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Semi‐arid grasslands on the Mongolian Plateau are expected to experience high inputs of anthropogenic reactive nitrogen in this century. It remains unclear, however, how soil organisms and nutrient cycling are directly affected by N enrichment (i.e., without mediation by plant input to soil) vs. indirectly affected via changes in plant‐related inputs to soils resulting from N enrichment. To test the direct and indirect effects of N enrichment on soil organisms (bacteria, fungi and nematodes) and their associated C and N mineralization, in 2010, we designated two subplots (with plants and without plants) in every plot of a six‐level N‐enrichment experiment established in 1999 in a semi‐arid grassland. In 2014, 4 years after subplots with and without plant were established, N enrichment had substantially altered the soil bacterial, fungal and nematode community structures due to declines in biomass or abundance whether plants had been removed or not. N enrichment also reduced the diversity of these groups (except for fungi) and the soil C mineralization rate and induced a hump‐shaped response of soil N mineralization. As expected, plant removal decreased the biomass or abundance of soil organisms and C and N mineralization rates due to declines in soil substrates or food resources. Analyses of plant‐removal‐induced changes (ratios of without‐ to with‐plant subplots) showed that micro‐organisms and C and N mineralization rates were not enhanced as N enrichment increased but that nematodes were enhanced as N enrichment increased, indicating that the effects of plant removal on soil organisms and mineralization depended on trophic level and nutrient status. Surprisingly, there was no statistical interaction between N enrichment and plant removal for most variables, indicating that plant‐related inputs did not qualitatively change the effects of N enrichment on soil organisms or mineralization. Structural equation modelling confirmed that changes in soil communities and mineralization rates were more affected by the direct effects of N enrichment (via soil acidification and increased N availability) than by plant‐related indirect effects. Our results provide insight into how future changes in N deposition and vegetation may modify below‐ground communities and processes in grassland ecosystems. A plain language summary is available for this article. Plain Language Summary

1. Mountain grasslands have recently been exposed to substantial changes in land use and climate and in the near future will likely face an increased frequency of extreme droughts. To date, how the drought responses of carbon (C) allocation, a key process in the cycle, are affected by land-use changes in mountain grassland is not known. 2. We performed an experimental summer drought on an abandoned grassland and a traditionally managed hay meadow and traced the fate of recent assimilates through the plant-soil continuum. We applied two ¹³CO₂ pulses, at peak drought and in the recovery phase shortly after rewetting. 3. Drought decreased total C uptake in both grassland types and led to a loss of above-ground carbohydrate storage pools. The below-ground C allocation to root sucrose was enhanced by brought, eapecially in the meadow, which also held larger root carbohydrate storage pools. 4. The microbial community of the abandoned grassland comprised more saprotrophic fungal and Gram(+) bacterial markers compared to the meadow. Drought increased the newly introduced AM and saprotrophic (A+S) fungi:bacteria ratio in both grassland types. At peak drought,¹³C transfer into AM and saprotrophic fungi, and Gram(-) bacteria was more strongly reduced in the meadow than in the abandoned grassland, which contrasted the patterns of the root carbohydrate pools. 5. In both grassland types, the C allocatioin largely recovered after rewetting. Slowest recovery was found for AM fungi and their ¹³C uptake. In contrast, all bacterial markers quickly recovered C uptake. In the meadow, where plant nitrate uptake was enhanced after drought, C uptake was even higher than in control plots. 6. Synthesis. Our results suggest that resistance and resilience (i.e. recovery) of plant C dynamics and plant-microbial interactions are negatively related, that is, high resistance is followed by slow recovery and vice versa. The abandoned grassland was more resistant to drought than the meadow and possibly had a stronger link to AM fungi that could have provided better access to water through the hyphal network. In contrast, meadow communities strongly reduced C allocation to storage and C transfer to microbial community in the brought phase, but in the recovery phase invested C resources in the bacterial communities to gain more nutrients for regrowth. We conclude that the management of mountain grasslands increases their resilience to drought.

