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Recent analyses of plant traits across large sets of species have revolutionized our understanding of plant functional differentiation. However, understanding of ecological relevance of this differentiation is contingent upon knowledge of environmental preferences of species, namely along gradients of disturbance and productivity for which no quantitative data were available until recently. We examined the relationships of key functional traits (life‐history categories, leaf‐height‐seed (LHS) traits, clonal growth and bud bank traits) in the herb‐dominated flora of Central Europe to species niche positions along the gradients of disturbance frequency, disturbance severity and productivity. Life‐history categories and bud bank size showed the strongest response to disturbance and productivity, whereas relationship of LHS traits was much weaker. A number of traits, including clonal growth form and bud bank size, showed a significantly unimodal response to disturbance frequency. Responses of many traits to disturbance frequency were different from their responses to disturbance severity. Our findings support the notions that disturbance and productivity are key gradients of species functional differentiation and that disturbance severity and frequency select for different trait suites. Furthermore, the data indicate that in a predominantly herbaceous flora, the traits of life span, clonal growth and resprouting show stronger relationship with the environment than the LHS traits, which are more important in floras with high proportions of woody species. Since most previous trait analyses are based on woody‐plant‐dominated floras, patterns revealed in a herb‐dominated flora deepen our understanding of the full range of variation within the plant kingdom. A plain language summary is available for this article. Plain Language Summary

Summary Genome‐wide association studies (GWASs) combining high‐throughput genome resequencing and phenotyping can accelerate the dissection of genetic architecture and identification of genes for plant complex traits. In this study, we developed a rapeseed genomic variation map consisting of 4 542 011 SNPs and 628 666 INDELs. GWAS was performed for three seed‐quality traits, including erucic acid content (EAC), glucosinolate content (GSC) and seed oil content (SOC) using 3.82 million polymorphisms in an association panel. Six, 49 and 17 loci were detected to be associated with EAC, GSC and SOC in multiple environments, respectively. The mean total contribution of these loci in each environment was 94.1% for EAC and 87.9% for GSC, notably higher than that for SOC (40.1%). A high correlation was observed between phenotypic variance and number of favourable alleles for associated loci, which will contribute to breeding improvement by pyramiding these loci. Furthermore, candidate genes were detected underlying associated loci, based on functional polymorphisms in gene regions where sequence variation was found to correlate with phenotypic variation. Our approach was validated by detection of well‐characterized FAE1 genes at each of two major loci for EAC on chromosomes A8 and C3, along with MYB28 genes at each of three major loci for GSC on chromosomes A9, C2 and C9. Four novel candidate genes were detected by correlation between GSC and SOC and observed sequence variation, respectively. This study provides insights into the genetic architecture of three seed‐quality traits, which would be useful for genetic improvement of B. napus.

Aim Plant trait databases often contain traits that are correlated, but for whom direct (undirected statistical dependency) and indirect (mediated by other traits) connections may be confounded. The confounding of correlation and connection hinders our understanding of plant strategies, and how these vary among growth forms and climate zones. We identified the direct and indirect connections across plant traits relevant to competition, resource acquisition and reproductive strategies using a global database and explored whether connections within and between traits from different tissue types vary across climates and growth forms. Location Global. Major taxa studied Plants. Time period Present. Methods We used probabilistic graphical models and a database of 10 plant traits (leaf area, specific leaf area, mass‐ and area‐based leaf nitrogen and phosphorous content, leaf life span, plant height, stem specific density and seed mass) with 16,281 records to describe direct and indirect connections across woody and non‐woody plants across tropical, temperate, arid, cold and polar regions. Results Trait networks based on direct connections are sparser than those based on correlations. Land plants had high connectivity across traits within and between tissue types; leaf life span and stem specific density shared direct connections with all other traits. For both growth forms, two groups of traits form modules of more highly connected traits; one related to resource acquisition, the other to plant architecture and reproduction. Woody species had higher trait network modularity in polar compared to temperate and tropical climates, while non‐woody species did not show significant differences in modularity across climate regions. Main conclusions Plant traits are highly connected both within and across tissue types, yet traits segregate into persistent modules of traits. Variation in the modularity of trait networks suggests that trait connectivity is shaped by prevailing environmental conditions and demonstrates that plants of different growth forms use alternative strategies to cope with local conditions.

