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Diversity of Babesia spp. in skunks from selected states in the United States of America
by
Krejsa, Dianna
,
Yabsley, Michael J.
,
Garrett, Kayla B.
in
Animals
,
Babesia
,
Babesia - classification
2024
Babesia species are intraerythrocytic protozoan parasites that infect a variety of hosts. The goal of this study was to evaluate the piroplasm species present in skunks in various states in the United States and determine whether there was any geographic variation. Spleen, whole blood, or blood on filter paper were received from Pennsylvania, Kentucky, North Carolina, South Carolina, Georgia, Missouri, Louisiana, Texas, Kansas, and California, and were tested for Babesia sp. We tested four species of skunks including striped skunk ( Mephitis mephitis, n = 72), eastern spotted skunk ( Spilogale putorius, n = 28), western spotted skunk ( Spilogale gracilis, n = 15), and hog-nosed skunk ( Conepatus leuconotus, n = 11). A PCR assay targeting the 18S rRNA region and cox1 region were used to determine if skunks were infected with piroplasms and for phylogenetic analyses. A total of 48.4% (61/126) of skunks tested positive for a Babesia species. Both the 18S and cox1 analysis supported a skunk-specific Babesia microti -like sp. of carnivores as well as a species in the B. microti complex that is phylogenetically unique from both B. microti of humans and the B. microti- like sp. of carnivores. In the 18S analysis, there was a third species of Babesia in hog-nosed skunks in the western piroplasm group. This study shows that at least three species of piroplasms occur in skunk species in the United States and further highlights the importance of phylogenetic analyses and the use of multiple gene targets when studying piroplasms. Les espèces de Babesia sont des protozoaires parasites intraérythrocytaires qui infectent divers hôtes. Le but de cette étude était d’évaluer les espèces de piroplasmes présentes chez les mouffettes dans divers états des États-Unis et de déterminer s’il existait une variation géographique. Des rates, du sang total ou du sang sur papier filtre ont été reçus de Pennsylvanie, du Kentucky, de Caroline du Nord, de Caroline du Sud, de Géorgie, du Missouri, de Louisiane, du Texas, du Kansas et de Californie, et ont été testés pour Babesia sp. Nous avons testé quatre espèces de mouffettes, dont la mouffette rayée ( Mephitis mephitis , n = 72), la mouffette tachetée de l’Est ( Spilogale putorius , n = 28), la mouffette tachetée de l’Ouest ( Spilogale gracilis , n = 15) et la mouffette à nez plat ( Conepatus leuconotus, n = 11). Un test PCR ciblant la région de l’ARNr 18S et la région cox1 a été utilisé pour déterminer si les mouffettes étaient infectées par des piroplasmes et pour des analyses phylogénétiques. Au total, 48,4 % (61/126) des mouffettes ont été testées positives pour une espèce de Babesia . Les analyses du 18S et du cox1 ont toutes deux confirmé une espèce de type Babesia microti de carnivores spécifique aux mouffettes ainsi qu’une espèce du complexe B. microti qui est phylogénétiquement unique à la fois par rapport à B. microti de l’homme et à l’espèce des carnivores. Dans l’analyse 18S, il y avait une troisième espèce de Babesia chez les mouffettes à nez plat du groupe des piroplasmes de l’ouest. Cette étude montre qu’au moins trois espèces de piroplasmes sont présentes chez les espèces de mouffettes aux États-Unis et souligne en outre l’importance des analyses phylogénétiques et de l’utilisation de plusieurs cibles génétiques lors de l’étude des piroplasmes.
Journal Article
Spatial and temporal structure of a mesocarnivore guild in midwestern north America
by
Nielsen, Clayton K.
,
Hellgren, Eric C.
