainy season, when precipitation was high, cambium was active. By contrast, during the dry season in 2015, when there was no precipitation, cambium was dormant. However, in October 2016, during the so‐called dry season, cambium was active, cell division was conspicuous, and a new xylem ring formation was initiated. The difference in cambial activity appeared to be related to an unusual pattern of precipitation during the typically dry months, from July to October, in 2016. Conclusions Our results indicate that low or absent precipitation for 3 to 4 months induces cessation of cambial activity and temporal periodicity of wood formation in the four species studied. By contrast, in the event of continuing precipitation, cambial activity in the same trees may continue throughout the year. The frequency pattern of precipitation appears to be an important determinant of wood formation in tropical trees.
Journal Article