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There is a critical need for sensitive remote sensing approaches to monitor the parameters governing photosynthesis, at the temporal scales relevant to their natural dynamics. The photochemical reflectance index (PRI) and chlorophyll fluorescence (F) offer a strong potential for monitoring photosynthesis at local, regional, and global scales, however the relationships between photosynthesis and solar induced F (SIF) on diurnal and seasonal scales are not fully understood. This study examines how the fine spatial and temporal scale SIF observations relate to leaf level chlorophyll fluorescence metrics (i.e., PSII yield, YII and electron transport rate, ETR), canopy gross primary productivity (GPP), and PRI. The results contribute to enhancing the understanding of how SIF can be used to monitor canopy photosynthesis. This effort captured the seasonal and diurnal variation in GPP, reflectance, F, and SIF in the O2A (SIFA) and O2B (SIFB) atmospheric bands for corn (Zea mays L.) at a study site in Greenbelt, MD. Positive linear relationships of SIF to canopy GPP and to leaf ETR were documented, corroborating published reports. Our findings demonstrate that canopy SIF metrics are able to capture the dynamics in photosynthesis at both leaf and canopy levels, and show that the relationship between GPP and SIF metrics differs depending on the light conditions (i.e., above or below saturation level for photosynthesis). The sum of SIFA and SIFB (SIFA+B), as well as the SIFA+B yield, captured the dynamics in GPP and light use efficiency, suggesting the importance of including SIFB in monitoring photosynthetic function. Further efforts are required to determine if these findings will scale successfully to airborne and satellite levels, and to document the effects of data uncertainties on the scaling.

Recent progress in observing sun-induced Chl fluorescence (SIF) provides an unprecedented opportunity to advance photosynthesis research in natural environments. However, we still lack an analytical framework to guide SIF studies and integration with the well-developed active fluorescence approaches. Here, we derive a set of coupled fundamental equations to describe the dynamics of SIF and its relationship with C₃ and C₄ photosynthesis. These equations show that, although SIF is dynamically as complex as photosynthesis, the measured SIF simplifies photosynthetic modeling from the perspective of light reactions by integrating over the dynamic complexities of photosynthesis. Specifically, the measured SIF contains direct information about the actual electron transport from photosystem II to photosystem I, giving a quantifiable link between light and dark reactions. With much-reduced requirements on inputs and parameters, the light-reactions-centric, SIF-based biophysical model complements the traditional, dark-reactions-centric biochemical model of photosynthesis. The SIF–photosynthesis relationship, however, is nonlinear. This is because photosynthesis saturates at high light whereas SIF has a stronger tendency to keep increasing, as fluorescence quantum yield has a relatively muted sensitivity to light levels. Successful applications of the SIF-based model of photosynthesis will depend on a predictive understanding of several previously underexplored physiological and biophysical processes. Advances can be facilitated by coordinated efforts in plant physiology, remote sensing, and eddy covariance flux observations.

Sun-induced chlorophyll fluorescence (SIF) is a radiation flux emitted by chlorophyll molecules in the red (RSIF) and far red region (FRSIF), and is considered as a potential indicator of the functional state of photosynthesis in remote sensing applications. Recently, ground studies and space observations have demonstrated a strong empirical linear relationship between FRSIF and carbon uptake through photosynthesis (GPP, gross primary production). In this study, we investigated the potential of RSIF and FRSIF to represent the functional status of photosynthesis at canopy level on a wheat crop. RSIF and FRSIF were continuously measured in the O2-B (SIF687) and O2-A bands (SIF760) at a high frequency rate from a nadir view at a height of 21 m, simultaneously with carbon uptake using eddy covariance (EC) techniques. The relative fluorescence yield (Fyield) and the photochemical yield were acquired at leaf level using active fluorescence measurements. SIF was normalized with photosynthetically active radiation (PAR) to derive apparent spectral fluorescence yields (ASFY687, ASFY760). At the diurnal scale, we found limited variations of ASFY687 and ASFY760 during sunny days. We also did not find any link between Fyield and light use efficiency (LUE) derived from EC, which would prevent SIF from indicating LUE changes. The coefficient of determination ( r 2 ) of the linear regression between SIF and GPP is found to be highly variable, depending on the emission wavelength, the time scale of observation, sky conditions, and the phenological stage. Despite its photosystem II (PSII) origin, SIF687 correlates less than SIF760 with GPP in any cases. The strongest SIF–GPP relationship was found for SIF760 during canopy growth. When canopy is in a steady state, SIF687 and SIF760 are almost as effective as PAR in predicting GPP. Our results imply some constraints in the use of simple linear relationships to infer GPP from SIF, as they are expected to be better predictive with far red SIF for canopies with a high dynamic range of green biomass and a low LUE variation range.

