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10,706
result(s) for
"Solution kinetics"
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Molecular basis for chirality-regulated Aβ self-assembly and receptor recognition revealed by ion mobility-mass spectrometry
2019
Despite extensive efforts on probing the mechanism of Alzheimer’s disease (AD) and enormous investments into AD drug development, the lack of effective disease-modifying therapeutics and the complexity of the AD pathogenesis process suggest a great need for further insights into alternative AD drug targets. Herein, we focus on the chiral effects of truncated amyloid beta (Aβ) and offer further structural and molecular evidence for epitope region-specific, chirality-regulated Aβ fragment self-assembly and its potential impact on receptor-recognition. A multidimensional ion mobility-mass spectrometry (IM-MS) analytical platform and in-solution kinetics analysis reveal the comprehensive structural and molecular basis for differential Aβ fragment chiral chemistry, including the differential and cooperative roles of chiral Aβ N-terminal and C-terminal fragments in receptor recognition. Our method is applicable to many other systems and the results may shed light on the potential development of novel AD therapeutic strategies based on targeting the D-isomerized Aβ, rather than natural L-Aβ.
Chiral inversion of amino acids is thought to modulate the structure and function of amyloid beta (Aβ) but these processes are poorly understood. Here, the authors develop an ion mobility-mass spectrometry based approach to study chirality-regulated structural features of Aβ fragments and their influence on receptor recognition.
Journal Article
DEGENERATE PARABOLIC STOCHASTIC PARTIAL DIFFERENTIAL EQUATIONS: QUASILINEAR CASE
by
Debussche, Arnaud
,
Vovelle, Julien
,
Hofmanová, Martina
in
Analysis of PDEs
,
Approximation
,
Cauchy problems
2016
In this paper, we study the Cauchy problem for a quasilinear degenerate parabolic stochastic partial differential equation driven by a cylindrical Wiener process. In particular, we adapt the notion of kinetic formulation and kinetic solution and develop a well-posedness theory that includes also an L1-contraction property. In comparison to the previous works of the authors concerning stochastic hyperbolic conservation laws [J. Funct. Anal. 259 (2010) 1014–1042] and semilinear degenerate parabolic SPDEs [Stochastic Process. Appl. 123 (2013) 4294–4336], the present result contains two new ingredients that provide simpler and more effective method of the proof: a generalized Itô formula that permits a rigorous derivation of the kinetic formulation even in the case of weak solutions of certain nondegenerate approximations and a direct proof of strong convergence of these approximations to the desired kinetic solution of the degenerate problem.
Journal Article
WELL-POSEDNESS AND REGULARITY FOR QUASILINEAR DEGENERATE PARABOLIC-HYPERBOLIC SPDE
2018
We study quasilinear degenerate parabolic-hyperbolic stochastic partial differential equations with general multiplicative noise within the framework of kinetic solutions. Our results are twofold: First, we establish new regularity results based on averaging techniques. Second, we prove the existence and uniqueness of solutions in a full L¹ setting requiring no growth assumptions on the nonlinearities. In addition, we prove a comparison result and an L¹-contraction property for the solutions, generalizing the results obtained in [Ann. Probab. 44 (2016) 1916–1955].
Journal Article
Kinetics of dissolution of glass fibre in hot alkaline solution
by
Liggat, J. J.
,
Thomason, J. L.
,
Bashir, S. T.
in
Activation energy
,
Ceramics
,
Characterization and Evaluation of Materials
2018
Kinetics of the dissolution of E-glass fibres in alkaline solutions was investigated. To allow an accurate determination of conversion, glass fibres were immersed individually in the corrosive medium and the diameter change was measured with the use of a scanning electron microscope. Few studies have been reported in the literature on the kinetics of E-glass fibre dissolution or the dissolution of individual fibres. Our experimental results fit well in the zero-order and shrinking cylinder models, suggesting either the diffusion of hydroxide ions through the solution or the glass fibre etching itself was rate-limiting step. The rate constant for the reaction of glass fibre with alkaline solution at 95 °C was found to be between 1.3 × 10
−4
and 4.3 × 10
−4
g/(m
2
s). The reaction order (
n
) was determined as 0.31–0.49 with respect to the alkaline solution, and the activation energy was 58–79 kJ/mol.
Journal Article
LARGE DEVIATION PRINCIPLES FOR FIRST-ORDER SCALAR CONSERVATION LAWS WITH STOCHASTIC FORCING
by
Wu, Jiang-Lun
,
Zhang, Rangrang
,
Zhang, Tusheng
in
Cauchy problems
,
Conservation
,
Conservation laws
2020
In this paper, we established the Freidlin–Wentzell-type large deviation principles for first-order scalar conservation laws perturbed by small multiplicative noise. Due to the lack of the viscous terms in the stochastic equations, the kinetic solution to the Cauchy problem for these first-order conservation laws is studied. Then, based on the well-posedness of the kinetic solutions, we show that the large deviations holds by utilising the weak convergence approach.
Journal Article
“Transitivity”: A Code for Computing Kinetic and Related Parameters in Chemical Transformations and Transport Phenomena
by
Coutinho, Nayara D.