,
Lesmeister, Damon B.
in
activity
,
bobcat (Lynx rufus)
,
Bobcats
2015
Carnivore guilds play a vital role in ecological communities by cascading trophic effects, energy and nutrient transfer, and stabilizing or destabilizing food webs. Consequently, the structure of carnivore guilds can be critical to ecosystem patterns. Body size is a crucial influence on intraguild interactions, because it affects access to prey resources, effectiveness in scramble competition, and vulnerability to intraguild predation. Coyotes (Canis latrans), bobcats (Lynx rufus), gray foxes (Urocyon cinereoargenteus), raccoons (Procyon lotor), red foxes (Vulpes vulpes), and striped skunks (Mephitis mephitis) occur sympatrically throughout much of North America and overlap in resource use, indicating potential for interspecific interactions. Although much is known about the autecology of the individual species separately, little is known about factors that facilitate coexistence and how interactions within this guild influence distribution, habitat use, and temporal activity of the smaller carnivores. To assess how habitat autecology and interspecific interactions affect the structure of this widespread carnivore guild, we conducted a large-scale, non-invasive carnivore survey using an occupancy modeling framework. We deployed remote cameras during 3-week surveys to detect carnivores at 1,118 camera locations in 357 2.6-km2 sections (3–4 cameras/section composing a cluster) in the 16 southernmost counties of Illinois (16,058 km2) during January–April, 2008–2010. We characterized microhabitat at each camera location and landscape-level habitat features for each camera cluster. In a multistage approach, we used information-theoretic methods to evaluate competing models for detection, species-specific habitat occupancy, multispecies co-occupancy, and multiseason (colonization and extinction) occupancy dynamics. We developed occupancy models for each species to represent hypothesized effects of anthropogenic features, prey availability, landscape complexity, and vegetative land cover. We quantified temporal activity patterns of each carnivore species based on their frequency of appearance in photographs. Further, we assessed whether smaller carnivores shifted their diel activity patterns in response to the presence of potential competitors. Of the 102,711 photographs of endothermic animals, we recorded photographs of bobcats (n = 412 photographs), coyotes (n = 1,397), gray foxes (n = 546), raccoons (n = 40,029), red foxes (n = 149), and striped skunks (n = 2,467). Bobcats were active primarily during crepuscular periods, and their activity was reduced with precipitation and higher temperatures. The probability of detecting bobcats decreased after a bobcat photograph was recorded, suggesting avoidance of remote cameras after the first encounter. Across southern Illinois, bobcat occupancy at the camera-location and camera-cluster scale (ψ̂local = 0.24 ± 0.04, camera cluster ψ̂cluster = 0.75 ± 0.06) was negatively influenced by anthropogenic features and infrastructure. Bobcats had high rates of colonization (γ̂ = 0.86) and low rates of extinction (ε̂ = 0.07), suggesting an expanding population, but agricultural land was less likely to be colonized. Nearly all camera clusters were occupied by coyotes (ψ̂cluster = 0.95 ± 0.03). At the local scale, coyote occupancy (ψ̂local = 0.58 ± 0.03) was higher in hardwood forest stands with open understories than in other areas. Compared to coyotes, gray foxes occupied a smaller portion of the study area (ψ̂local = 0.13 ± 0.01, ψ̂cluster = 0.29 ± 0.03) at all scales. At the scale of the camera cluster, gray fox occupancy was highest in fragmented areas with high proportions of forest, and positively related to anthropogenic features within 100% home-range buffers. Red foxes occupied a similar proportion of the study area as gray foxes (ψ̂local = 0.12 ± 0.02, ψ̂cluster = 0.26 ± 0.04) but were more closely associated with anthropogenic features. Only anthropogenic feature models made up the 90% confidence set at all scales of analysis for red foxes. Extinction probabilities at the scale of the camera cluster were higher for both gray foxes (ε̂ = 0.57) and red foxes (ε̂ = 0.35) than their colonization rates (gray fox γ̂ = 0.16, red fox γ̂ = 