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Peer Review Statement
in
Synchrotrons
2023
All papers published in this volume have been reviewed through processes administered by the Editors. Reviews were conducted by expert referees to the professional and scientific standards expected of a proceedings journal published by IOP Publishing Publishing.• Type of peer review: Single Anonymous• Conference submission management system: Morressier• Number of submissions received: 117• Number of submissions sent for review: 117• Number of submissions accepted: 111• Acceptance Rate (Submissions Accepted / Submissions Received × 100): 94.9• Average number of reviews per paper: 2• Total number of reviewers involved: 191• Contact person for queries:Name: Nawin JuntongEmail: nawin@slri.or.thAffiliation: Synchrotron Light Research Institute - Accelerator
Journal Article
X-ray elemental mapping techniques for elucidating the ecophysiology of hyperaccumulator plants
by
Kopittke, Peter M
,
Harris, Hugh H
,
Paterson, David J
in
case studies
,
chemistry
,
cryo‐fixation
2018
Contents Summary 432 I. Introduction 433 II. Preparation of plant samples for X-ray micro-analysis 433 III. X-ray elemental mapping techniques 438 IV. X-ray data analysis 442 V. Case studies 443 VI. Conclusions 446 Acknowledgements 449 Author contributions 449 References 449 SUMMARY: Hyperaccumulators are attractive models for studying metal(loid) homeostasis, and probing the spatial distribution and coordination chemistry of metal(loid)s in their tissues is important for advancing our understanding of their ecophysiology. X-ray elemental mapping techniques are unique in providing in situ information, and with appropriate sample preparation offer results true to biological conditions of the living plant. The common platform of these techniques is a reliance on characteristic X-rays of elements present in a sample, excited either by electrons (scanning/transmission electron microscopy), protons (proton-induced X-ray emission) or X-rays (X-ray fluorescence microscopy). Elucidating the cellular and tissue-level distribution of metal(loid)s is inherently challenging and accurate X-ray analysis places strict demands on sample collection, preparation and analytical conditions, to avoid elemental redistribution, chemical modification or ultrastructural alterations. We compare the merits and limitations of the individual techniques, and focus on the optimal field of applications for inferring ecophysiological processes in hyperaccumulator plants. X-ray elemental mapping techniques can play a key role in answering questions at every level of metal(loid) homeostasis in plants, from the rhizosphere interface, to uptake pathways in the roots and shoots. Further improvements in technological capabilities offer exciting perspectives for the study of hyperaccumulator plants into the future.
Journal Article
Radiation damage and dose limits in serial synchrotron crystallography at cryo- and room temperatures
by
Rosenthal, Martin
,
Coquelle, Nicolas
,
Bury, Charles S.
in
Biological Sciences
,
Biophysics and Computational Biology
,
Chemical bonds
2020
Radiation damage limits the accuracy of macromolecular structures in X-ray crystallography. Cryogenic (cryo-) cooling reduces the global radiation damage rate and, therefore, became the method of choice over the past decades. The recent advent of serial crystallography, which spreads the absorbed energy over many crystals, thereby reducing damage, has rendered room temperature (RT) data collection more practical and also extendable to microcrystals, both enabling and requiring the study of specific and global radiation damage at RT. Here, we performed sequential serial raster-scanning crystallography using a microfocused synchrotron beam that allowed for the collection of two series of 40 and 90 full datasets at 2- and 1.9-Å resolution at a dose rate of 40.3 MGy/s on hen egg white lysozyme (HEWL) crystals at RT and cryotemperature, respectively. The diffraction intensity halved its initial value at average doses (D
1/2) of 0.57 and 15.3 MGy at RT and 100 K, respectively. Specific radiation damage at RT was observed at disulfide bonds but not at acidic residues, increasing and then apparently reversing, a peculiar behavior that can be modeled by accounting for differential diffraction intensity decay due to the nonuniform illumination by the X-ray beam. Specific damage to disulfide bonds is evident early on at RT and proceeds at a fivefold higher rate than global damage. The decay modeling suggests it is advisable not to exceed a dose of 0.38 MGy per dataset in static and time-resolved synchrotron crystallography experiments at RT. This rough yardstick might change for proteins other than HEWL and at resolutions other than 2 Å.