Analyses of functional traits have become fundamental tools for understanding patterns and processes in plant community ecology. In this context, regenerative seed traits play an important, yet overlooked, role because they largely determine the ability of plants to disperse and re-establish. A survey of recent publications in community ecology suggests that seed germination traits in particular are neglected at the expense of other relevant but overused traits based only on seed morphology. As a response to this bias, we discuss the functional significance of seed germination traits in comparison with morphological and biophysical seed traits, and advocate their use in vegetation science. We also demonstrate how research in community assembly, climate change and restoration ecology can benefit from the inclusion of germination traits, encompassing functions that cannot be explained solely by adult plant traits. Seed germination experiments conducted in the laboratory or field to quantify these traits provide ecologically meaningful and relatively easy-to-obtain information about the functional properties of plant communities. We argue that bridging the gap between seed physiologists and community ecologists will improve the prediction of plant assemblages, and propose further perspectives for including seed traits into the research agenda of functional community ecologists.

Drought and heat stress strongly influence common bean development. The aim of this work was to study the effect of water stress on yield and quality traits of four common bean cultivars under xerothermic Mediterranean conditions. The field experiments were conducted under normal and water stress (50% of the normal) conditions applied 25 days after seed emergence (first flower buds visible). Agronomic, physiomorphological, quality traits and drought indices were assessed. Water stress reduced the number of pods plant -1 (53%), seeds pod -1 (9.7%), harvest index (49%) and seed yield (58%). Cultivar 'Cannellino' provided the higher performance both under normal and water stressed conditions and exhibited the lower drought susceptibility index and the highest mean productivity and geometric mean productivity across water treatments. These results were attributed primarily to the earliness of the cultivar 'Cannellino' which enabled avoidance of very high temperatures and severe drought and to the robustness and quick pod set. Valuable genetic variability was also observed for important quality seed traits (cooking time, protein). In conclusion, water stress is a significant limiting factor for seed yield and quality traits eventhough, suitable cultivars (i.e. 'Cannellino', 'G. Northern') were indentified in the course of this study. It is suggested that breeders select for early-flowering and quick pod-setting varieties to reduce the negative effects of water and heat stress in these environments. © 2019 the Author(s).

Data phenotyping traits on soybean seeds such as shape and color has been obscure because it is difficult to define them clearly. Further, it takes too much time and effort to have sufficient number of samplings especially length and width. These difficulties prevented seed morphology to be incorporated into efficient breeding program. Here, we propose methods for an image acquisition, a data processing, and analysis for the morphology and color of soybean seeds by high-throughput method using images analysis. As results, quantitative values for colors and various types of morphological traits could be screened to create a standard for subsequent evaluation of the genotype. Phenotyping method in the current study could define the morphology and color of soybean seeds in highly accurate and reliable manner. Further, this method enables the measurement and analysis of large amounts of plant seed phenotype data in a short time, which was not possible before. Fast and precise phenotype data obtained here may facilitate Genome Wide Association Study for the gene function analysis as well as for development of the elite varieties having desirable seed traits.

Semi‐natural open habitats in north‐western Europe are highly prioritized for conservation, and optimization of management planning is essential for continued protection of their diversity. We evaluate whether current management practices, which consist mainly of summer grazing by livestock, are sufficient to maintain plant species composition in a stable state across semi‐natural areas in Denmark, or if shifts in functional composition are taking place. Further, we investigate important drivers of any ongoing changes through trait differences between winner and loser species. Using a data set of 6513 annually inventoried (2004–2010) vegetation plots from 202 semi‐natural NATURA 2000 protected areas, we assessed changes in cover of all plant species and, using boosted regression trees, whether winners and losers differ in regard to autecological characteristics and traits. There were consistent changes in cover for 123 out of 603 species across the 6‐year study period, with more species losing than winning (78 vs. 45). Winner and loser species were strongly differentiated by competition‐related traits, but traits related to soil nutrients and soil moisture also had some importance. Generally, our results indicate a trend towards taller and more competitive species. Synthesis and applications. Despite conservation actions in order to maintain a so‐called favourable conservation status, vegetation in NATURA 2000 protected areas is still undergoing compositional changes. Overall, autecological characteristics and trait differences between winners and losers match expectations given the contemporary anthropogenic pressures, especially reduced livestock grazing. Atmospheric nitrogen deposition and increased soil moisture due to reduced drainage might also be involved in observed changes. Current management (i.e. summer grazing by livestock) is insufficient to preserve the diversity of less‐competitive, low‐statured and stress‐tolerant herbaceous species, potentially leading to species losses. Such patterns can thus be expected across semi‐natural ecosystems in north‐western Europe and other places where traditional land use (i.e. previous widespread extensive livestock grazing) have been replaced with various degrees of conservation management. A greater focus on returning large grazing herbivores to conservation areas is recommended for the protection of plant species diversity and to counteract ongoing changes.