0.06), suggesting both species may be declining in southern Illinois. Striped skunks occupied a large portion of the study area (ψ̂local = 0.47 ± 0.01, ψ̂cluster = 0.79 ± 0.03) and were associated primarily with anthropogenic features. Raccoons were essentially ubiquitous within the study area, being photographed in 99% of camera clusters. We observed little evidence for spatial partitioning based on interspecific interactions, with the exception of the gray fox-coyote pairs, and found that habitat preferences were more important in structuring the carnivore community. Habitat had a stronger influence on the occupancy of foxes than did the presence of bobcats. However, the level of red fox activity was negatively correlated with bobcat activity. Gray fox occupancy and the number of detections within occupied sites were reduced in camera clusters occupied by coyotes but not bobcat occupancy. Overall, gray fox occupancy was highest at camera locations with fewer hardwood and more conifer trees. However, gray foxes were more likely to occupy camera locations in hardwood stands than conifer stands if coyotes were also present indicating that hardwood stands may enhance gray fox-coyote coexistence. The 2 fox species appeared to co-occur with each other at the local scale more frequently than expected based on their individual selection of habitat. Similarly, occupancy of camera location by red foxes was higher when coyotes were present. These positive spatial associations among canids may be a response to locally high prey abundance or unmeasured habitat variables. Activity levels of raccoons, bobcats, and coyotes were all positively correlated. Overall, our co-occurrence and activity models indicate competitor-driven adjustments in space use among members of a carnivore community might be the exception rather than the norm. Nevertheless, although our results indicate that gray foxes and red foxes currently coexist with bobcats and coyotes, their distribution appears to be contracting on our study area. Coexistence of foxes with larger carnivores may be enhanced by temporal partitioning of activity and by habitat features that reduce vulnerability of intraguild predation. For instance, hardwood stands may contain trees with structure that enhances tree-climbing by gray foxes, a behavior that probably facilitates coexistence with coyotes. Efforts to enhance gray fox populations would likely benefit from increasing the amount of mature oakhickory forest. Additionally, the varying results from different scales of analyses underscore the importance of considering multiple spatial scales in carnivore community studies. Los gremios de carnívoros desempeñan un papel vital en las comunidades ecológicas causando efectos tróficos en cascada, afectando la transferencia de energía y nutrientes, y estabilizando o desestabilizando las redes alimentarias. En consecuencia, la estructura de los gremios de carnívoros puede ser crítica para los patrones de los ecosistemas. El tamaño corporal tiene una influencia crucial en las interacciones intragremio, ya que afecta el acceso a los recursos de presa, la eficacia en la competencia por explotación, y la vulnerabilidad a depredación intragremio. Los coyotes (Canis latrans), linces (Lynx rufus), zorros grises (Urocyon cinereoargenteus), mapaches (Procyon lotor), el zorro (Vulpes vulpes), y zorrillos rayados (Mephitis mephitis) occurren en simpatría en gran parte de América del Norte y se solapan en los recursos que utilizan, lo que indica un potencial para interacciones interespecíficas. Aunque se sabe mucho sobre la autoecología de las especies individuales por separado, poco se sabe acerca de los factores que facilitan la coexistencia y cómo las interacciones dentro de este gremio influencian la distribución, uso de hábitat, y actividad temporal de los carnívoros más pequeños. Para evaluar cómo la autecología del hábitat y las interacciones interespecíficas afectan la estructura de este gremio carnívoro de amplia distribución, realizamos un muestreo de carnívoros no invasivo a gran escala, utilizando un marco de modelos de ocupación. Instalamos cámaras remotas en muestreos de 3 semanas para detectar carnívoros en 1118 locaciones-cámara en 357 secciones de 2.6 km2 (3–4 cámaras / sección conformaron una agrupación) en