,
Palazzetti, Federico
,
Mundim, Kleber C.
in
activation energy
,
Algorithms
,
Chemical reactions
2019
The Transitivity function, defined in terms of the reciprocal of the apparent activation energy, measures the propensity for a reaction to proceed and can provide a tool for implementing phenomenological kinetic models. Applications to systems which deviate from the Arrhenius law at low temperature encouraged the development of a user-friendly graphical interface for estimating the kinetic and thermodynamic parameters of physical and chemical processes. Here, we document the Transitivity code, written in Python, a free open-source code compatible with Windows, Linux and macOS platforms. Procedures are made available to evaluate the phenomenology of the temperature dependence of rate constants for processes from the Arrhenius and Transitivity plots. Reaction rate constants can be calculated by the traditional Transition-State Theory using a set of one-dimensional tunneling corrections (Bell (1935), Bell (1958), Skodje and Truhlar and, in particular, the deformed ( d -TST) approach). To account for the solvent effect on reaction rate constant, implementation is given of the Kramers and of Collins–Kimball formulations. An input file generator is provided to run various molecular dynamics approaches in CPMD code. Examples are worked out and made available for testing. The novelty of this code is its general scope and particular exploit of d -formulations to cope with non-Arrhenius behavior at low temperatures, a topic which is the focus of recent intense investigations. We expect that this code serves as a quick and practical tool for data documentation from electronic structure calculations: It presents a very intuitive graphical interface which we believe to provide an excellent working tool for researchers and as courseware to teach statistical thermodynamics, thermochemistry, kinetics, and related areas.
Journal Article
Ex-solution kinetics of nickel-ceria–doped strontium titanate perovskites
by
Basu, Suddhasatwa
,
Ramani, Vijay K
,
Sankarasubramanian, Shrihari
in
Cerium oxides
,
Chemisorption
,
High temperature
2021
Nickel ex-solution from La0.3Sr0.5NixTi1-xO3-δ (LSNxTA-) perovskites containing different nickel fractions (x = 0.04 and 0.16) is studied using temperature-programmed reduction (TPR) and chemisorption. Non-isothermal reduction of nickel occurs through two steps as confirmed using two-parameter Sestak-Berggren model, where the nuclei of nickel are formed at low temperatures, which grow through at elevated temperatures. The kinetic triplets (Ea, f(α), and ln A) are estimated from the Sestak-Berggren model. The nucleation at elevated temperature is the rate-determining step whose activation energy (Ea) is reduced with higher nickel loadings in the perovskite. Doping ceria at the A-site in LC0.04SN0.16TA- increases the dispersion of nickel, estimated using chemisorption studies in comparison to LSN0.16TA- perovskites. Physical characterization of sthe reduced perovskites using X-ray photo electron spectroscopy is used to correlate the ex-solution process with the Sestak-Berggren model.
Journal Article
Stochastic degenerate fractional conservation laws
2023
We consider the Cauchy problem for a degenerate fractional conservation laws driven by a noise. In particular, making use of an adapted kinetic formulation, a result of the existence and uniqueness of the solution is established. Moreover, a unified framework is also established to develop the continuous dependence theory. More precisely, we demonstrate
L
1
-continuous dependence estimates on the initial data, the order of fractional Laplacian, the diffusion matrix, the flux function, and the multiplicative noise function present in the equation.
Journal Article
Analytical solutions to the coupled fractional neutron diffusion equations with delayed neutrons system using Laplace transform method
2023
The neutron diffusion equation (NDE) is one of the most important partial differential equations (PDEs), to describe the neutron behavior in nuclear reactors and many physical phenomena. In this paper, we reformulate this problem via Caputo fractional derivative with integer-order initial conditions, whose physical meanings, in this case, are very evident by describing the whole-time domain of physical processing. The main aim of this work is to present the analytical exact solutions to the fractional neutron diffusion equation (F-NDE) with one delayed neutrons group using the Laplace transform (LT) in the sense of the Caputo operator. Moreover, the poles and residues of this problem are discussed and determined. To show the accuracy, efficiency, and applicability of our proposed technique, some numerical comparisons and graphical results for neutron flux simulations are given and tested at different values of time$ t $and order$ \\alpha $which includes the exact solutions (when$ \\alpha = 1). $Finally, Mathematica software (Version 12) was used in this work to calculate the numerical quantities.
Journal Article
Quasi-solutions of genuinely nonlinear forward-backward ultra-parabolic equations
by
Kuznetsov, I V
,
Sazhenkov, S A
in
entropy solution
,
forward-backward ultra-parabolic equation
,
genuine nonlinearity condition
2017
In the present paper we have proved the existence of quasi-solutions of genuinely nonlinear forward-backward ultra-parabolic equations. Quasi-solutions are obtained with the help of the vanishing anisotropic temporal diffusion method. Moreover, at the present stage of our research we assume that various choices of temporal artificial diffusion coefficients lead to entropy solutions or to quasi-solutions. The latter assumption is the subject of our further scientific research.
Journal Article