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6,386
result(s) for
"Scattering angle"
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Realizing the AF4-UV-SAXS on-line coupling on protein and antibodies using high flux synchrotron radiation at the CoSAXS beamline, MAX IV
by
Wahlgren, Marie
,
Nilsson, Lars
,
Bolinsson, Hans
in
AF4 protein
,
AF4-UV-SAXS on-line coupling
,
AF4-UV-small angle X-ray scattering on-line coupling
2023
In this paper, we demonstrate the coupling of synchrotron small angle X-ray scattering (SAXS) to asymmetrical flow-field flow fractionation (AF4) for protein characterization. To the best of our knowledge, this is the first time AF4 is successfully coupled to a synchrotron for on-line measurements on proteins. This coupling has potentially high impact, as it opens the possibility to characterize individual constituents of sensitive and/or complex samples, not suited for separation using other techniques, and for low electron density samples where high X-ray flux is required, e.g., biomolecules and biologics. AF4 fractionates complex samples in native or close to native environment, with low shear forces and system surface area. Many orders of magnitude in size can be fractionated in one measurement, without having to reconfigure the experimental setup. We report AF4 fractionations with correlated UV and statistically adequate SAXS data of bovine serum albumin and a monoclonal antibody and evaluate SAXS data recorded for the two protein systems.
Graphical Abstract
Journal Article
Structural Characterization of Biomaterials by Means of Small Angle X-rays and Neutron Scattering (SAXS and SANS), and Light Scattering Experiments
by
Kiselev, Mikhail A.
,
Lombardo, Domenico
,
Calandra, Pietro
in
Biocompatible Materials - chemistry
,
Biocompatible Materials - metabolism
,
biomaterials characterization
2020
Scattering techniques represent non-invasive experimental approaches and powerful tools for the investigation of structure and conformation of biomaterial systems in a wide range of distances, ranging from the nanometric to micrometric scale. More specifically, small-angle X-rays and neutron scattering and light scattering techniques represent well-established experimental techniques for the investigation of the structural properties of biomaterials and, through the use of suitable models, they allow to study and mimic various biological systems under physiologically relevant conditions. They provide the ensemble averaged (and then statistically relevant) information under in situ and operando conditions, and represent useful tools complementary to the various traditional imaging techniques that, on the contrary, reveal more local structural information. Together with the classical structure characterization approaches, we introduce the basic concepts that make it possible to examine inter-particles interactions, and to study the growth processes and conformational changes in nanostructures, which have become increasingly relevant for an accurate understanding and prediction of various mechanisms in the fields of biotechnology and nanotechnology. The upgrade of the various scattering techniques, such as the contrast variation or time resolved experiments, offers unique opportunities to study the nano- and mesoscopic structure and their evolution with time in a way not accessible by other techniques. For this reason, highly performant instruments are installed at most of the facility research centers worldwide. These new insights allow to largely ameliorate the control of (chemico-physical and biologic) processes of complex (bio-)materials at the molecular length scales, and open a full potential for the development and engineering of a variety of nano-scale biomaterials for advanced applications.
Journal Article
An ensemble of flexible conformations underlies mechanotransduction by the cadherin–catenin adhesion complex
by
Weiss, Thomas M.
,
Alhanshali, Bashir M.
,
Stanley, Christopher B.
in
adherens junction
,
Adherens junctions
,
Adherens Junctions - chemistry
2019
The cadherin–catenin adhesion complex is the central component of the cell–cell adhesion adherens junctions that transmit mechanical stress from cell to cell. We have determined the nanoscale structure of the adherens junction complex formed by the α-catenin•β-catenin•epithelial cadherin cytoplasmic domain (ABE) using negative stain electron microscopy, small-angle X-ray scattering, and selective deuteration/small-angle neutron scattering. The ABE complex is highly pliable and displays a wide spectrum of flexible structures that are facilitated by protein-domain motions in α- and β-catenin. Moreover, the 107-residue intrinsically disordered N-terminal segment of β-catenin forms a flexible “tongue” that is inserted into α-catenin and participates in the assembly of the ABE complex. The unanticipated ensemble of flexible conformations of the ABE complex suggests a dynamic mechanism for sensitivity and reversibility when transducing mechanical signals, in addition to the catch/slip bond behavior displayed by the ABE complex under mechanical tension. Our results provide mechanistic insight into the structural dynamics for the cadherin–catenin adhesion complex in mechanotransduction.
Journal Article
Elucidating the porous structure of aluminum adjuvants via in-situ small-angle scattering technique
by
Patton, Zoe E.
