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The Sahara Desert is characterized by extreme environmental conditions, which are a unique challenge for life. Cyanobacteria are key players in the colonization of bare soils and form assemblages with other microorganisms in the top millimetres, establishing biological soil crusts (biocrusts) that cover most soil surfaces in deserts, which have important roles in the functioning of drylands. However, knowledge of biocrusts from these extreme environments is limited. Therefore, to study cyanobacterial community composition in biocrusts from the Sahara Desert, we utilized a combination of methodologies in which taxonomic assignation, for next-generation sequencing of soil samples, was based on phylogenetic analysis (16S rRNA gene) in parallel with morphological identification of cyanobacteria in natural samples and isolates from certain locations. Two close locations that differed in microenvironmental conditions were analysed. One was a dry salt lake (a “chott”), and the other was an extension of sandy, slightly saline soil. Differences in cyanobacterial composition between the sites were found, with a clear dominance of Microcoleus spp. in the less saline site, while the chott presented a high abundance of heterocystous cyanobacteria as well as the filamentous non-heterocystous Pseudophormidium sp. and the unicellular cf. Acaryochloris. The cyanobacteria found in our study area, such as Microcoleus steenstrupii, Microcoleus vaginatus, Scytonema hyalinum, Tolypothrix distorta, and Calothrix sp., are also widely distributed in other geographic locations around the world, where the conditions are less severe. Our results, therefore, indicated that some cyanobacteria can cope with polyextreme conditions, as confirmed by bioassays, and can be considered extremotolerant, being able to live in a wide range of conditions.

The biocontrol potential of three native soil cyanobacteria from biological soil crusts (Nostoc commune, Scytonema hyalinum, and Tolypothrix distorta) was tested by means of in vitro mycelial growth inhibition assays for eighteen cyanobacteria-based products against three phytopathogenic soilborne fungi (Phytophthora capsici, Pythium aphanidermatum, and Fusarium oxysporum f. sp. radicis-cucumerinum). Three cyanobacteria-based production factors were considered: (i) cyanobacterium strain, (ii) cyanobacterial culture growth phase, and (iii) different post-harvest treatments: raw cultures, cyanobacterial filtrates, and cyanobacterial extracts. Results showed that any of the factors considered are key points for successfully inhibiting fungal growth. N. commune showed the highest growth inhibition rates for the three phytopathogens; stationary phase treatments produced higher inhibition percentages than logarithmic ones; and all the post-harvest treatments of N. commune at the stationary phase inhibited the growth of P. capsici, up to 77.7%. Thus, N. commune products were tested in planta against P. capsici, but none of the products showed efficacy in delaying the onset nor reducing the damage due to P. capsici, demonstrating the complexity of the in planta assay’s success and encouraging further research to design an appropriate scaling up methodology.

As productive biofilms are increasingly gaining interest in research, the quantitative monitoring of biofilm formation on- or offline for the process remains a challenge. Optical coherence tomography (OCT) is a fast and often used method for scanning biofilms, but it has difficulty scanning through more dense optical materials. X-ray microtomography (μCT) can measure biofilms in most geometries but is very time-consuming. By combining both methods for the first time, the weaknesses of both methods could be compensated. The phototrophic cyanobacterium Tolypothrix distorta was cultured in a moving bed photobioreactor inside a biocarrier with a semi-enclosed geometry. An automated workflow was developed to process µCT scans of the biocarriers. This allowed quantification of biomass volume and biofilm-coverage on the biocarrier, both globally and spatially resolved. At the beginning of the cultivation, a growth limitation was detected in the outer region of the carrier, presumably due to shear stress. In the later phase, light limitations could be found inside the biocarrier. µCT data and biofilm thicknesses measured by OCT displayed good correlation. The latter could therefore be used to rapidly measure the biofilm formation in a process. The methods presented here can help gain a deeper understanding of biofilms inside a process and detect any limitations.