Background Sesame ( Sesamum indicum L., 2 n  = 2 x  = 26) is an important oilseed crop with high oil content but small seed size. To reveal the genetic loci of the quantitative seed-related traits, we constructed a high-density single nucleotide polymorphism (SNP) linkage map of an F 2 population by using specific length amplified fragment (SLAF) technique and determined the quantitative trait loci (QTLs) of seed-related traits for sesame based on the phenotypes of F 3 progeny. Results The genetic map comprised 2159 SNP markers distributed on 13 linkage groups (LGs) and was 2128.51 cM in length, with an average distance of 0.99 cM between adjacent markers. QTL mapping revealed 19 major-effect QTLs with the phenotypic effect (R 2 ) more than 10%, i.e., eight QTLs for seed coat color, nine QTLs for seed size, and two QTLs for 1000-seed weight (TSW), using composite interval mapping method. Particularly, LG04 and LG11 contained collocated QTL regions for the seed coat color and seed size traits, respectively, based on their close or identical locations. In total, 155 candidate genes for seed coat color, 22 for seed size traits, and 54 for TSW were screened and analyzed. Conclusions This report presents the first QTL mapping of seed-related traits in sesame using an F 2 population. The results reveal the location of specific markers associated with seed-related traits in sesame and provide the basis for further seed quality traits research.

Understanding the relative longevity of different seed lots, perhaps of different species or genotypes, but also following production under different environments or using different cultivation methods, or following different post-harvest treatments, is relevant to anyone concerned with the retention of seed lot viability and vigour during storage. However, different scientists over the years have used different conditions to assess seed lot longevity, as well as different variables as the measure of ‘longevity.’ Here, we give some of the backgrounds to how two standard protocols, with an open and closed system respectively, were derived, and explain why we consider p50, defined as the time during storage when seed lot viability, as measured through a germination test, has declined to 50%, is a suitable longevity trait parameter.

Waterbirds disperse plant species via ingestion and egestion of seeds (endozoochory). However, our understanding about the regulating effects of seed traits, underlying mechanisms and possible (co)evolutionary processes is limited by our traditional reliance on data from feeding experiments with living waterbirds. Here, we overcome these limitations by developing and applying a new bioassay that realistically simulates digestive processes for Anseriformes waterbirds. We test three hypotheses: 1) seed survival and germination are most affected by mechanical digestion in the waterbird gizzard; 2) seed size, hardness, imbibition and shape regulate seed survival; and 3) plants growing in aquatic habitats benefit most from endozoochory by waterbirds. Experiments with 28 200 seeds of 48 plant species demonstrated species‐specific seed survival that was entirely determined by digestion in the avian gizzard. Intestinal digestion did not affect seed survival but affected seed establishment (germinability and germination time) for 21% of the species. Large, hard seeds survived the simulations the best, in contrast to generally higher seed survival for smaller seeds during in vivo experiments. This mechanistically explains that small seeds escape digestive processes rather than being inherently more resistant (the ‘escape mechanism'), while large seeds are retained until fully digested or regurgitated (the ‘resistance and regurgitation mechanism'). Plants growing in wetter habitats had similar seed survival, but digestive processes stimulated their germinability and accelerated their germination more than for terrestrial plants. This indicates a relative advantage of endozoochory for plant species growing in wet habitats, possibly reflecting a co‐evolutionary response related to dormancy breaking by gut passage. Simulating seed gut passage using a bioassay allowed establishing mechanisms and identifying relevant seed traits involved in seed dispersal by waterbirds. This information enhances our understanding of how animal species shape plant species distributions, which is extremely relevant now that current anthropogenic pressures already severely impact plant dispersal capacities.