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Genetic improvement through breeding is one of the key approaches to increasing biomass supply. This paper documents the breeding progress to date for four perennial biomass crops (PBCs) that have high output–input energy ratios: namely Panicum virgatum (switchgrass), species of the genera Miscanthus (miscanthus), Salix (willow) and Populus (poplar). For each crop, we report on the size of germplasm collections, the efforts to date to phenotype and genotype, the diversity available for breeding and on the scale of breeding work as indicated by number of attempted crosses. We also report on the development of faster and more precise breeding using molecular breeding techniques. Poplar is the model tree for genetic studies and is furthest ahead in terms of biological knowledge and genetic resources. Linkage maps, transgenesis and genome editing methods are now being used in commercially focused poplar breeding. These are in development in switchgrass, miscanthus and willow generating large genetic and phenotypic data sets requiring concomitant efforts in informatics to create summaries that can be accessed and used by practical breeders. Cultivars of switchgrass and miscanthus can be seed‐based synthetic populations, semihybrids or clones. Willow and poplar cultivars are commercially deployed as clones. At local and regional level, the most advanced cultivars in each crop are at technology readiness levels which could be scaled to planting rates of thousands of hectares per year in about 5 years with existing commercial developers. Investment in further development of better cultivars is subject to current market failure and the long breeding cycles. We conclude that sustained public investment in breeding plays a key role in delivering future mass‐scale deployment of PBCs. Plant breeding links the research effort with commercial mass upscaling. The authors’ assessment of development status of the four species is shown (poplar having two: one for short rotation coppice (SRC) poplar and one for the more traditional short rotation forestry (SRF)). Mass scale deployment needs developments outside the breeding arenas to drive breeding activities more rapidly and extensively.

The aliphatic heterocycles piperidine and morpholine are core structures of well-known antifungals such as fenpropidin and fenpropimorph, commonly used as agrofungicides, and the related morpholine amorolfine is approved for the treatment of dermal mycoses in humans. Inspired by these lead structures, we describe here the synthesis and biological evaluation of 4-aminopiperidines as a novel chemotype of antifungals with remarkable antifungal activity. A library of more than 30 4-aminopiperidines was synthesized, starting from N-substituted 4-piperidone derivatives by reductive amination with appropriate amines using sodium triacetoxyborohydride. Antifungal activity was determined on the model strain Yarrowia lipolytica, and some compounds showed interesting growth-inhibiting activity. These compounds were tested on 20 clinically relevant fungal isolates (Aspergillus spp., Candida spp., Mucormycetes) by standardized microbroth dilution assays. Two of the six compounds, 1-benzyl-N-dodecylpiperidin-4-amine and N-dodecyl-1-phenethylpiperidin-4-amine, were identified as promising candidates for further development based on their in vitro antifungal activity against Candida spp. and Aspergillus spp. Antifungal activity was determined for 18 Aspergillus spp. and 19 Candida spp., and their impact on ergosterol and cholesterol biosynthesis was determined. Toxicity was determined on HL-60, HUVEC, and MCF10A cells, and in the alternative in vivo model Galleria mellonella. Analysis of sterol patterns after incubation gave valuable insights into the putative molecular mechanism of action, indicating inhibition of the enzymes sterol C14-reductase and sterol C8-isomerase in fungal ergosterol biosynthesis.

This study evaluated the ability of selected strains of Trichoderma viride, T. viridescens, and T. atroviride to inhibit mycelium growth and the biosynthesis of mycotoxins deoxynivalenol (DON), nivalenol (NIV), zearalenone (ZEN), α-(α-ZOL) and β-zearalenol (β-ZOL) by selected strains of Fusarium culmorum and F. cerealis. For this purpose, an in vitro experiment was carried out on solid substrates (PDA and rice). After 5 days of co-culture, it was found that all Trichoderma strains used in the experiment significantly inhibited the growth of Fusarium mycelium. Qualitative assessment of pathogen–antagonist interactions showed that Trichoderma colonized 75% to 100% of the medium surface (depending on the species and strain of the antagonist and the pathogen) and was also able to grow over the mycelium of the pathogen and sporulate. The rate of inhibition of Fusarium mycelium growth by Trichoderma ranged from approximately 24% to 66%. When Fusarium and Trichoderma were co-cultured on rice, Trichoderma strains were found to inhibit DON biosynthesis by about 73% to 98%, NIV by about 87% to 100%, and ZEN by about 12% to 100%, depending on the pathogen and antagonist strain. A glycosylated form of DON was detected in the co-culture of F. culmorum and Trichoderma, whereas it was absent in cultures of the pathogen alone, thus suggesting that Trichoderma is able to glycosylate DON. The results also suggest that a strain of T. viride is able to convert ZEN into its hydroxylated derivative, β-ZOL.

