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Fitness of plants in a wide range of environmental conditions entailed (i) evolution of secondary metabolic pathways enabling utilization of photosynthate for the synthesis of a variety of biomolecules, thereby facilitating diverse eco-interactive functions, and (ii) evolution of structural features for the sequestration of such compounds away from the mainstream primary metabolism to prevent autotoxicity. This review summarizes features and applications of terpene and isoprenoid compounds, comprising the largest class of secondary metabolites. Many of these terpene and isoprenoid biomolecules happen to be high-value bioproducts. They are essential components of all living organisms that are chemically highly variant. They are constituents of primary (quinones, chlorophylls, carotenoids, steroids) as well as secondary metabolism compounds with roles in signal transduction, reproduction, communication, climatic acclimation, defense mechanisms and more. They comprise single to several hundreds of repetitive five-carbon units of isopentenyl diphosphate (IPP) and its isomer dimethylallyl diphosphate (DMAPP). In plants, there are two pathways that lead to the synthesis of terpene and isoprenoid precursors, the cytosolic mevalonic acid (MVA) pathway and the plastidic methylerythritol phosphate (MEP) pathway. The diversity of terpenoids can be attributed to differential enzyme and substrate specificities and to secondary modifications acquired by terpene synthases. The biological role of secondary metabolites has been recognized as pivotal in the survival and evolution of higher plants. Terpenes and isoprenoids find application in pharmaceutical, nutraceutical, synthetic chemistry, flavor fragrance, and possibly biofuel industries.

Sugarcane production benefitted from useful genes imparted from Saccharum spontaneum L. Interspecific hybrids were evaluated for sugar and biomass traits in three environments, including two plants and one ratoon crop. The objective was to estimate genetic parameters for traits in this population and to develop appropriate breeding strategies and germplasm for use in variety development in both the sugar and bioenergy industries. Heritability was highest with all three environments considered; however, the increase was minimal compared with estimates from the first ratoon crop, suggesting resources will be better spent selecting in the first ratoon crop. Significant differences (p < 0.05) found among families for sucrose content‐related traits warrant selecting first among families before selecting among genotypes within families for these traits. The same was not true for cane yield and its components. Heritability was low to moderate (> 0.3 < 0.47) for cane yield and its components and high (> 0.7) for all other traits, suggesting early selection in small plots could emphasize sucrose content‐related traits. Selecting intensely for a highly heritable trait in one stage can influence genetic variation of another trait in subsequent stages. Therefore, multivariate selection methods were employed that identified groups of genotypes with characteristics distinct to both industries. The S. spontaneum parents dominated trait variation in the hybrid population. Consequently, although genotypes with potential for the sugar industry would have to undergo rounds of backcrossing to recover good sugar characteristics, genotypes with immediate potential in the bioenergy industry were easily identified in this population. Core Ideas Sugarcane production for the sugar industry has benefitted from useful genes imparted from Saccharum spontaneum L. There is interest in exploiting S. spontaneum L. to improve production in the sugar and energy (biomass) industries. The resourcefulness of an interspecific hybrid population to produce germplasm for both industries was evaluated. Genotypes with immediate potential in the bioenergy industry were easily identified in this population. Genotypes with potential for the sugar industry would have to undergo backcrossing to recover good sugar attributes.

A facile, green and economical method for the high-efficiency utilization and functionalization of bamboo fiber could significantly improve the development of biomass industries. Here, we demonstrated a deep eutectic solvent, which formed from choline chloride (ChCl) and lactic acid (LC), as pretreating agent to delignify moso bamboo ( Phyllostachys pubescens ) and produce nanocellulose. The results showed that most of the lignin was efficiently removed (94.39%) and 91% of the cellulose was recovered after the moso bamboo was pretreated with ChCl–LC at 120 °C for 3 h with a solid-to-liquid ratio of 1:25. Furthermore, nanofibers with widths of 20–80 nm were successfully prepared from pretreated fibers after a simple mechanical process. SEM and AFM images showed that they have excellent aspect ratio. In addition, the obtained nanofibers could be used to fabricate strong films which feature a high tensile strength ranged from 163 to 213 MPa.

Genome-wide association studies (GWAS) have been used extensively to dissect the genetic regulation of complex traits in plants. These studies have focused largely on the analysis of common genetic variants despite the abundance of rare polymorphisms in several species, and their potential role in trait variation. Here, we conducted the first GWAS in Populus deltoides, a genetically diverse keystone forest species in North America and an important short rotation woody crop for the bioenergy industry. We searched for associations between eight growth and wood composition traits, and common and low-frequency single-nucleotide polymorphisms detected by targeted resequencing of 18 153 genes in a population of 391 unrelated individuals. To increase power to detect associations with low-frequency variants, multiple-marker association tests were used in combination with single-marker association tests. Significant associations were discovered for all phenotypes and are indicative that lowfrequency polymorphisms contribute to phenotypic variance of several bioenergy traits. Our results suggest that both common and low-frequency variants need to be considered for a comprehensive understanding of the genetic regulation of complex traits, particularly in species that carry large numbers of rare polymorphisms. These polymorphisms may be critical for the development of specialized plant feedstocks for bioenergy.

