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"Soils Composition."
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Organic Matter and Mineral Composition of Silicate Soils: FTIR Comparison Study by Photoacoustic, Diffuse Reflectance, and Attenuated Total Reflection Modalities
This study aims to compare photoacoustic (FTIR–PAS), diffuse reflectance (DRIFT), and attenuated total reflection (ATR) FTIR modalities in the wide wavenumber range from NIR (7500 cm−1) to FIR (150 cm−1) for the same silicate soil samples under the same conditions. The possibilities of non-destructive rapid qualitative analysis of soils by these modalities without comprehensive data treatment were compared. The assignment of more than 100 bands for the chernozem and sod-podzolic as common types of silicate types of soil was made. The following groups of bands of organic matter and inorganic matrix were reliably found in spectra of all or at least two modalities: 3690–3680 cm−1 (hydrogen-bonded SiO–H…H2O stretch, not ATR), 2930–2910 cm−1 and 2860–2850 cm−1 (methylene stretch), 1390–1380 cm−1, (symmetric stretch carboxylate, DRIFT and FTIR–PAS); 2000–1990 cm−1, 1885 cm−1, and 1790–1783 cm−1 (SiO2 overtones, DRIFT and FTIR–PAS), 1163–1153 cm−1, SiO2 lattice (not FTIR–PAS), 1037 cm−1 (Si–O or Al–O stretch), 796 cm−1 (lattice symmetrical Si–O–Si stretch); 697 cm−1, SiO2; and 256 cm−1 (not FTIR–PAS). Amide I, II, and III bands appear in DRIFT and FTIR–PAS spectra while not in ATR. Except for methylene and carboxylate groups, CH vibrations (3100–2900 cm−1) are not seen in ATR. Bands at 1640–1630 cm−1, 1620–1610 cm−1, 1600–1598 cm−1 (primary water bands and probably carboxylate) appear in the spectra of all three modalities but are unresolved and require data treatment. It is preferable to use all three modalities to characterize both soil organic matter and mineral composition. DRIFT provides the maximum number of bands in all three modalities and should be selected as a primary technique in the NIR and 4000–2000 cm−1 regions for hydrogen-bonding bands, CHX groups, and the silicate matrix. ATR–FTIR complements DRIFT and provides a good sensitivity for soil water and the matrix in 2000–400 cm−1. FTIR–PAS in 4000–1500 cm−1 reveals more bands than DRIFT and shows the highest sensitivity for absorption bands that do not appear in DRIFT or ATR-IR spectra. Thus, FTIR–PAS is expedient for supporting either DRIFT or ATR–FTIR. This modality comparison can be a basis for methodological support of IR spectroscopy of soils and similar organomineral complexes.
Journal Article
Up in the garden and down in the dirt
\"Up in the garden, the world is full of green--leaves and sprouts, growing vegetables, ripening fruit. But down in the dirt there is a busy world of earthworms digging, snakes hunting, skunks burrowing, and all the other animals that make a garden their home. In this exuberant book, discover the wonder and activity that lie hidden between the stalks, under the shade of leaves ... and down in the dirt.\"-- Provided by publisher.
Book
Effects of microbial inoculants on phosphorus and potassium availability, bacterial community composition, and chili pepper growth in a calcareous soil: a greenhouse study
PurposePhosphorus (P) and potassium (K) are two important essential nutrient elements for plant growth and development but their availability is often limited in calcareous soils. The objective of this study was to determine the effects of applying microbial inoculants (MI, containing effective strains of Bacillus megaterium and Bacillus mucilaginous) on the availability of P and K, plant growth, and the bacterial community in calcareous soil.Materials and methodsA greenhouse experiment was conducted to explore the effects of the addition of MI (control: without MI addition; treatment: with MI addition at the rate of 60 L ha−1) on the concentrations of P and K in soil and plant, soil bacterial community diversity and composition, and chili pepper (Capsicum annuum L.) growth.Results and discussionThe results showed that MI inoculation significantly increased the fruit yields by 28.5% (p < 0.01), available P and K in the rhizosphere soil by 32.1% and 28.1% (p < 0.05), and P and K accumulation in the whole plants by 40.9% and 40.2%, respectively (p < 0.05). Moreover, high-throughput sequencing revealed that Proteobacteria, Acidobacteria, Bacteroidetes, Chloroflexi, and Gemmatimonadetes were the dominant phyla of soil bacteria. MI application did not significantly impact the diversity and composition of soil bacterial communities, but increased relative abundances of bacterial genera Flavobacterium responsible for promoting root development across growing stages (p < 0.05), and changed the soil bacterial community structure associated closely with soil properties of available P, K, and pH in soil.ConclusionsThe application of MI improved the bioavailability of P and K and plant growth due to its impact on the soil bacterial community structure.