Does climate determine species' ranges? Rapid rates of anthropogenic warming make this classic ecological question especially relevant. We ask whether climate controls range limits by quantifying relationships between climatic variables (precipitation, temperature) and tree growth across the altitudinal ranges of six Pacific Northwestern conifers on Mt. Rainier, Washington, USA. Results for three species ( Abies amabilis , Callitropsis nootkatensis , Tsuga mertensiana ) whose upper limits occur at treeline (>1600 m) imply climatic controls on upper range limits, with low growth in cold and high snowpack years. Annual growth was synchronized among individuals at upper limits for these high-elevation species, further suggesting that stand-level effects such as climate constrain growth more strongly than local processes. By contrast, at lower limits climatic effects on growth were weak for these high-elevation species. Growth-–climate relationships for three low-elevation species ( Pseudotsuga menziesii , Thuja plicata , Tsuga heterophylla ) were not consistent with expectations of climatic controls on upper limits, which are located within closed-canopy forest (<1200 m). Annual growth of these species was poorly synchronized among individuals. Our results suggest that climate controls altitudinal range limits at treeline, while local drivers (perhaps biotic interactions) influence growth in closed-canopy forests. Climate-change-induced range shifts in closed-canopy forests will therefore be difficult to predict accurately.

The major vector for these diseases in the western part of Russia is Ixodes persulcatus Schulze, 1930. Since the beginning of the 21st century, another tick with similar ecology, Ixodes pavlovskyi Pomerantsev, 1946, has been found in the same habitats (Romanenko and Chekalkina 2004) and currently predominates over I. persulcatus in urban areas. According to the data of ringing (Moskvitin and Dubovik 1969, 1977, Moskvitin and Strelkov 1977, Moskvitin 1992, Ryabitsev 2001), Siberian birds spend the winter in Africa, Europe, West Asia, India, and Southeast Asia (Fig. 1). [...]this study was conducted to identify the pathogens that were detected in different species of birds and ticks parasitising on them and to evaluate their interdependence. PCR analysis RNA extraction, reverse transcription, and detection of TBEV and WNV cDNA using RT-PCR, as well as the detection of other bacterial and protozoan pathogens using PCR, were performed as described earlier (Chausov et al. 2010).

Objective: This study aimed to evaluate the prevalence, abundance, and identification of genera of gastrointestinal parasites in buffaloes belonging to an establishment in Villa Oliva, Ñeembucú Department, Paraguay. Materials and Methods: A total of 117 buffaloes were included in the study and divided into three groups of 39 (n = 39) animals—Group 1: = <12 months (G1); Group 2: = <36 months (G2); and Group 3: >37 months (G3). All samples were tested using the saturated salt flotation. Eggs and oocyte counts were determined using McMaster’s method. Recuperation of larvae 3 was carried out after coproculture using the Baerman technique. Identification was based on morphological identification keys. Results: The presence of eggs and/or oocysts of parasites belonging to Cestoda, Protozoa, and Nematoda was noted. The prevalence of gastrointestinal nematode (GIN) was 36.75%. The highest abundance was observed in G1. After coproculture Moniezia expanza, Eimeria spp., and Haemonchus spp.; Teladorsagia spp./Ostertagia spp. were also identified. It is also observed that the incidence of nematode parasite infestation in female buffalo is high compared to males; however, in terms of microparasites, it is the opposite. According to our results, as buffalo age increased, parasite loads decreased considerably. Conclusion: Those results may link factors between hosts and the environment with the ability to maintain gastrointestinal infestation at levels that do not compromise health and body conditions. This study presented results of the prevalence, abundance, and identification of GINs from buffalos of Paraguay for the first time.

This study aimed to identify ticks infesting dogs admitted to the Potchefstroom Animal Welfare Society (PAWS) and to detect tick-borne pathogens they are harbouring. A total of 592 ticks were collected from 61 stray dogs admitted to PAWS originating from several suburbs in and near Potchefstroom, South Africa. The dog ticks were identified as Haemaphysalis elliptica (39%) and Rhipicephalus sanguineus (61%) by both morphological and DNA analyses. Of these ticks, H. elliptica consisted of 67.5% (156/231) and 32.5% (75/231) female and male ticks, respectively, whilst R. sanguineus consisted of 48.5% (175/361) and 51.5% (186/361) female and male ticks, respectively. Microscopic examination of blood smears from engorged female ticks indicated overall occurrences of 0.5% (1/204) for Babesia spp. from R. sanguineus, 1% (2/204) of Anaplasma spp. from H. elliptica, and 22% (45/204) of Rickettsia spp. from both H. elliptica and R. sanguineus. Using pooled samples molecular detection of tick-borne pathogens indicated overall occurrences of 1% (1/104) for A. phagocytophilum in H. elliptica, 9.6% (10/104) of Rickettsia spp. in H. elliptica and R. sanguineus, 5.8% (6/104) of Ehrlichia canis in H. elliptica and R. sanguineus, and 13.5% (14/104) of Coxiella spp. in both H. elliptica and R. sanguineus. Additionally, PCR detected 6.5% (2/31) of Coxiella spp. DNA from H. elliptica eggs. Our data indicate that urban stray dogs admitted at PAWS are infested by H. elliptica and R. sanguineus ticks which are harbouring several pathogenic organisms known to cause tick-borne diseases.

