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48 result(s) for "Visualization, Communication, and Evidence"
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The Accumulated Persistence Function, a New Useful Functional Summary Statistic for Topological Data Analysis, With a View to Brain Artery Trees and Spatial Point Process Applications
We start with a simple introduction to topological data analysis where the most popular tool is called a persistence diagram. Briefly, a persistence diagram is a multiset of points in the plane describing the persistence of topological features of a compact set when a scale parameter varies. Since statistical methods are difficult to apply directly on persistence diagrams, various alternative functional summary statistics have been suggested, but either they do not contain the full information of the persistence diagram or they are two-dimensional functions. We suggest a new functional summary statistic that is one-dimensional and hence easier to handle, and which under mild conditions contains the full information of the persistence diagram. Its usefulness is illustrated in statistical settings concerned with point clouds and brain artery trees. The supplementary materials include additional methods and examples, technical details, and the R code used for all examples.
Fast Computation of Tukey Trimmed Regions and Median in Dimension p > 2
Given data in , a Tukey κ-trimmed region is the set of all points that have at least Tukey depth κ w.r.t. the data. As they are visual, affine equivariant and robust, Tukey regions are useful tools in nonparametric multivariate analysis. While these regions are easily defined and interpreted, their practical use in applications has been impeded so far by the lack of efficient computational procedures in dimension p > 2. We construct two novel algorithms to compute a Tukey κ-trimmed region, a naïve one and a more sophisticated one that is much faster than known algorithms. Further, a strict bound on the number of facets of a Tukey region is derived. In a large simulation study the novel fast algorithm is compared with the naïve one, which is slower and by construction exact, yielding in every case the same correct results. Finally, the approach is extended to an algorithm that calculates the innermost Tukey region and its barycenter, the Tukey median. Supplementary materials for this article are available online.
Multivariate Outliers and the O3 Plot
Identifying and dealing with outliers is an important part of data analysis. A new visualization, the O3 plot, is introduced to aid in the display and understanding of patterns of multivariate outliers. It uses the results of identifying outliers for every possible combination of dataset variables to provide insight into why particular cases are outliers. The O3 plot can be used to compare the results from up to six different outlier identification methods. There is an package OutliersO3 implementing the plot. The article is illustrated with outlier analyses of German demographic and economic data. Supplementary materials for this article are available online.
trackr: A Framework for Enhancing Discoverability and Reproducibility of Data Visualizations and Other Artifacts in R
Research is an incremental, iterative process, with new results relying and building upon previous ones. Scientists need to find, retrieve, understand, and verify results to confidently extend them, even when the results are their own. We present the trackr framework for organizing, automatically annotating, discovering, and retrieving results. We identify sources of automatically extractable metadata for computational results, and we define an extensible system for organizing, annotating, and searching for results based on these and other metadata. We present an open-source implementation of these concepts for plots, computational artifacts, and woven dynamic reports generated in the R statistical computing language. Supplementary materials for this article are available online.
Framed! Reproducing and Revisiting 150-Year-Old Charts
The Statistical Atlases published by the Census Bureau in the late 1800s utilized a number of novel methods for displaying data. In this paper, we examine the use of framed spine and mosaic plots used in two plates of the Statistical Atlas of 1870. We use forensic statistics to recreate the data using available census information, and then use that data to create framed charts using modern plotting methods. We then examine the effectiveness of the framed charts compared to other alternatives with a user study. The data and code for this study are available online.
Using Approximation Algorithms to Build Evidence Factors and Related Designs for Observational Studies
Observational or nonrandomized studies of treatment effects are often constructed with the aid of polynomial-time algorithms that optimally form matched treatment-control pairs or matched sets. Because each observational comparison may potentially be affected by bias, investigators often reinforce a single comparison with an additional comparison that is unlikely to be affected by the same biases, for instance using multiple control groups or evidence factors or control + instrument designs. Use of two comparisons affected by different biases may detect bias if the two comparisons disagree, or may show that two comparisons with different weakness concur in their conclusions. Even this simplest addition-a second comparison-creates design problems without polynomial-time solutions. Faced with a problem that no polynomial-time algorithm can solve, a so-called approximation algorithm is a type of compromise: it provides a solution in polynomial time that is provably not much worse than the unattainable optimal solution. Building upon existing techniques for related problems in operations research, we develop an approximation algorithm for minimum distance matching with near-fine balance for three comparison groups. This algorithm is a practical approach to most observational designs that add a second comparison. The method is applied to an observational study of the effects of side airbags on injury severity in the U.S. Fatality Analysis Reporting System. For many car makes and models, side airbags were initially unavailable, then later available as optional equipment for an additional fee, then still later provided as standard equipment. Within sets matched for make and model of car, for safety belt use, for direction of impact, and other covariates, we compare crashes in these three periods, where each comparison has different limitations. The method is implemented in the R package approxmatch, whose example reproduces some of the calculations. Supplementary materials for this article are available online.