los 16 condados de más al sur de Illinois (16058 km2) entre enero y abril de 2008–2010. Caracterizamos el microhábitat en cada locación-cámara y las características del hábitat a nivel de paisaje para cada agrupación de cámaras. Con un enfoque de etapas múltiples, utilizamos métodos de teoría de información para evaluar modelos competitivos de detección, ocupación del hábitat de especies específicas, co-ocupación multi-especies, y dinámicas de ocupación multi-especies y multi-estación (colonización y extinción). Desarrollamos modelos de ocupación para cada especie para representar efectos hipotéticos de características antropogénicas, disponibilidad de presas, complejidad del paisaje, y cobertura vegetal. Cuantificamos los patrones de actividad temporal de cada especie carnívora en función de su frecuencia de aparición en fotografías. Además, evaluamos si los carnívoros más pequeños cambian sus patrones de actividad diaria en respuesta a la presencia de competidores potenciales. De las 102711 fotografías de animales endotérmicos, registramos fotografías de linces (n = 412 fotografías), coyotes (n = 1397), zorros grises (n = 546), mapaches (n = 40029), zorros rojos (n = 149), y zorrillos rayados (n = 2467). Los linces estuvieron activos principalmente durante períodos crepusculares, y su actividad se redujo con la precipitación y altas temperaturas. La probabilidad de detectar linces disminuyó después de reg
Journal Article
First Report of Skunk Amdoparvovirus (Species Carnivore amdoparvovirus 4) in Europe in a Captive Striped Skunk (Mephitis mephitis)
by
Baumgärtner, Wolfgang
,
Kaiser, Franziska K.
,
Gerhauser, Ingo
in
Aleutian disease
,
Aleutian Mink Disease
,
Algorithms
2023
Skunk amdoparvovirus (Carnivore amdoparvovirus 4, SKAV) is closely related to Aleutian mink disease virus (AMDV) and circulates primarily in striped skunks (Mephitis mephitis) in North America. SKAV poses a threat to mustelid species due to reported isolated infections of captive American mink (Neovison vison) in British Columbia, Canada. We detected SKAV in a captive striped skunk in a German zoo by metagenomic sequencing. The pathological findings are dominated by lymphoplasmacellular inflammation and reveal similarities to its relative Carnivore amdoparvovirus 1, the causative agent of Aleutian mink disease. Phylogenetic analysis of the whole genome demonstrated 94.80% nucleotide sequence identity to a sequence from Ontario, Canada. This study is the first case description of a SKAV infection outside of North America.
Journal Article
Examining the profile of high-potency cannabis and its association with severity of cannabis dependence
2015
Cannabis use is decreasing in England and Wales, while demand for cannabis treatment in addiction services continues to rise. This could be partly due to an increased availability of high-potency cannabis.
Adults residing in the UK were questioned about their drug use, including three types of cannabis (high potency: skunk; low potency: other grass, resin). Cannabis types were profiled and examined for possible associations between frequency of use and (i) cannabis dependence, (ii) cannabis-related concerns.
Frequent use of high-potency cannabis predicted a greater severity of dependence [days of skunk use per month: b = 0.254, 95% confidence interval (CI) 0.161-0.357, p < 0.001] and this effect became stronger as age decreased (b = -0.006, 95% CI -0.010 to -0.002, p = 0.004). By contrast, use of low-potency cannabis was not associated with dependence (days of other grass use per month: b = 0.020, 95% CI -0.029 to 0.070, p = 0.436; days of resin use per month: b = 0.025, 95% CI -0.019 to 0.067, p = 0.245). Frequency of cannabis use (all types) did not predict severity of cannabis-related concerns. High-potency cannabis was clearly distinct from low-potency varieties by its marked effects on memory and paranoia. It also produced the best high, was preferred, and most available.
High-potency cannabis use is associated with an increased severity of dependence, especially in young people. Its profile is strongly defined by negative effects (memory, paranoia), but also positive characteristics (best high, preferred type), which may be important when considering clinical or public health interventions focusing on cannabis potency.