Photosynthesis drives terrestrial carbon uptake, yet its diurnal dynamics remain poorly resolved due to the sparse availability of flux towers and the coarse spatial resolution of current satellite observations. Solar-induced chlorophyll fluorescence (SIF) provides a direct proxy of carbon uptake, but the existing global monthly mean diurnal total canopy SIF product is limited to 0.5° resolution. We developed a random forest-based downscaling framework to generate a global monthly mean hourly SIF dataset (SIFtotal_01) at 0.1° resolution for 2000–2022. When validated against eddy-covariance-based gross primary productivity (GPP) data, SIFtotal_01 showed a strong correlation (R2 = 0.81) and reduced root mean square error when compared with SIFtotal (2.89→2.8 mW m−2 nm−1), providing notable gains in broadleaved forests (R2: 0.80→0.88 with a root mean square error of 2.32→1.81 mW m−2 nm−1). The SIFtotal_01 dataset revealed a distinct double-peak in the SIFtotal_01–GPP slope, reflecting widespread afternoon depression of photosynthesis, with normalized slopes declining from 1.03 in the morning to 0.98 in the afternoon. Soil moisture modulated this depression pattern, as the afternoon–morning SIFtotal_01 difference increased from 0.02 to 0.10 mW m−2 nm−1 across dry to wet years. Under water stress, SIF yield was more sensitive than absorbed photosynthetic active radiation (APAR), with a doubling of the afternoon–morning SIF yield difference (0.5→1.1 10−3 nm−1), while the afternoon–morning APAR difference showed a smaller change (−300→−180 kJ m−2). This study improves the potential for bridging observational gaps and constraining models offer valuable insights for fundamental and applied research in the analysis of ecosystem productivity, climate-carbon feedbacks, and vegetation stress.

Remote Sensing of Sun-Induced Chlorophyll Fluorescence (SIF) is a research field of growing interest because it offers the potential to quantify actual photosynthesis and to monitor plant status. New satellite missions from the European Space Agency, such as the Earth Explorer 8 FLuorescence EXplorer (FLEX) mission-scheduled to launch in 2022 and aiming at SIF mapping-and from the National Aeronautics and Space Administration (NASA) such as the Orbiting Carbon Observatory-2 (OCO-2) sampling mission launched in July 2014, provide the capability to estimate SIF from space. The detection of the SIF signal from airborne and satellite platform is difficult and reliable ground level data are needed for calibration/validation. Several commercially available spectroradiometers are currently used to retrieve SIF in the field. This study presents a comparison exercise for evaluating the capability of four spectroradiometers to retrieve SIF. The results show that an accurate far-red SIF estimation can be achieved using spectroradiometers with an ultrafine resolution (less than 1 nm), while the red SIF estimation requires even higher spectral resolution (less than 0.5 nm). Moreover, it is shown that the Signal to Noise Ratio (SNR) plays a significant role in the precision of the far-red SIF measurements.

The HyPlant imaging spectrometer is a high-performance airborne instrument consisting of two sensor modules. The DUAL module records hyperspectral data in the spectral range from 400–2500 nm, which is useful to derive biochemical and structural plant properties. In parallel, the FLUO module acquires data in the red and near infrared range (670–780 nm), with a distinctly higher spectral sampling interval and finer spectral resolution. The technical specifications of HyPlant FLUO allow for the retrieval of sun-induced chlorophyll fluorescence (SIF), a small signal emitted by plants, which is directly linked to their photosynthetic efficiency. The combined use of both HyPlant modules opens up new opportunities in plant science. The processing of HyPlant image data, however, is a rather complex procedure, and, especially for the FLUO module, a precise characterization and calibration of the sensor is of utmost importance. The presented study gives an overview of this unique high-performance imaging spectrometer, introduces an automatized processing chain, and gives an overview of the different processing steps that must be executed to generate the final products, namely top of canopy (TOC) radiance, TOC reflectance, reflectance indices and SIF maps.

