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Biological desert crusts are relatively common in the arid deserts of the Sultanate of Oman; however, little is known about their microbial community composition and role in soil fertilization. We compared three crusts from geographically different locations for their soil texture, bacterial community structure, pigment composition and nitrogenase activity. The crusts were growing on alkaline (pH 7.6-8.7) loamy sand and silty loam soils. Microscopically, Microcoleus vaginatus was the most abundant cyanobacterium, but Nostoc and Scytonema types dominated in cultures. The 16S rRNA gene sequences showed close similarities in the crusts' bacterial composition, with 77-81% of the total clones belonging to cyanobacteria and the rest distributed among Alpha- and Deltaproteobacteria, Bacteriodetes, Gemmatimonas and Planctomycetes. Thirty-seven percent of the cyanobacterial clones were affiliated with heterocystous types such as Nostoc, Scytonema, Brasilonema and Petalonema. Chlorophyll a concentrations suggest a similar abundance of phototrophs in all crusts. High levels of the UVA sunscreen scytonemin were detected in the exposed crusts. The three crusts exhibited comparable acetylene reduction rates in the light and in the dark, with a maximum rate of 58.5±2.6 μmol C₂H₂ reduced m⁻² h⁻¹. We conclude that the crusts, regardless of their geographical location, were rich in heterocystous cyanobacteria that can fix nitrogen and could possibly improve soil stability and productivity.

ABSTRACT Biocrusts are the living skin of drylands, comprising diverse microbial communities that are essential to desert ecosystems. Despite there being extensive knowledge on biocrust ecosystem functions and lichen and moss biodiversity, little is known about factors structuring diversity among their microbial communities. We used amplicon-based metabarcode sequencing to survey microbial communities from biocrust surface and subsurface soils at four sites located within the Mojave Desert. Five biocrust types were examined: Light-algal/Cyanobacteria, Cyanolichen, Green-algal lichen, Smooth-moss and Rough-moss crust types. Microbial diversity in biocrusts was structured by several characteristics: (i) central versus southern Mojave sites displayed different community signatures, (ii) indicator taxa of plant-associated fungi (plant pathogens and wood saprotrophs) were identified at each site, (iii) surface and subsurface microbial communities were distinct and (iv) crust types had distinct indicator taxa. Network analysis ranked bacteria–bacteria interactions as the most connected of all within-domain and cross-domain interaction networks in biocrust surface samples. Actinobacteria, Proteobacteria, Cyanobacteria and Ascomycota functioned as hubs among all phyla. The bacteria Pseudonocardia sp. (Pseudonocardiales, Actinobacteria) and fungus Alternaria sp. (Pleosporales, Ascomycota) were the most connected had the highest node degree. Our findings provide crucial insights for dryland microbial community ecology, conservation and sustainable management. Geography, soil depth and biocrust type structure soil microbial communities and networks in Mojave Desert, USA.

Biological soil crusts (BSCs) are thought to be important in the fertility of arid lands as gateways for carbon (C) and nitrogen (N). Studies on the Colorado Plateau have shown that an incomplete internal N cycle operates in BSCs that results in significant exports of dissolved organic N, ammonia and nitrate into the bulk soil through percolating water, thus mechanistically explaining their role as a N gateway. It is not known if this pattern is found in other arid regions. To examine this, we measured rates of major biogeochemical N-transformations in a variety of BSCs collected from the Colorado Plateau and the Mojave, Sonoran and Chihuahuan Deserts. Dinitrogen fixation and aerobic ammonia oxidation were prominent transformations at all sites. We found anaerobic ammonia oxidation (anammox) rates to be below the detection limit in all cases, and at least 50-fold smaller than rates of N₂-fixation, making it an irrelevant process for these BSCs. Heterotrophic denitrification was also of little consequence for the flow of N, with rates at least an order of magnitude smaller than those of N₂-fixation. Thus we could confirm that despite the demonstrable differences in microbial community composition and soil material, BSCs from major biogeographic regions in arid North America displayed a remarkably consistent pattern of internal N cycling. The implications for arid land fertility drawn from previous studies in the Colorado Plateau appear applicable to BSCs across other arid regions of the Southwestern United States.

Abstract Biological soil crusts (BSCs) are found in drylands, cover ∼12% of the Earth's surface in arid and semi-arid lands and their destruction is considered an important promoter of desertification. These crusts are formed by the adhesion of soil particles to polysaccharides excreted mostly by filamentous cyanobacteria, which are the pioneers and main primary producers in BSCs. Desert BSCs survive in one of the harshest environments on Earth, and are exposed to daily fluctuations of extreme conditions. The cyanobacteria inhabiting these habitats must precisely read the changing conditions and predict, for example, the forthcoming desiccation. Moreover, they evolved a comprehensive regulation of multiple adaptation strategies to enhance their stress tolerance. Here, we focus on what distinguishes cyanobacteria able to revive after dehydration from those that cannot. While important progress has been made in our understanding of physiological, biochemical and omics aspects, clarification of the sensing, signal transduction and responses enabling desiccation tolerance are just emerging. We plot the trajectory of current research and open questions ranging from general strategies and regulatory adaptations in the hydration/desiccation cycle, to recent advances in our understanding of photosynthetic adaptation. The acquired knowledge provides new insights to mitigate desertification and improve plant productivity under drought conditions. Cyanobacteria inhabiting desert biological soil crusts, one of the harshest environments on Earth, have evolved mechanisms for predicting, sensing, signal transduction and cellular responses enabling their vegetative cells to cope with daily hydration/desiccation cycles and extreme conditions.