Journal Article
Identification of LiH and nanocrystalline LiF in the solid–electrolyte interphase of lithium metal anodes
2021
A comprehensive understanding of the solid–electrolyte interphase (SEI) composition is crucial to developing high-energy batteries based on lithium metal anodes. A particularly contentious issue concerns the presence of LiH in the SEI. Here we report on the use of synchrotron-based X-ray diffraction and pair distribution function analysis to identify and differentiate two elusive components, LiH and LiF, in the SEI of lithium metal anodes. LiH is identified as a component of the SEI in high abundance, and the possibility of its misidentification as LiF in the literature is discussed. LiF in the SEI is found to have different structural features from LiF in the bulk phase, including a larger lattice parameter and a smaller grain size (<3 nm). These characteristics favour Li
+
transport and explain why an ionic insulator, like LiF, has been found to be a favoured component for the SEI. Finally, pair distribution function analysis reveals key amorphous components in the SEI.
X-ray diffraction and Rietveld refinement analysis confirm the presence of LiH in the solid–electrolyte interphase of lithium metal anodes.
Journal Article
Linking void and interphase evolution to electrochemistry in solid-state batteries using operando X-ray tomography
by
Shevchenko, Pavel
,
Cortes, Francisco Javier Quintero
,
De Carlo, Francesco
in
639/301/299/891
,
639/301/930/2735
,
639/638/161/891
2021
Despite progress in solid-state battery engineering, our understanding of the chemo-mechanical phenomena that govern electrochemical behaviour and stability at solid–solid interfaces remains limited compared to at solid–liquid interfaces. Here, we use operando synchrotron X-ray computed microtomography to investigate the evolution of lithium/solid-state electrolyte interfaces during battery cycling, revealing how the complex interplay among void formation, interphase growth and volumetric changes determines cell behaviour. Void formation during lithium stripping is directly visualized in symmetric cells, and the loss of contact that drives current constriction at the interface between lithium and the solid-state electrolyte (Li
10
SnP
2
S
12
) is quantified and found to be the primary cause of cell failure. The interphase is found to be redox-active upon charge, and global volume changes occur owing to partial molar volume mismatches at either electrode. These results provide insight into how chemo-mechanical phenomena can affect cell performance, thus facilitating the development of solid-state batteries.
Understanding electrochemical behaviour and stability at solid–solid interfaces remains challenging. Operando synchrotron X-ray computed microtomography loss reveals that reconfiguration of interfacial contact is critical to explain cell failure during solid-state battery cycling.
Journal Article
Unprecedented non-hysteretic superelasticity of 001-oriented NiCoFeGa single crystals
2020
Superelasticity associated with the martensitic transformation has found a broad range of engineering applications
1
,
2
. However, the intrinsic hysteresis
3
and temperature sensitivity
4
of the first-order phase transformation significantly hinder the usage of smart metallic components in many critical areas. Here, we report a large superelasticity up to 15.2% strain in [001]-oriented NiCoFeGa single crystals, exhibiting non-hysteretic mechanical responses, a small temperature dependence and high-energy-storage capability and cyclic stability over a wide temperature and composition range. In situ synchrotron X-ray diffraction measurements show that the superelasticity is correlated with a stress-induced continuous variation of lattice parameter accompanied by structural fluctuation. Neutron diffraction and electron microscopy observations reveal an unprecedented microstructure consisting of atomic-level entanglement of ordered and disordered crystal structures, which can be manipulated to tune the superelasticity. The discovery of the large elasticity related to the entangled structure paves the way for exploiting elastic strain engineering and development of related functional materials.
NiCoFeGa single crystals exhibit large non-hysteretic superelasticity over broad temperature and composition ranges. It is attributed to the continuous phase transition with applied stress, which is related to the fluctuation of entangled ordered and disordered crystal structures.
Journal Article
The interplay between thermodynamics and kinetics in the solid-state synthesis of layered oxides
2020
In the synthesis of inorganic materials, reactions often yield non-equilibrium kinetic byproducts instead of the thermodynamic equilibrium phase. Understanding the competition between thermodynamics and kinetics is a fundamental step towards the rational synthesis of target materials. Here, we use in situ synchrotron X-ray diffraction to investigate the multistage crystallization pathways of the important two-layer (P2) sodium oxides Na
0.67
MO
2
(M = Co, Mn). We observe a series of fast non-equilibrium phase transformations through metastable three-layer O3, O3′ and P3 phases before formation of the equilibrium two-layer P2 polymorph. We present a theoretical framework to rationalize the observed phase progression, demonstrating that even though P2 is the equilibrium phase, compositionally unconstrained reactions between powder precursors favour the formation of non-equilibrium three-layered intermediates. These insights can guide the choice of precursors and parameters employed in the solid-state synthesis of ceramic materials, and constitutes a step forward in unravelling the complex interplay between thermodynamics and kinetics during materials synthesis.