Directional Spectra-Based Clustering for Visualizing Patterns of Ocean Waves and Winds
The energy distribution of wind-driven ocean waves is of great interest in marine science. Discovering the generating process of ocean waves is often challenging and the direction is the key for a better understanding. Typically, wave records are transformed into a directional spectrum which provides information about the wave energy distribution across different frequencies and directions. Here, we propose a new time series clustering method for a series of directional spectra to extract the spectral features of ocean waves and develop informative visualization tools to summarize identified wave clusters. We treat directional distributions as functional data of directions and construct a directional functional boxplot to display the main directional distribution of the wave energy within a cluster. We also trace back when these spectra were observed, and we present color-coded clusters on a calendar plot to show their temporal variability. For each identified wave cluster, we analyze wind speed and wind direction hourly to investigate the link between wind data and wave directional spectra. The performance of the proposed clustering method is evaluated by simulations and illustrated by a real-world dataset from the Red Sea. Supplementary materials for this article are available online.
Visualising Medical Research: Exploring the Influence of Infographics on Professional Dissemination
Objective . This study explores the impact of infographics on the professional dissemination of medical research. Recognising the burgeoning volume of data in the medical domain, this research aims to bridge the gap by investigating the efficacy of infographics in rendering complex medical concepts understandable to diverse audiences, including policymakers, patients, and the public. Design . The study uses a cross‐sectional survey to assess medical professionals’ familiarity with infographic design and data visualisation principles. Setting . The research targets medical professionals with published articles across various subfields, including Clinical Medicine, Epidemiology, Pharmacology, Healthcare Management, Medical Imaging, and Public Health. Method . Data collection involves an online survey distributed to potential participants through professional networks and research institutions. The survey encompasses Likert‐scale questions and demographic variables. Ethical considerations include obtaining approval from the institutional review board, ensuring participant consent, and maintaining data anonymity and confidentiality. Results . Demographic analysis reveals a diverse participant profile, with 58.7% male and 41.3% female respondents, spanning various age groups, professional experiences, and geographic locations. Assessing familiarity with infographic design and data visualisation principles demonstrates respondents’ proficiency in certain areas while highlighting potential areas for improvement. Conclusion . The study underscores the multifaceted benefits of infographics in research dissemination, as medical professionals perceive. Infographics can effectively convey various kinds of medical research information across diverse platforms and channels.
Harnessing Telemedicine for the Provision of Health Care: Bibliometric and Scientometric Analysis
In recent decades, advances in information technology have given new momentum to telemedicine research. These advances in telemedicine range from individual to population levels, allowing the exchange of patient information for diagnosis and management of health problems, primary care prevention, and education of physicians via distance learning. This scientometric investigation aims to examine collaborative research networks, dominant research themes and disciplines, and seminal research studies that have contributed most to the field of telemedicine. This information is vital for scientists, institutions, and policy stakeholders to evaluate research areas where more infrastructural or scholarly contributions are required. For analyses, we used CiteSpace (version 4.0 R5; Drexel University), which is a Java-based software that allows scientometric analysis, especially visualization of collaborative networks and research themes in a specific field. We found that scholarly activity has experienced a significant increase in the last decade. Most important works were conducted by institutions located in high-income countries. A discipline-specific shift from radiology to telestroke, teledermatology, telepsychiatry, and primary care was observed. The most important innovations that yielded a collaborative influence were reported in the following medical disciplines, in descending order: public environmental and occupational health, psychiatry, pediatrics, health policy and services, nursing, rehabilitation, radiology, pharmacology, surgery, respiratory medicine, neurosciences, obstetrics, and geriatrics. Despite a continuous rise in scholarly activity in telemedicine, we noticed several gaps in the literature. For instance, all the primary and secondary research central to telemedicine was conducted in the context of high-income countries, including the evidence synthesis approaches that pertained to implementation aspects of telemedicine. Furthermore, the research landscape and implementation of telemedicine infrastructure are expected to see exponential progress during and after the COVID-19 era.
Effects of Social Skills Training for Adolescents on the Autism Spectrum: a Randomized Controlled Trial of the Polish Adaptation of the PEERS® Intervention via Hybrid and In-Person Delivery
The study examined the efficacy of the Polish adaptation of the PEERS® curriculum for adolescents on the autism spectrum. Twenty-nine adolescents (aged 11–16) were randomized into a Treatment and a Waitlist Control Group. Due to COVID-19-related restrictions, the Treatment Group received part of the intervention online (in hybrid mode). Results showed large effects of PEERS® increasing the teens’ social skills, knowledge about social skills, and the number of get-togethers with peers. Most of the effects were maintained over a six-month follow-up period. There was no impact of the delivery mode on the treatment effects. The study demonstrates the feasibility and efficacy of the Polish adaptation of PEERS® and encourages future research on the online/hybrid delivery of Social Skills Training.