The worldwide fossil fuel reserves are rapidly and continually being depleted as a result of the rapid increase in global population and rising energy sector needs. Fossil fuels should not be used carelessly since they produce greenhouse gases, air pollution, and global warming, which leads to ecological imbalance and health risks. The study aims to discuss the alternative renewable energy source that is necessary to meet the needs of the global energy industry in the future. Both microalgae and macroalgae have great potential for several industrial applications. Algae-based biofuels can surmount the inadequacies presented by conventional fuels, thereby reducing the ‘food versus fuel’ debate. Cultivation of algae can be performed in all three systems; closed, open, and hybrid frameworks from which algal biomass is harvested, treated and converted into the desired biofuels. Among these, closed photobioreactors are considered the most efficient system for the cultivation of algae. Different types of closed systems can be employed for the cultivation of algae such as stirred tank photobioreactor, flat panel photobioreactor, vertical column photobioreactor, bubble column photobioreactor, and horizontal tubular photobioreactor. The type of cultivation system along with various factors, such as light, temperature, nutrients, carbon dioxide, and pH affect the yield of algal biomass and hence the biofuel production. Algae-based biofuels present numerous benefits in terms of economic growth. Developing a biofuel industry based on algal cultivation can provide us with a lot of socio-economic advantages contributing to a publicly maintainable result. This article outlines the third-generation biofuels, how they are cultivated in different systems, different influencing factors, and the technologies for the conversion of biomass. The benefits provided by these new generation biofuels are also discussed. The development of algae-based biofuel would not only change environmental pollution control but also benefit producers' economic and social advancement.

In the US Corn Belt, a recent doubling in commodity prices has created incentives for landowners to convert grassland to corn and soybean cropping. Here, we use land cover data from the National Agricultural Statistics Service Cropland Data Layer to assess grassland conversion from 2006 to 2011 in the Western Corn Belt (WCB): five states including North Dakota, South Dakota, Nebraska, Minnesota, and Iowa. Our analysis identifies areas with elevated rates of grass-to-corn/soy conversion (1.0–5.4% annually). Across the WCB, we found a net decline in grass-dominated land cover totaling nearly 530,000 ha. With respect to agronomic attributes of lands undergoing grassland conversion, corn/soy production is expanding onto marginal lands characterized by high erosion risk and vulnerability to drought. Grassland conversion is also concentrated in close proximity to wetlands, posing a threat to waterfowl breeding in the Prairie Pothole Region. Longer-term land cover trends from North Dakota and Iowa indicate that recent grassland conversion represents a persistent shift in land use rather than short-term variability in crop rotation patterns. Our results show that the WCB is rapidly moving down a pathway of increased corn and soybean cultivation. As a result, the window of opportunity for realizing the benefits of a biofuel industry based on perennial bioenergy crops, rather than corn ethanol and soy biodiesel, may be closing in the WCB.

Switchgrass (Panicum virgatum L.) has been the principal perennial herbaceous crop investigated for bioenergy production in North America given its high production potential, relatively low input requirements, and potential suitability for use on marginal lands. Few large trials have determined switchgrass yields at field scale on marginal lands, including analysis of production costs. Thus, a field‐scale study was conducted to develop realistic yield and cost estimates for diverse regions of the USA. Objectives included measuring switchgrass response to fertility treatments (0, 56, and 112 kg N ha−1) and generating corresponding estimates of production costs for sites with diverse soil and climatic conditions. Trials occurred in Iowa, New York, Oklahoma, South Dakota, and Virginia, USA. Cultivars and management practices were site specific, and field‐scale equipment was used for all management practices. Input costs were estimated using final harvest‐year (2015) prices, and equipment operation costs were estimated with the MachData model ( $2015). Switchgrass yields generally were below those reported elsewhere, averaging 6.3 Mg ha−1 across sites and treatments. Establishment stand percent ranged from 28% to 76% and was linked to initial year production. No response to N was observed at any site in the first production year. In subsequent seasons, N generally increased yields on well‐drained soils; however, responses to N were nil or negative on less well‐drained soils. Greatest percent increases in response to 112 kg N ha−1 were 57% and 76% on well‐drained South Dakota and Virginia sites, where breakeven prices to justify N applications were over $ 70 and $63 Mg−1, respectively. For some sites, typically promoted N application rates may be economically unjustified; it remains unknown whether a bioenergy industry can support the breakeven prices estimated for sites where N inputs had positive effects on switchgrass yield. Biomass production is considered potentially beneficial for utilizing and conserving marginal lands and helping transitional rural economies. Our study tested switchgrass yield and economic responses to fertility on marginal soils in the USA. Switchgrass responded to nitrogen on this former tobacco land in Virginia (note tobacco barn in background), but fertility was not economically justified at all sites (photograph, John Fike).