Biological soil crust (BSC) constitutes a consortium of cyanobacteria, algae, lichen, mosses, and heterotrophic microorganisms, forming a miniature ecosystem within the uppermost soil layer. The biomass of different organisms forming BSC and their activity changes along with succession. Previous studies focused primarily on BSC in hyper-arid/arid regions, whereas the ecophysiology of BSC in temperate climates is still not well recognized. In order to determine changes in overall microbial activity and photosynthetic biomass in BSC at different stages of the succession of inland sandy grasslands, we analyzed dehydrogenase activity and determined the content of photosynthetic pigments. We also compared these parameters between BSC developed on the dune ridges and aeolian blowouts in the initial stage of succession. Our study revealed a significant increase in both photosynthetic biomass and overall microbial activity in BSC as the succession of inland shifting sands progresses. We found that chl a concentration in BSC could be considered a useful quantitative indicator of both the presence of photoautotrophs and the degree of soil crust development in warm-summer humid continental climates. The photosynthetic biomass was closely related to increased microbial activity in BSC, which suggests that photoautotrophs constitute a major BSC component. Dune blowouts constitute environmental niches facilitating the development of BSC, compared to dune ridges. High biomass of microorganisms in the dune blowouts may be associated with a high amount of organic material and more favorable moisture conditions. We conclude that deflation fields are key places for keeping a mosaic of habitats in the area of shifting sands and can be a reservoir of microorganisms supporting further settlement of dune slopes by BSC.

The study explores the aftermath of a wastewater reservoir failure in a phosphate fertilizer industry, resulting in the release of acidic water containing phosphorus and sulfate compounds into the Ashalim stream’s Nature Reserve in the Judean desert, which affected the soil surface biological crusts (biocrusts) layer. The study aims to examine contamination effects on biocrusts over 3 years at two research sites along the stream, compare effects between contaminated sites, assess rehabilitation treatments, and examine their impact on soil characteristics. Hypotheses suggest significant damage to biocrusts due to acidic water flow, requiring human intervention for accelerated restoration. The results indicate adverse effects on biocrust properties, risking its key role in the desert ecosystem. The biocrust layer covering the stream’s ground surface suffered significant physical, chemical, and biological damage due to exposure to industrial process effluents. However, soil enrichment treatments, including biocrust components and organic material, show promising effects on biocrust recovery.

Biological soil crusts (biocrusts) play pivotal ecological roles in regulating nitrogen cycling within desert ecosystems. While acknowledging the essential role played by ammonia-oxidizing microorganisms in nitrogen transformation, there remains a paucity of understanding concerning how disturbances to biocrusts impact the diversity and spatial distribution patterns among ammonia oxidizer communities within temperate deserts. This investigation delved into assessing how 4 years’ worth of removing biocrust influenced niche differentiation between nitrifying archaea and bacteria while also examining its effects on shaping community structures of predominant ammonia-oxidizing archaea (AOA) within the Gurbantunggut Desert soils. Despite notable variations in abundance of ammonia-oxidizing microbes across distinct soil depths throughout different seasons, it became apparent that removing biocrust significantly altered both the abundance and niche pattern for AOA alongside their bacterial counterparts during winter and summer periods. Notably dominating over their bacterial counterparts within desert soils, AOA displayed their highest archaeal to bacterial amoA gene copy ratio (6549-fold higher) at a soil depth of 5–10 cm during summer. Moreover, substantial impacts were observed upon AOA diversity along with compositional changes following such perturbation events. The aftermath saw an emergence of more diffuse yet dynamic AOA communities, especially noticeable amidst winter when nitrogen and water limitations were relatively alleviated. In summary, our findings underscore how interactions between biocrust coverages alongside factors like soil temperature, total carbon content, or NO 3 − _N concentrations govern niches occupied by ammoxidation communities whilst influencing assemblage processes too. The sensitivity shown by dominant AOAs towards biocrust removal further underscores how biocrust coverage influences nitrogen transformation processes while potentially involving other communities and functions in desert ecosystems.