There is increasing evidence that fluvial systems are influenced by anthropogenic factors, and disturbance due to pollution and other human interference gives rise to specific problems. It is now imperative that we develop and apply novel and effective ways which allow us to monitor water quality. The present study was planned as part of a programme to develop biological monitoring methods to assess nutrient characteristics of upland calcareous streams and rivers. Phototrophs respond to environmental changes over a period of time, so organisms sampled at one time can potentially provide almost as much information about nutrients in the water as a number of individual chemical measurements. Phosphatase activity is often a good indicator of phosphorus limitation, and field materials could be used to study changes in nutrients dynamics. The calcareous River Muga, north-east Spain, at a site 10 km downstream from its source in the Pyrenees, was therefore chosen for the present study of surface phosphatase activities of the main cyanobacterial communities at different seasons to assess P limitation and establish the suitability of this method for use in monitoring catchment processes. Here we report seasonal changes of phosphatase activity in field populations of Schizothrix coriacea, Rivularia biasolettiana, Tolypothrix distorta var. penicillata and Nostoc verrucosum. All four cyanobacteria showed marked surface phosphomonoesterase and phosphodiesterase activity on each sampling period. Michaelis-Menten kinetic studies showed similar K m values for the four species suggesting similar affinity for organic P substrates. Light had no effect on phosphatase activities, indicating that there is no need to consider this factor in short-term field assays. However, there was an increase in phosphomonoesterase activity of Rivularia with rise in temperature over the range 10-35°C, which suggests adaptation to the frequent temperature changes in nature. Phosphorus limitation seems the main chemical factor influencing phototrophs in R. Muga. Combined observations on macroscopically visible phototrophs with assays of surface phosphatase activity provide a valuable means of assessing long-term changes in a catchment.

Composite soil samples from 7 sites on San Nicolas Island were evaluated quantitatively and qualitatively for the presence of cyanobacteria and eukaryotic microalgae. Combined data demonstrated a rich algal flora with 19 cyanobacterial and 19 eukaryotic microalgal genera being identified, for a total of 56 species. Nine new species were identified and described among the cyanobacteria and the eukaryotic microalgae that were isolated: Leibleinia edaphica, Aphanothece maritima, Chroococcidiopsis edaphica, Cyanosarcina atroveneta, Hassallia californica, Hassallia pseudoramosissima, Microchaete terrestre, Palmellopsis californicus, and Pseudotetracystis compactis. Distinct distributional patterns of algal taxa existed among sites on the island and among soil algal floras of western North America. Some algal taxa appeared to be widely distributed across many desert regions, including Microcoleus vaginatus, Nostoc punctiforme, Nostoc paludosum, and Tolypothrix distorta, Chlorella vulgaris, Diplosphaera cf. chodatii, Myrmecia astigmatica, Myrmecia biatorellae, Hantzschia amphioxys, and Luticola mutica. Some taxa share a distinctly southern distribution with soil algae from southern Arizona, southern California, and Baja California (e.g., Scenedesmus deserticola and Eustigmatos magnus). The data presented herein support the view that the cyanobacterial and microalgal floras of soil crusts possess significant biodiversity, much of it previously undescribed.

The development of epilithic cyanobacteria communities in a Mediterranean calcareous stream in the province of Murcia (SE Spain) was studied during the course of one year in an attempt to clarify the environmental variables that influence the production of microcystins. The predominant cyanobacteria were species of Rivularia, which formed conspicuous colonies throughout the year. Seasonally, other species were abundant: Schizothrix fasciculata, Tolypothrix distorta and Phormidium splendidum. All the species collected produced microcystins to a varying degree (up to five varieties), while the benthic community as a whole produced concentrations as high as 20.45 mg m super(-2). At the same time, the presence of microcystins dissolved in water was confirmed. Among environmental variables, air temperature and silicate content were positively and strongly correlated with total microcystins, while nitrite, nitrate, orthophosphate, calcium and flow were negatively correlated with them. Dissolved microcystins were negatively correlated with microcystin LR, P.A.R. and total phosphorus and positively with rainfall. The production of microcystin YR seems to be regulated by different factors from those regulating the other main varieties (microcystin LR and microcystin RR). The data obtained indicate that all the tested benthic cyanobacteria produced microcystins in this shallow calcareous stream, which may contribute to their predominance in the prevailing conditions. The accumulation of microcystins in mucilaginous colonies of other groups of algae poses new questions concerning the possible ecological function of these compounds and needs further study.