,
Heroux, Luke
,
Gillilan, Richard E.
in
Adjuvants
,
Adjuvants, Immunologic - chemistry
,
Adjuvants, Vaccine - chemistry
2025
Aluminum-based adjuvants are widely used in vaccine formulations due to their immunostimulatory properties and strong safety profile. Despite their effectiveness and safety, the exact mechanisms by which they enhance vaccine efficacy remain unclear. One proposed mechanism is that aluminum adjuvants form a depot that gradually releases antigens, thereby improving antigen uptake by antigen-presenting cells. This study investigates the porous structures of two commonly used aluminum adjuvants, aluminum hydroxide (AH) and aluminum phosphate (AP), using small-angle X-ray scattering (SAXS) and small-angle neutron scattering (SANS). Our measurements reveal that AH nanoparticles, with their needle-like morphology, form smaller, interconnected pores within the aggregated architecture. In contrast, AP nanoparticles, with a plate-like shape, form more discrete, isolated porous structures. Both adjuvants have pore sizes within the range of commonly used vaccine antigens, supporting the depot theory. Our findings also reveal that antigen retention is prolonged when the antigen size is comparable to the average pore size of the adjuvant. This study highlights the utility of SAXS and SANS for in-situ characterization of adjuvant porosity and provides insights into how nanoparticle morphology affects antigen retention and release. By elucidating these structural details, our research underscores the importance of porous structure in adjuvant function and offers potential pathways for improving vaccine formulations through tailored adjuvant design.
Journal Article
Multiscale X-ray study of Bacillus subtilis biofilms reveals interlinked structural hierarchy and elemental heterogeneity
by
Ghrayeb, Mnar
,
Wilsch-Bräuninger, Michaela
,
Bertinetti, Luca
in
Amyloidogenic Proteins - metabolism
,
Aquaporins
,
Bacillus subtilis
2022
Biofilms are multicellular microbial communities that encase themselves in an extracellular matrix (ECM) of secreted biopolymers and attach to surfaces and interfaces. Bacterial biofilms are detrimental in hospital and industrial settings, but they can be beneficial, for example, in agricultural as well as in food technology contexts. An essential property of biofilms that grants them with increased survival relative to planktonic cells is phenotypic heterogeneity, the division of the biofilm population into functionally distinct subgroups of cells. Phenotypic heterogeneity in biofilms can be traced to the cellular level; however, the molecular structures and elemental distribution across whole biofilms, as well as possible linkages between them, remain unexplored. Mapping X-ray diffraction across intact biofilms in time and space, we revealed the dominant structural features in Bacillus subtilis biofilms, stemming from matrix components, spores, and water. By simultaneously following the X-ray fluorescence signal of biofilms and isolated matrix components, we discovered that the ECM preferentially binds calcium ions over other metal ions, specifically, zinc, manganese, and iron. These ions, remaining free to flow below macroscopic wrinkles that act as water channels, eventually accumulate and may possibly lead to sporulation. The possible link between ECM properties, regulation of metal ion distribution, and sporulation across whole, intact biofilms unravels the importance of molecular-level heterogeneity in shaping biofilm physiology and development.
Journal Article
ForMAX – a beamline for multiscale and multimodal structural characterization of hierarchical materials
2024
The ForMAX beamline at the MAX IV Laboratory provides multiscale and multimodal structural characterization of hierarchical materials in the nanometre to millimetre range by combining small‐ and wide‐angle X‐ray scattering with full‐field microtomography. The modular design of the beamline is optimized for easy switching between different experimental modalities. The beamline has a special focus on the development of novel fibrous materials from forest resources, but it is also well suited for studies within, for example, food science and biomedical research. ForMAX is a new beamline at the MAX IV Laboratory, providing multiscale and multimodal structural characterization by combining small‐ and wide‐angle X‐ray scattering with full‐field tomographic imaging.
Journal Article
Scattering angle resolved optical coherence tomography measures morphological changes in Bacillus subtilis colonies
by
Chowdhury, Naail
,
Barauah, Vikram
,
Parsa, Shyon
in
Apoptosis
,
Bacillus subtilis
,
Backscattering
2022
An unmet need is recognized for early detection and diagnosis of neurological diseases. Many psychological markers emerge years after disease onset. Mitochondrial dysfunction and corresponding neurodegeneration occur before onset of large-scale cell and tissue pathology. Early detection of subcellular morphology changes could serve as a beacon for early detection of neurological diseases. This study is on bacterial colonies,
, which are similar in size to mitochondria.
This study investigates whether morphological changes can be detected in
using scattering angle resolved optical coherence tomography (SAR-OCT).
The SAR-OCT was applied to detect scattering angle distribution changes in
The rod-to-coccus shape transition of the bacteria was imaged, and the backscattering angle was analyzed by recording the distribution of the ratio of low- to medium angle scattering (L/M ratio).
orientation at different locations in colonies was analytically modeled and compared with SAR-OCT results.