Biological soil crusts (biocrusts) are considered “desert ecosystem engineers” because they play a vital role in the restoration and stability maintenance of deserts, including those cold sandy land ecosystems at high latitudes, which are especially understudied. Microorganisms participate in the formation and succession of biocrusts, contributing to soil properties’ improvement and the stability of soil aggregates, and thus vegetation development. Accordingly, understanding the composition and successional characteristics of microorganisms is a prerequisite for analyzing the ecological functions of biocrusts and related applications. Here, the Hulun Buir Sandy Land region in northeastern China—lying at the highest latitude of any sandy land in the country—was selected for study. Through a field investigation and next-generation sequencing (Illumina MiSeq PE300 Platform), our goal was to assess the shifts in diversity and community composition of soil bacteria and fungi across different stages during the succession of biocrusts in this region, and to uncover the main factors involved in shaping their soil microbial community. The results revealed that the nutrient enrichment capacity of biocrusts for available nitrogen, total nitrogen, total phosphorus, total content of water-soluble salt, available potassium, soil organic matter, and available phosphorus was progressively enhanced by the succession of cyanobacterial crusts to lichen crusts and then to moss crusts. In tandem, soil bacterial diversity increased as biocrust succession proceeded but fungal diversity decreased. A total of 32 bacterial phyla and 11 fungal phyla were identified, these also known to occur in other desert ecosystems. Among those taxa, the relative abundance of Proteobacteria and Cyanobacteria significantly increased and decreased, respectively, along the cyanobacterial crust–lichen–moss crust successional gradient. However, for Actinobacteria , Chloroflexi , and Acidobacteria their changed relative abundance was significantly hump-shaped, increasing in the shift from cyanobacterial crust to lichen crust, and then decreasing as lichen crust shifted to moss crust. In this process, the improved soil properties effectively enhanced soil bacterial and fungal community composition. Altogether, these findings broaden our understanding about how soil microbial properties can change during the succession of biocrusts in high-latitude, cold sandy land ecosystems.

Arid ecosystems constitute 41% of land’s surface and play an important role in global carbon cycle. In particular, biological soil crusts (BSC) are known to be a hotspot of carbon fixation as well as mineralization in arid ecosystems. However, little information is available on carbon decomposition and microbes in BSC and key controlling variables for microbial activities in arid ecosystems. The current study, carried out in South Mediterranean arid ecosystem, aimed to evaluate the effects of intact and removed cyanobacteria/lichen crusts on soil properties, soil enzyme activities, and microbial abundances (bacteria and fungi). We compared five different treatments (bare soil, soil with intact cyanobacteria, soil with cyanobacteria removed, soil with intact lichens, and soil with lichens removed) in four different soil layers (0–5, 5–10, 10–15, and 15–20 cm). Regardless of soil treatments, activities of hydrolases and water content increased with increasing soil depth. The presence of lichens increased significantly hydrolase activities, which appeared to be associated with greater organic matter, nitrogen, and water contents. However, phenol oxidase was mainly controlled by pH and oxygen availability. Neither fungal nor bacterial abundance exhibited a significant correlation with enzyme activities suggesting that soil enzyme activities are mainly controlled by edaphic and environmental conditions rather than source microbes. Interestingly, the presence of lichens reduced the abundance of bacteria of which mechanism is still to be investigated.

Soil crusts influence many soil parameters that affect how water moves into and through the soil, and therefore, critically influence water availability, erosion processes, nutrient fluxes, and vegetation distribution patterns in semiarid ecosystems. Soil crusts are quite sensitive to disturbance, and their alteration can lead to modification of the local hydrological regime, thus affecting general functioning of the ecosystem. The aim of this study was to analyze the influence of different types of soil crusts, physical, and biological in different developmental stages, as well as the impact of their disturbance, on infiltration. This was assessed by means of rainfall simulations conducted in two semiarid ecosystems in southeast Spain characterized by different lithologies, topographies, and soil crust distributions. Two consecutive rainfall simulation experiments (50 mm h¯¹ rainfall intensity), the first on dry soil and the second on wet soil, were carried out in microplots (0.25 m²) containing the most representative soil crust types at each site, each crust type subjected to three disturbance treatments: (a) undisturbed, (b) trampling, and (c) removal. Infiltration in the crusts was higher on coarse-than on fine-textured soils and almost two times greater on dry than on wet soil. Biological soil crusts (BSC) showed higher infiltration rates than physical soil crusts (PSC). Within BSC, infiltration increased as cyanobacterial biomass increased and was the highest in moss crusts. However, latesuccessional crustose and squamulose lichen crusts showed very low infiltration rates. Trampling reduced infiltration rates, especially when soil was wet, whereas crust removal enhanced infiltration. But this increase in infiltration after removing the crust decreased over time as the soil sealed again due to raindrop impact, making runoff rates in the scraped microplots approach those registered in the respective undisturbed crust types. Our results demonstrate that water redistribution in semiarid ecosystems strongly depends on the type of crusts that occupy the interplant spaces and the characteristics of the soils which they overly, as well as the antecedent moisture conditions of the soil. Disturbance of these crust patches results in increased runoff and erosion, which has important consequences on general ecosystem functioning.