Issue Title: The Atna River: Studies in an Alpine-Boreal Watershed The objective of this study in River Atna, Norway, was to analyse the spatial and temporal variation in species composition and diversity of the periphyton community in a pristine sub-alpine / boreal watercourse. The variations in the biotic parameters were related to selected environmental factors. We addressed epilithic algae and species living epiphytic on epilithic algae and submerged bryophytes. The sampling sites were located in the alpine, northern boreal, and mid boreal biomes. There was considerable spatial variation in species composition and diversity. This variation showed close correlation with natural gradients in water temperature and nutrient concentration. Three or four periphyton community categories could be distinguished in terms of species composition, diversity, and environmental variables. At high altitudes (1150-740 m a.s.l.) in cold water temperatures and extremely low nutrient contents, there was very low species diversity, only including algae known from ultra oligothrophic cold waters, e.g. Scytonematopsis starmachii (cyanobacteria) and Klebshormidium rivulare (green algae). The second category, at medium altitudes (701-522 m a.s.l.), was characterised by somewhat higher water temperatures and nutrient contents, and the species diversity was higher. This category included algae known from somewhat richer waters, e.g. Stigonema mamillosum (cyanobacteria) and Zygnema spp.(green algae). The third category was located at approx. 522 m a.s.l., had low water temperatures, relatively high alkalinity, and was characterised by Tolypothrix distorta (cyanobacteria) and Ulothrix zonata (green algae). A possible fourth category was found in the lower part of the river (350 m a.s.l.), where periphyton was distinguished by high diversity. At the individual sampling localities, species diversity showed strong seasonal variation, but otherwise high temporal stability. Over the 12 years of observations, there was only a weak temporal trend; towards species initially occurring only at low altitudes and high nutrient content. The combination of high temporal stability and high spatial variability, correlating closely with environmental gradients, is the main reason why periphyton observations have become an important constituent in water quality assessment.[PUBLICATION ABSTRACT]

This study is devoted to the ecomorphology and ultrastructure of cyanophytes on limestone rocks collected in the Szopczański Gorge (Pieniny Mountains) during the years 2006-2008. There were selected cyanophyte species for examination such as following: Nostoc microscopicum, Phormidium favosum, Leptolyngbya foveolarum, Tolypothrix distorta var. penicillatum, Pseudanabaena catenata. The ultrastructural analysis (TEM) confirmed that the structure and placement of the thylakoids is genus/species specific.

A series of experiments on heterocyst production in Anabaena variabilis provides some strong indirect evidence for the role of heterocysts in nitrogen fixation. Of the algae tested (Anabaena variabilis, A. inaequalis, A. cylindrica, A. flos-aquae, Tolypothrix distorta, Gloeotrichia echinulata, Aphanizomenon flos-aquae, Oscillatoria sp., and Microcystis aeruginosa), only those with heterocysts grew in a nitrate-free medium. Growth in the nitratefree medium was accompanied by an increase in heterocysts. Hetcrocyst formation in A. variabilis was evident 24 hr after transfer from a nitrate-containing to a nitrate-free medium. The number of heterocysts was altered by changes in the nitrogen source. Numbers were lowest when NH sub(4)-N was used as a nitrogen source and highest when nitrogen (N sub(2)-N) was derived from the atmosphere. Heterocyst numbers could also be regulated by controlling the concentration of NO sub(3)-N in the medium. Heterocyst production depended on the absence of combined nitrogen and the presence of phosphate. Data are presented on the occurrence of blue-green algae (with heterocysts) in Lake Erie and the environmental conditions apparently necessary for them to become dominant.