Significant differences in the distribution of backscattering angle were observed in
transitioning from rod-to-coccus shapes. In
, the
-parameter of the Burr distribution of the SAR-OCT-derived L/M ratio was significantly smaller in coccus compared with rod-shaped bacteria. SAR-OCT-derived L/M ratio varied with bacterial position in the colony and is consistent with predicted orientations from previous studies.
Study results support the potential of utilizing SAR-OCT to detect bacterial morphological changes.
Journal Article
Investigating the missing‐wedge problem in small‐angle X‐ray scattering tensor tomography across real and reciprocal space
by
Tänzer, Torne
,
Erhart, Paul
,
Nielsen, Leonard C.
in
Data analysis
,
Datasets
,
Human performance
2024
Small‐angle‐scattering tensor tomography is a technique for studying anisotropic nanostructures of millimetre‐sized samples in a volume‐resolved manner. It requires the acquisition of data through repeated tomographic rotations about an axis which is subjected to a series of tilts. The tilt that can be achieved with a typical setup is geometrically constrained, which leads to limits in the set of directions from which the different parts of the reciprocal space map can be probed. Here, we characterize the impact of this limitation on reconstructions in terms of the missing wedge problem of tomography, by treating the problem of tensor tomography as the reconstruction of a three‐dimensional field of functions on the unit sphere, represented by a grid of Gaussian radial basis functions. We then devise an acquisition scheme to obtain complete data by remounting the sample, which we apply to a sample of human trabecular bone. Performing tensor tomographic reconstructions of limited data sets as well as the complete data set, we further investigate and validate the missing wedge problem by investigating reconstruction errors due to data incompleteness across both real and reciprocal space. Finally, we carry out an analysis of orientations and derived scalar quantities, to quantify the impact of this missing wedge problem on a typical tensor tomographic analysis. We conclude that the effects of data incompleteness are consistent with the predicted impact of the missing wedge problem, and that the impact on tensor tomographic analysis is appreciable but limited, especially if precautions are taken. In particular, there is only limited impact on the means and relative anisotropies of the reconstructed reciprocal space maps. Using a novel acquisition scheme for SAXS tensor tomography to obtain complete data for a millimeter‐sized sample of human trabecular bone, we investigate and quantify the impact of the missing wedge problem on the reconstruction across real and reciprocal space.
Journal Article
Research on the Effect of Inner Lining on Fragment Scattering Characteristics of Fragmentation Warhead
2023
In order to improve the axial fragments killing power of fragmentation warhead, based on the Shapiro formula, a design method of the lining curve of the fragmentation warhead was proposed, and the fragmentation warhead was designed with a fragment scattering angle of 5° and 9° by using this method. Using LS-DYNA software and ALE algorithm, the numerical simulation calculation of fragment scattering process was carried out, and the static explosion test of the warhead prototype was carried out to verify the rationality of the lining curve design method. The influence of the shape and thickness of the inner lining curve on the scattering characteristics of the fragments is analyzed. The results show that the error value between the experimental value and the simulated value of the scattering angle and the theoretical design value is within 8%; the smaller the design value of the fragment scattering angle, the greater the curvature of the lining curve, and the smaller the initial scattering speed of the fragment; When the thickness of the inner lining is appropriately increased, the initial scattering speed of the fragments increases, and the scattering angle of the fragments decreases.
Journal Article
Dark-field computed tomography reaches the human scale
2022
X-ray computed tomography (CT) is one of the most commonly used three-dimensional medical imaging modalities today. It has been refined over several decades, with the most recent innovations including dual-energy and spectral photon-counting technologies. Nevertheless, it has been discovered that wave-optical contrast mechanisms—beyond the presently used X-ray attenuation—offer the potential of complementary information, particularly on otherwise unresolved tissue microstructure. One such approach is dark-field imaging, which has recently been introduced and already demonstrated significantly improved radiological benefit in small-animal models, especially for lung diseases. Until now, however, dark-field CT could not yet be translated to the human scale and has been restricted to benchtop and small-animal systems, with scan durations of several minutes or more. This is mainly because the adaption and upscaling to the mechanical complexity, speed, and size of a human CT scanner so far remained an unsolved challenge. Here, we now report the successful integration of a Talbot–Lau interferometer into a clinical CT gantry and present dark-field CT results of a human-sized anthropomorphic body phantom, reconstructed from a single rotation scan performed in 1 s. Moreover, we present our key hardware and software solutions to the previously unsolved road-blocks, which so far have kept dark-field CT from being translated from the optical bench into a rapidly rotating CT gantry, with all its associated challenges like vibrations, continuous rotation, and large field of view. This development enables clinical dark-field CT studies with human patients in the near future.
Journal Article