Journal Article
Multi-scale occupancy estimation and modelling using multiple detection methods
by
Bailey, Larissa L
,
Campbell Grant, Evan H
,
Nichols, James D
in
animal ecology
,
Applied ecology
,
Caudata
2008
1. Occupancy estimation and modelling based on detection-nondetection data provide an effective way of exploring change in a species' distribution across time and space in cases where the species is not always detected with certainty. Today, many monitoring programmes target multiple species, or life stages within a species, requiring the use of multiple detection methods. When multiple methods or devices are used at the same sample sites, animals can be detected by more than one method. 2. We develop occupancy models for multiple detection methods that permit simultaneous use of data from all methods for inference about method-specific detection probabilities. Moreover, the approach permits estimation of occupancy at two spatial scales: the larger scale corresponds to species' use of a sample unit, whereas the smaller scale corresponds to presence of the species at the local sample station or site. 3. We apply the models to data collected on two different vertebrate species: striped skunks Mephitis mephitis and red salamanders Pseudotriton ruber. For striped skunks, large-scale occupancy estimates were consistent between two sampling seasons. Small-scale occupancy probabilities were slightly lower in the late winter/spring when skunks tend to conserve energy, and movements are limited to males in search of females for breeding. There was strong evidence of method-specific detection probabilities for skunks. As anticipated, large- and small-scale occupancy areas completely overlapped for red salamanders. The analyses provided weak evidence of method-specific detection probabilities for this species. 4. Synthesis and applications. Increasingly, many studies are utilizing multiple detection methods at sampling locations. The modelling approach presented here makes efficient use of detections from multiple methods to estimate occupancy probabilities at two spatial scales and to compare detection probabilities associated with different detection methods. The models can be viewed as another variation of Pollock's robust design and may be applicable to a wide variety of scenarios where species occur in an area but are not always near the sampled locations. The estimation approach is likely to be especially useful in multispecies conservation programmes by providing efficient estimates using multiple detection devices and by providing device-specific detection probability estimates for use in survey design.
Journal Article
The genetic diversity and structure in the European polecat were not affected by the introduction of the American mink in Poland
by
Zalewski, Andrzej
,
Zalewska, Hanna
,
Martínez-Cruz, Begoña
in
Biological diversity
,
Genetic aspects
,
Identification and classification
2022
The introduction and expansion of an invasive non-native species could have important consequences for the genetic patterns and processes of native species, moreover if the new arrival competes strongly for resources and space. This may result in the demographic decline of the native species. Knowing the effects on the levels of genetic diversity and structure in native species is key in terms of their conservation. We analysed temporal (over 50 years) genetic variation of the population of the European polecat (Mustela putorius), a species under threat in several European countries, in the Białowieża Primeval Forest (BPF), Poland, before and after the invasion of the American mink (Neovison vison). Using 11 microsatellite loci and a fragment of the mitochondrial control region we show that levels of diversity changed in the polecat population over 53 generations (over the period 1959-2012) and after the invasion of mink. When compared with other threatened European polecat populations, high levels of diversity are observed in the population in BPF in both periods, as well as in other areas in Poland. Our data shows that genetic structure was not present either before or after the mink invasion in BPF. This would suggest that the polecat population in Poland was not affected by invasive species and other negative factors and would be a potential good source of individuals for captive breeding or genetic rescue conservation management actions in areas where such actions are needed, for example the UK.