Landscape-wide mass-flowering of oilseed rape (canola Brassica napus ) can considerably affect wild bee communities and pollination success of wild plants. We aimed to assess the impact of oilseed rape on the pollination of wild plants and bee abundance during and after oilseed-rape bloom, including effects on crop-noncrop spillover at landscape and adjacent-field scales. We focused on two shrub species (hawthorn Crataegus spp., dog rose Rosa canina ) and adjacent herb flowering in forest edges, connected hedges, and isolated hedges in Lower Saxony, Germany. We selected 35 landscape circles of 1 km radius, differing in the amount of oilseed rape; 18 were adjacent to oilseed rape and 17 to cereal fields, and we quantified bee density via pan traps at all sites. Adjacent oilseed rape positively affected fruit mass and seed number per fruit of simultaneously flowering hawthorn (no effect on dog rose, which flowers after the oilseed rape bloom). At the landscape scale, oilseed rape had a negative effect on bumble bee density in the hedges during flowering due to dilution of pollinators per unit area and the consequently intensified competition between oilseed rape and wild shrubs, but a positive effect after flowering when bees moved to the hedges, which still provided resources. In contrast, positive landscape-scale effects of oilseed rape were found throughout the season in forest edges, suggesting that edges support nesting activity and enhanced food resources. Our results show that oilseed rape effects on bee abundances and pollination success in seminatural habitats depend on the spatial and temporal scale considered and on the habitat type, the wild plant species, and the time of crop flowering. These scale-dependent positive and negative effects should be considered in evaluations of landscape-scale configuration and composition of crops. Food resources provided by mass-flowering crops should be most beneficial for landscape-wide enhancement of wild bee populations if seminatural habitats are available, providing (1) nesting resources and (2) continuous flowering resources during the season.

In this study, the biodegradation of zearalenone (ZEN) by cell suspensions of various Lactobacillus species (Lb. fermentum 2I3 (L1), Lb. reuteri L26 (L3), Lb. plantarum L81 (L4), Lb. reuteri 2/6 (L5), Lb. plantarum CCM 1904 (L6)), Bacillus subtilis CCM 2794 (Bs), and Bacillus licheniformis CCM 2206 (Bl); was investigated in vitro. All lactobacilli cell suspensions showed very good degradation efficiency (57.9—100 %) for zearalenone at the concentration 0.01 ppm. At higher concentrations of zearalenone, their biodegradation activity decreased significantly (0—13.9 %). Bacillus subtilis CCM 2794 was able to degrade zearalenone at concentrations of: 0.01 ppm (100 %), 0.1 ppm (74.5 %), and at higher concentrations of ZEN (1 ppm; 10 ppm), the degradation was 11.7 % and 0 %, respectively. For Bacillus licheniformis CCM 2206, no biodegradation of zearalenone was observed at the concentration of 10 ppm, but slight degradation (4.5—8.8 %) was found at lower zearalenone concentrations.

Perylene-based compounds, either naturally occurring or synthetic, have shown interesting biological activities. In this study, we report on the broad-spectrum antifungal properties of two lead amphiphilic perylene bisimides, compounds 4 and 5, which were synthesized from perylene-3,4,9,10-tetracarboxylic dianhydride by condensation with spermine and an ammonium salt formation. The antifungal activity was evaluated using a collection of fungal strains and clinical isolates from patients with onychomycosis or sporotrichosis. Both molecules displayed an interesting antifungal profile with MIC values in the range of 2–25 μM, being as active as several reference drugs, even more potent in some particular strains. The ammonium trifluoroacetate salt 5 showed the highest activity with a MIC value of 2.1 μM for all tested Candida spp., two Cryptococcus spp., two Fusarium spp., and one Neoscytalidium spp. strain. Therefore, these amphiphilic molecules with the perylene moiety and cationic ammonium side chains represent important structural features for the development of novel antifungals.