Journal Article
Salix species and varieties affect the molecular composition and diversity of soil organic matter
Abstract Background and aims Most studies of the relationships between the composition of soil organic matter and plant cover have been carried out at the plant genera level. However, they have largely overlooked the potential effects that plant varieties, belonging to the same genus, can have on soil organic matter. Methods We investigated whether plant varieties belonging to different Salix species ( S. dasyclados and S. viminalis) impacted the composition of organic matter using mid-infrared spectroscopy and pyrolysis GC/MS. Top-soils were taken from an 18 year-old long-term field trial where six Salix varieties were grown as short-rotation coppice under two fertilisation regimes. Results Significant differences in the molecular composition and diversity of the soil organic matter were observed in the fertilised plots. The effects were mostly visible at the species level, i.e. the organic matter in soil under S. dasyclados varieties had higher molecular diversity and lignin content than under S. viminalis , potentially due to differences in the amount and composition of their litter inputs. Smaller differences among varieties from the same species were also observed. No significant effects of Salix varieties were observed in the unfertilised plots. The relatively high degree of spatial variability of several soil properties found in these plots may have masked plant variety and/or species effects. Conclusion This study provides evidence that the identity of Salix species or varieties can affect the molecular composition and diversity of soil organic matter. The corresponding traits should be considered in breeding programmes to enhance soil organic C accumulation and persistence.
Journal Article
Latitudinal and Altitudinal Patterns and Influencing Factors of Soil Humus Carbon in the Low-Latitude Plateau Regions
The composition of forest soil organic matter is an important part of the global carbon cycle, which is effective by temperature and moisture. As we all know, the temperature and moisture in the low-latitude plateau regions are very sensitive to changes in latitude and altitude. However, the composition of soil organic matter response to changes in latitude and altitude in the low-latitude plateau regions is unknown. In this study, the effects of latitude (21–29° N) and altitude (500–4000 m) on soil organic carbon (SOC) and humic acid carbon (HAC), fulvic acid carbon (FAC), and humin carbon (HMC) in forest surface soil (0–10 cm) were investigated. The results showed that the contents of soil organic carbon and humus increased with the increase in altitude and latitude. The effect of altitude on the composition of organic matter was significant only at 23° N to 25° N. The composition of organic matter is not only regulated by mean annual temperature (MAT) and soil moisture content (SMC) but also affected by soil pH, carbon to nitrogen ratio (C/N), and powder. The soil surface layer (0–10 cm) carbon sequestration capacity in high-latitude and high-altitude areas is stronger than that in low-latitude and low-altitude areas. As a consequence, in today’s response to global climate change, the high carbon sequestration capacity of high latitude and high altitude areas should be given attention and protection.
Journal Article
Soil biodiversity and soil community composition determine ecosystem multifunctionality
Biodiversity loss has become a global concern as evidence accumulates that it will negatively affect ecosystem services on which society depends. So far, most studies have focused on the ecological consequences of above-ground biodiversity loss; yet a large part of Earth’s biodiversity is literally hidden below ground. Whether reductions of biodiversity in soil communities below ground have consequences for the overall performance of an ecosystem remains unresolved. It is important to investigate this in view of recent observations that soil biodiversity is declining and that soil communities are changing upon land use intensification. We established soil communities differing in composition and diversity and tested their impact on eight ecosystem functions in model grassland communities. We show that soil biodiversity loss and simplification of soil community composition impair multiple ecosystem functions, including plant diversity, decomposition, nutrient retention, and nutrient cycling. The average response of all measured ecosystem functions (ecosystem multifunctionality) exhibited a strong positive linear relationship to indicators of soil biodiversity, suggesting that soil community composition is a key factor in regulating ecosystem functioning. Our results indicate that changes in soil communities and the loss of soil biodiversity threaten ecosystem multifunctionality and sustainability.