Journal Article
Rabies Management Implications Based on Raccoon Population Density Indexes
2020
An estimate or index of target species density is important in determining oral rabies vaccination (ORV) bait densities to control and eliminate specific rabies variants. From 1997–2011, we indexed raccoon (Procyon lotor) densities 253 times based on cumulative captures on 163 sites from Maine to Alabama, USA, near ORV zones created to prevent raccoon rabies from spreading to new areas. We conducted indexing under a common cage trapping protocol near the time of annual ORV to aid in bait density decisions. Unique raccoons (n = 8,415) accounted for 68.0% of captures (n = 12,367). We recaptured raccoons 2,669 times. We applied Schnabel and Huggins mark-recapture models on sites with ≥3 years of capture data and ≥25% recaptures as context for raccoon density indexes (RDIs). Simple linear relationships between RDIs and mark-recapture estimates supported application of our index. Raccoon density indexes ranged from 0.0–56.9 raccoons/km². For bait density decisions, we evaluated RDIs in the following 4 raccoon density groups, which were statistically different: (0.0–5.0 [n = 70], 5.1–15.0 [n = 129], 15.1–25.0 [n = 31], and >25.0 raccoons/km² [n = 23]). Mean RDI was positively associated with a higher percentage of developed land cover and a lower percentage of evergreen forest. Non-target species composition (excluding recaptured raccoons) accounted for 32.0% of captures. Potential bait competitors accounted for 76.5% of non-targets. The opossum (Didelphis virginiana) was the primary potential bait competitor from 27°N to 44°N latitude, north of which it was numerically replaced by the striped skunk (Mephitis mephitis). We selected the RDI approach over mark-recapture methods because of costs, geographic scope, staff availability, and the need for supplemental serologic samples. The 4 density groups provided adequate sensitivity to support bait density decisions for the current 2 bait density options. Future improvements to the method include providing random trapping locations to field personnel to prevent trap clustering and marking non-targets to better characterize bait competitors.
Journal Article
High density and survival of a native small carnivore, the Florida spotted skunk (Spilogale putorius ambarvalis), in south-central Florida
by
Jachowski, David S.
,
Froehly, Jennifer L.
,
Hewett Ragheb, Erin L.
in
carnivores
,
demography
,
density
2021
The eastern spotted skunk (Spilogale putorius) is a species of conservation concern across much of its range and has experienced a population decline since the 1940s. Little is known about the Florida spotted skunk (S. p. ambarvalis), a subspecies endemic to peninsular Florida, but previous studies and the frequency of incidental observations suggest that populations of this subspecies might be more abundant than the two eastern spotted skunk subspecies that occur elsewhere. To better understand the status and demography of the Florida spotted skunk, we assessed the density and survival of a population occurring predominantly in dry prairie habitat in south-central Florida. To obtain density estimates, we trapped spotted skunks on a mark–recapture grid over 11 independent 4-day trapping sessions from 2016 to 2018. To obtain survival estimates, we monitored weekly survival of 38 radiocollared spotted skunks (20 collared initially in 2016 and 18 collared initially in 2017) from February 2016 to August 2017. We captured a minimum of 91 unique spotted skunks on 404 occasions on the mark–recapture grid and our density estimates ranged from 6.52 ± 2.93 skunks/km2 to 23.29 ± 7.65 skunks/km2, depending on trapping session, but seasonal differences in density were not significant. The sex ratio of spotted skunks at our site was 1.0M:3.8F. Mean annual survival for all spotted skunks was 0.714 (0.503–0.925, 95% CI), and sex, season, and year did not have significant effects on survival. This survival estimate is the highest reported thus far for any skunk species. Collectively, the density and survival estimates from our study are higher than those of many other mephitids and mustelids of similar size, and these findings reinforce the value of studying locally abundant populations of small carnivores to better inform the conservation, management, and potential restoration of these species in the future.
Journal Article
A geometric morphometric approach to distinguish ferret from polecat and its application to an archaeological specimen from Mechelen
2024
The inability to differentiate skeletal remains belonging to the ferret from those of its wild ancestor, the European polecat, presents a particular challenge for zooarchaeologists which currently hinders a better understanding of ferret domestication history. Using a geometric morphometric approach on the mandible, this study provides a new method to distinguish the two forms. Despite a small sample size and some overlap in the dataset, this method allowed the identification of a (post)medieval specimen from Mechelen (Belgium) as a wild polecat. Results demonstrate that ferrets can largely be distinguished from polecats based on mandibular morphology.
Journal Article