Understanding the competition between thermodynamics and kinetics is crucial for the rational synthesis of inorganic materials. The synthesis of two-layer sodium metal oxides is investigated by in situ synchrotron XRD and a model is developed to rationalize why the observed phase progression proceeds through non-equilibrium three-layered intermediates.
Journal Article
Keyhole threshold and morphology in laser melting revealed by ultrahigh-speed x-ray imaging
by
Parab, Niranjan
,
Cunningham, Ross
,
Kantzos, Christopher
in
Additive manufacturing
,
Conduction
,
Keyholes
2019
We used ultrahigh-speed synchrotron x-ray imaging to quantify the phenomenon of vapor depressions (also known as keyholes) during laser melting of metals as practiced in additive manufacturing. Although expected from welding and inferred from postmortem cross sections of fusion zones, the direct visualization of the keyhole morphology and dynamics with high-energy x-rays shows that (i) keyholes are present across the range of power and scanning velocity used in laser powder bed fusion; (ii) there is a well-defined threshold from conduction mode to keyhole based on laser power density; and (iii) the transition follows the sequence of vaporization, depression of the liquid surface, instability, and then deep keyhole formation. These and other aspects provide a physical basis for three-dimensional printing in laser powder bed machines.
Journal Article
Characterization of just one atom using synchrotron X-rays
2023
Since the discovery of X-rays by Roentgen in 1895, its use has been ubiquitous, from medical and environmental applications to materials sciences
1
–
5
. X-ray characterization requires a large number of atoms and reducing the material quantity is a long-standing goal. Here we show that X-rays can be used to characterize the elemental and chemical state of just one atom. Using a specialized tip as a detector, X-ray-excited currents generated from an iron and a terbium atom coordinated to organic ligands are detected. The fingerprints of a single atom, the L
2,3
and M
4,5
absorption edge signals for iron and terbium, respectively, are clearly observed in the X-ray absorption spectra. The chemical states of these atoms are characterized by means of near-edge X-ray absorption signals, in which X-ray-excited resonance tunnelling (X-ERT) is dominant for the iron atom. The X-ray signal can be sensed only when the tip is located directly above the atom in extreme proximity, which confirms atomically localized detection in the tunnelling regime. Our work connects synchrotron X-rays with a quantum tunnelling process and opens future X-rays experiments for simultaneous characterizations of elemental and chemical properties of materials at the ultimate single-atom limit.
Using a specialized tip as a detector, the fingerprints of a single atom of iron and terbium are observed in synchrotron X-ray absorption spectra, allowing elemental and chemical characterization one atom at a time.
Journal Article
Synchrotron structural biology at SSRL, the beginning and beyond
Synchrotron X‐ray structural biology has developed into a worldwide, highly productive enterprise whose capabilities are providing thousands of users annually with the means to make innovative and outstanding scientific discoveries based on biological structure and function, impacting areas of human health, bioenergy and sustainability and many others. This special virtual issue of Journal of Synchrotron Radiation (https://journals.iucr.org/special_issues/2025/ssrlprotein) includes a series of contributed papers from scientists at structural biology synchrotron centers worldwide that describe capabilities, scientific discoveries and future directions. In my article, I will start with a focus on the first macromolecular crystallography studies at SSRL that were published in 1976, followed by developments in anomalous scattering and multi‐wavelength phasing. I will then highlight some technology and methodology developments including X‐ray detectors and beamline automation, which were key in building robust, sustainable resources at SSRL and other synchrotron radiation facilities for the structural biology user community. I will highlight other related elements including accelerator R&D, consider some of the overarching factors which I believe have been important for the sustained success and growth of this enterprise for 50 years and counting, and highlight some of the indicators of the enormous success of this venture. Throughout I will comment upon some of the new developments and trends that are emerging. It has been 50 years since the publication in PNAS of our first results on the utilization and demonstrated benefits of synchrotron radiation for macromolecular crystallography. In this brief article, I offer some personal observations and comments about that early research at Stanford and the Stanford Synchrotron Radiation Project (SSRP, later renamed SSRL), how it evolved, and consider key factors in how and why synchrotron radiation ultimately catalyzed a new and transformational paradigm for study of the structure of biomolecules.
Journal Article