Journal Article
Technical note: Evaporating water is different from bulk soil water in δ2H and δ18O and has implications for evaporation calculation
Soil evaporation is a key process in the water cycle and can be conveniently quantified using δ2H and δ18O in bulk surface soil water (BW). However, recent research shows that soil water in larger pores evaporates first and differs from water in smaller pores in δ2H and δ18O, which disqualifies the quantification of evaporation from BW δ2H and δ18O. We hypothesized that BW had different isotopic compositions from evaporating water (EW). Therefore, our objectives were to test this hypothesis first and then evaluate whether the isotopic difference alters the calculated evaporative water loss. We measured the isotopic composition of soil water during two continuous evaporation periods in a summer maize field. Period I had a duration of 32 d, following a natural precipitation event, and period II lasted 24 d, following an irrigation event with a 2H-enriched water. BW was obtained by cryogenically extracting water from samples of 0–5 cm soil taken every 3 d; EW was derived from condensation water collected every 2 d on a plastic film placed on the soil surface. The results showed that when event water was heavier than pre-event BW, δ2H of BW in period II decreased, with an increase in evaporation time, indicating heavy water evaporation. When event water was lighter than the pre-event BW, δ2H and δ18O of BW in period I and δ18O of BW in period II increased with increasing evaporation time, suggesting light water evaporation. Moreover, relative to BW, EW had significantly smaller δ2H and δ18O in period I and significantly smaller δ18O in period II (p<0.05). These observations suggest that the evaporating water was close to the event water, both of which differed from the bulk soil water. Furthermore, the event water might be in larger pores from which evaporation takes precedence. The soil evaporative water losses derived from EW isotopes were compared with those from BW. With a small isotopic difference between EW and BW, the evaporative water losses in the soil did not differ significantly (p>0.05). Our results have important implications for quantifying evaporation processes using water stable isotopes. Future studies are needed to investigate how soil water isotopes partition differently between pores in soils with different pore size distributions and how this might affect soil evaporation estimation.
Journal Article
Effect of organic matter manipulation on the seasonal variations in microbial composition and enzyme activities in a subtropical forest of China
PurposeThe aim of this study was to determine the impacts of reduced aboveground and belowground C inputs on the community composition of soil microbes and enzyme activities in a seasonal context.Materials and methodsLitterfall removal, root exclusion, and stem girdling treatments under a subtropical conifer plantation growing on a coarse texture of sandy soil in southeast China were employed. One year after the initiation of the treatments, we measured the soil microbial biomass, community composition, and enzyme activities, including hydrolytic and oxidative extracellular enzymes on a seasonal basis. Soil inorganic N, dissolved organic C and N, and available P were also determined.Results and discussionSeasonal variations of soil microbial composition and enzyme activities were attributed to soil temperature and moisture and soil nutrient availability. Girdling treatments significantly increased the abundances of gram-negative bacteria and actinomycetes in winter when soil temperature, moisture, and available nutrients were at the lowest level among the four seasons. Girdling alone and girdling combined with litter removal and root trenching significantly decreased the cellobiohydrolase, β-glucosidase, β-1,4-N-acetylglucosaminidase, and acid phosphatase activities in autumn. These hydrolytic enzyme activities were significantly correlated with soil moisture, NH4+, DOC, and available P. We also found a significant relationship between hydrolytic enzyme activities and the ratio of gram-positive to gram-negative bacteria.ConclusionsPlant belowground C allocation, soil temperature, and moisture drove the seasonal patterns of soil microbial composition and enzyme activities. Labile C input by root exudates is a key determinant of ecosystem functions mediated by soil microbes such as microbial decomposition processes.
Journal Article
Soil microbial communities are shaped by plant-driven changes in resource availability during secondary succession
Although we understand the ecological processes eliciting changes in plant community composition during secondary succession, we do not understand whether co-occurring changes in plant detritus shape saprotrophic microbial communities in soil. In this study, we investigated soil microbial composition and function across an old-field chronosequence ranging from 16 to 86 years following agricultural abandonment, as well as three forests representing potential late-successional ecosystems. Fungal and bacterial community composition was quantified from ribosomal DNA, and insight into the functional potential of the microbial community to decay plant litter was gained from shotgun metagenomics and extracellular enzyme assays. Accumulation of soil organic matter across the chronosequence exerted a positive and significant effect on fungal phylogenetic β-diversity and the activity of extracellular enzymes with lignocellulolytic activity. In addition, the increasing abundance of lignin-rich C
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grasses was positively related to the composition of fungal genes with lignocellulolytic function, thereby linking plant community composition, litter biochemistry, and microbial community function. However, edaphic properties were the primary agent shaping bacterial communities, as bacterial β-diversity and variation in functional gene composition displayed a significant and positive relationship to soil pH across the chronosequence. The late-successional forests were compositionally distinct from the oldest old fields, indicating that substantial changes occur in soil microbial communities as old fields give way to forests. Taken together, our observations demonstrate that plants govern the turnover of soil fungal communities and functional characteristics during secondary succession, due to the continual input of detritus and differences in litter biochemistry among plant species.
Journal Article