The food-feed competition is one of the complex challenges, and so are the ongoing climate change, land degradation and water shortage for realizing sustainable food production systems. By 2050 the global demand for animal products is projected to increase by 60% to 70%, and developing countries will have a lion’s share in this increase. Currently, ~800 million tonnes of cereals (one-third of total cereal production) are used in animal feed and by 2050 it is projected to be over 1.1 billion tonnes. Most of the increase in feed demand will be in developing countries, which already face many food security challenges. Additional feed required for the projected increased demand of animal products, if met through food grains, will further exacerbate the food insecurity in these countries. Furthermore, globally, the production, processing and transport of feed account for 45% of the greenhouse gas emissions from the livestock sector. This paper presents approaches for addressing these challenges in quest for making livestock sector more sustainable. The use of novel human-inedible feed resources such as insect meals, leaf meals, protein isolates, single cell protein produced using waste streams, protein hydrolysates, spineless cactus, algae, co-products of the biofuel industry, food wastes among others, has enormous prospects. Efficient use of grasslands also offers possibilities for increasing carbon sequestration, land reclamation and livestock productivity. Opportunities also exist for decreasing feed wastages by simple and well proven practices such as use of appropriate troughs, increase in efficiency of harvesting crop residues and their conversion to complete feeds especially in the form of densified feed blocks or pellets, feeding as per the nutrient requirements, among others. Available evidence have been presented to substantiate arguments that: (a) for successful and sustained adoption of a feed technology, participation of the private sector and a sound business plan are required, (b) for sustainability of the livestock production systems, it is also important to consider the consumption of animal products and a case has been presented to assess future needs of animal source foods based on their requirements for healthy living, (c) for dairy animals, calculation of Emission Intensity based on the lifetime lactation rather than one lactation may also be considered and (d) for assessment of the efficiency of livestock production systems a holistic approach is required that takes into consideration social dimensions and net human-edible protein output from the system in addition to carbon and water footprints.

•High-gravity technology leads to significant reduction of the ethanol recovery cost.•High-gravity leads to challenges in mixing and mass transfer.•Process design is a powerful tool to face the challenges in high gravity processes.•Challenges at high gravity call for the development of robust microorganisms. In brewing and ethanol-based biofuel industries, high-gravity fermentation produces 10–15% (v/v) ethanol, resulting in improved overall productivity, reduced capital cost, and reduced energy input compared to processing at normal gravity. High-gravity technology ensures a successful implementation of cellulose to ethanol conversion as a cost-competitive process. Implementation of such technologies is possible if all process steps can be performed at high biomass concentrations. This review focuses on challenges and technological efforts in processing at high-gravity conditions and how these conditions influence the physiology and metabolism of fermenting microorganisms, the action of enzymes, and other process-related factors. Lignocellulosic materials add challenges compared to implemented processes due to high inhibitors content and the physical properties of these materials at high gravity.

Belowground carbon (C) dynamics of terrestrial ecosystems play an important role in the global C cycle and thereby in climate regulation. Globally, land-use change is a major driver of changes in belowground C storage. The emerging bioenergy industry is likely to drive widespread land-use changes, including the replacement of annually tilled croplands with perennial bioenergy crops, and thereby to impact the climate system through alteration of belowground C dynamics. Mechanistic understanding of how land-use changes impact belowground C storage requires elucidation of changes in belowground C flows; however, altered belowground C dynamics following land-use change have yet to be thoroughly quantified through field measurements. Here, we show that belowground C cycling pathways of establishing perennial bioenergy crops (0- to 3.5-year-old miscanthus, switchgrass, and a native prairie mix) were substantially altered relative to row crop agriculture (corn-soy rotation); specifically, there were substantial increases in belowground C allocation (>400%), belowground biomass (400—750%), root-associated respiration (up to 2,500%), moderate reductions in litter inputs (20—40%), and respiration in root-free soil (up to 50%). This more active root-associated C cycling of perennial vegetation provides a mechanism for observed net C sequestration by these perennial ecosystems, as well as commonly observed increases in soil C under perennial bioenergy crops throughout the world. The more active root-associated belowground C cycle of perennial vegetation implies a climate benefit of grassland maintenance or restoration, even if biomass is harvested annually for bioenergy production.