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result(s) for
"ZMŚP"
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Integrating Postgresql and R: Open-Source Tools For Processing and Reporting Monitoring Data
by
Szpikowshi, Józef
,
Kruszyk, Robert
,
Dmowska, Anna
in
Data collection
,
Data management
,
Data processing
2025
Environmental monitoring requires effective data collection, management and presentation. With the increasing amount of monitoring data, it is becoming increasingly important to develop tools for effective data management and visualisation. This paper explores the potential of integrating the PostgreSQL database system with the R environment to automate the processing, analysis and reporting of multidimensional environmental data. The results of hydrological monitoring conducted as part of the Integrated Monitoring of the Natural Environment (ZMŚP) programme were used as a case study. The basic component of the ZMŚP programme’s IT system is a relational database, where the results of environmental monitoring are stored. This database serves as a data source for the data warehouse. The data processing process, which includes archiving, verification and aggregation, uses Structured Query Language (SQL) and the procedural language PL/pgSQL. In order to generate interactive visualisations and automate reporting, the R programming environment was used in conjunction with the R Markdown tool and the plotly library. The combination of the PostgreSQL system with the plotly package in the R environment offers a number of benefits in terms of data visualisation and analysis, while also serving as an example of the use of Online Analytical Processing (OLAP) tools in the analysis and presentation of environmental data. The use of open-source solutions not only significantly reduces implementation costs but also increases the availability of technology to a wide range of users, including public institutions involved in environmental monitoring.
Journal Article
Identification and Drought-Responsive Expression Analysis of the ZmSPS Gene Family in Maize and Preliminary Investigation of the ZmSPS3 Regulatory Network
by
Zhao, Wei
,
Guo, Baitao
,
Sun, Minghao
in
Abiotic stress
,
Agricultural production
,
Bioinformatics
2026
Sucrose phosphate synthase (SPS) is a key rate-limiting enzyme that regulates carbon partitioning and stress tolerance in plants. In this study, we systematically characterized the SPS gene family in maize (Zea mays L.) and identified key members and their interaction networks involved in drought responses. A total of seven ZmSPS genes were identified through genome-wide bioinformatics analyses. Motif composition, gene structure, phylogenetic relationships, and synteny analyses indicated that the ZmSPS gene family is highly conserved among monocot species. Promoter analysis revealed that the upstream regions of ZmSPS genes are enriched with multiple stress responsive cis-acting elements. Drought stress treatments combined with quantitative real-time PCR (RT-qPCR) analyses showed that the expression of ZmSPS3 was significantly upregulated with increasing stress duration. Furthermore, yeast two-hybrid assays demonstrated that ZmSPS3 physically interacts with protein kinases and F-box proteins. These interactions suggest a potential involvement of ZmSPS3 in post-translational modification and protein stability regulation during osmotic stress. As a potential candidate gene responsive to drought, ZmSPS3 provides a preliminary basis for understanding the complex drought-response networks in maize.
Journal Article