• Solar-induced fluorescence (SIF) is highly relevant in mapping photosynthesis from remote-sensing platforms. This requires linking SIF to photosynthesis and understanding the role of nonphotochemical quenching (NPQ) mechanisms under field conditions. Hence, active and passive fluorescence were measured in Arabidopsis with altered NPQ in outdoor conditions. • Plants with mutations in either violaxanthin de-epoxidase (npq1) or PsbS protein (npq4) exhibited reduced NPQ capacity. Parallel measurements of NPQ, photosystem II efficiency, SIF and spectral reflectance (ρ) were conducted diurnally on one sunny summer day and two consecutive days during a simulated cold spell. • Results showed that both npq mutants exhibited higher levels of SIF compared to wild-type plants. Changes in reflectance were related to changes in the violaxanthin–antheraxanthin–zeaxanthin cycle and not to PsbS-mediated conformational changes. When plants were exposed to cold temperatures, rapid onset of photoinhibition strongly quenched SIF in all lines. • Using well-characterized Arabidopsis npq mutants, we showed for the first time the quantitative link between SIF, photosynthetic efficiency, NPQ components and leaf reflectance. We discuss the functional potential and limitations of SIF and reflectance measurements for estimating photosynthetic efficiency and NPQ in the field.

Solar-induced chlorophyll fluorescence (SIF) is essential for monitoring vegetation photosynthesis. The water vapor absorption band, the broadest absorption window, has a deeper absorption line than the O2-B band, providing significant potential for SIF retrieval; however, substantial variation in atmospheric water vapor column concentrations limits research on SIF retrieval using this band. This study evaluates seven common SIF retrieval algorithms, including sFLD, 3FLD, iFLD, pFLD, SFM, SVD, and DOAS, using simulated datasets under varying atmospheric water vapor concentrations, spectral resolution (SR), and signal-to-noise ratios (SNRs). Additionally, the SIF retrieval results from the H2O, O2-B, and O2-A absorption bands are compared and analyzed to explore the fluorescence retrieval potential of the water vapor band. Furthermore, the potential of commonly used spectrometers, including Ocean Optics QE Pro and ASD FieldSpec 3, for SIF retrieval using the water vapor absorption band was evaluated. The results were further validated using ground-based tower observations. The results show that sFLD consistently overestimates SIF in the water vapor band, limiting its reliability, while SFM performs best across varying conditions. In comparison, 3FLD and pFLD, along with SVD, are accurate at high resolutions but less effective at lower ones. iFLD performs relatively poorly overall, whereas DOAS excels in low SR retrievals. At the same time, our study also shows that the water vapor band offers higher accuracy in ground-based SIF retrieval compared to the O2-B band, demonstrating strong application potential and providing valuable references for selecting SIF retrieval algorithms.

The strong correlation between gross primary production (GPP) and sun-induced chlorophyll fluorescence (SIF) has been reported in many studies and is the basis of the SIF-based GPP estimation. However, GPP and SIF are not fully synchronous under various environmental conditions, which may destroy a stable GPP–SIF relationship. Therefore, exploring the difference between responses of GPP and SIF to the environment is essential to correctly understand the GPP–SIF relationship. As the common driver of GPP and SIF, the incident radiation could cause GPP and SIF to have similar responses to the environment, which may obscure the discrepancies in the responses of GPP and SIF to the other environmental variables, and further result in the ambiguity of the GPP–SIF relationship and uncertainties in the application of SIF. Therefore, we tried to exclude the dominant role of radiation in the responses of GPP and SIF to the environment based on the binning method, in which continuous tower-based SIF, satellite SIF, and eddy covariance GPP data from two growing seasons were used to investigate the differences in the responses of GPP and SIF to radiation, air temperature (Ta), and evaporation fraction (EF). We found that the following: (1) At both the site and satellite scales, there were divergences in the light response speeds between GPP and SIF which were affected by Ta and EF. (2) SIF and its light response curves were insensitive to EF and Ta compared to GPP, and the consistency in GPP and SIF light responses was gradually improved with the improvement of Ta and EF. (3) The dynamic slope values of the GPP–SIF relationship were mostly caused by the different sensitivities of GPP and SIF to EF and Ta. Our results highlighted that GPP and SIF were not highly consistent, having differences in environmental responses that further confused the GPP–SIF relationship, leading to complex SIF application.

We revisit the theory connecting chlorophyll a fluorescence to photosynthesis in the spatiotemporal context of remote sensing. Physical, physiological, and methodological factors are discussed, and a roadmap to future research presented.