Terrestrial ecosystems worldwide are receiving increasing amounts of biologically reactive nitrogen (N) as a consequence of anthropogenic activities. This intended or unintended fertilization can have a wide‐range of impacts on biotic communities and hence on soil respiration. Reduction in below‐ground carbon (C) allocation induced by high N availability has been assumed to be a major mechanism determining the effects of N enrichment on soil respiration. In addition to increasing available N, however, N enrichment causes soil acidification, which may also affect root and microbial activities. The relative importance of increased N availability vs. soil acidification on soil respiration in natural ecosystems experiencing N enrichment is unclear. We conducted a 12‐year N enrichment experiment and a 4‐year complementary acid addition experiment in a semi‐arid Inner Mongolian grassland. We found that N enrichment had contrasting effects on root and microbial respiration. N enrichment significantly increased root biomass, root N content and specific root respiration, thereby promoting root respiration. In contrast, N enrichment significantly suppressed microbial respiration likely by reducing total microbial biomass and changing the microbial community composition. The effect on root activities was due to both soil acidity and increased available N, while the effect on microbes primarily stemmed from soil acidity, which was further confirmed by results from the acid addition experiment. Our results indicate that soil acidification exerts a greater control than soil N availability on soil respiration in grasslands experiencing long‐term N enrichment. These findings suggest that N‐induced soil acidification should be included in predicting terrestrial ecosystem C balance under future N deposition scenarios.

1. Drought periods are projected to become more severe and more frequent in many European regions. While effects of single strong droughts on plant and microbial carbon (C) dynamics have been studied in some detail, impacts of recurrent drought events are still little understood. 2. We tested whether the legacy of extreme experimental drought affects responses of plant and microbial C and nitrogen (N) turnover to further drought and rewetting. In a mountain grassland, we conducted a l3C pulse-chase experiment during a naturally occurring drought and rewetting event in plots previously exposed to experimental droughts and in ambient controls (AC). After labelling, we traced 13C below-ground allocation and incorporation into soil microbes using phospholipid fatty acid biomarkers. 3. Drought history (DH) had no effects on the standing shoot and fine root plant biomass. However, plants with experimental DH displayed decreased shoot N concentrations and increased fine root N concentrations relative to those in AC. During the natural drought, plants with DH assimilated and allocated less 13C below-ground; moreover, fine root respiration was reduced and not fuelled by fresh C compared to plants in AC. 4. Regardless of DH, microbial biomass remained stable during natural drought and rewetting. Although microbial communities initially differed in their composition between soils with and without DH, they responded to the natural drought and rewetting in a similar way: gram-positive bacteria increased, while fungal and gram-negative bacteria remained stable. In soils with DH, a strongly reduced uptake of recent plant-derived 13C in microbial biomarkers was observed during the natural drought, pointing to a smaller fraction of active microbes or to a microbial community that is less dependent on plant C. 5. Synthesis. Drought history can induce changes in abovevs. below-ground plant N concentrations and affect the response of plant C turnover to further droughts and rewetting by decreasing plant C uptake and below-ground allocation. DH does not affect the responses of the microbial community to further droughts and rewetting, but alters microbial functioning, particularly the turnover of recent plant-derived carbon, during and after further drought periods.

We compare the nutrient-dependent photosynthetic efficiencies of the chlorophyte, Dunaliella tertiolecta, with those of the marine diatom, Thalassiosira weissflogii. Despite considerable evolutionary and physiological differences, these two species appear to use nearly identical growth strategies under a wide range of nutrient limitation. Using a variety of physiological measurements, we find that, for both species and across all growth rates, 75% of the gross photosynthetic electron flow is invested in carbon fixation and only 30% is retained as net carbon accumulation. A majority of gross photosynthesis (70%) is ultimately used as reductant for biosynthetic pathways and for the generation of ATP. In both species, newly formed carbon products exhibit much shorter half-lives at slow growth rates than at fast growth rates. We show that this growth rate dependence is a result of increased polysaccharide storage during the S phase of the cell cycle. We present a model of carbon utilization that incorporates this growth rate-dependent carbon allocation and accurately captures (r 2 = 0.94) the observed time-resolved carbon retention. Together, our findings suggest a common photosynthetic optimization strategy in evolutionarily distinct phytoplankton species and contribute towards a systems-level understanding of carbon flow in photoautotrophs.

This paper reviews the role of soil respiration in determining ecosystem carbon balance, and the conceptual basis for measuring and modeling soil respiration. We developed it to provide background and context for this special issue on soil respiration and to synthesize the presentations and discussions at the workshop. Soil respiration is the largest component of ecosystem respiration. Because autotrophic and heterotrophic activity belowground is controlled by substrate availability, soil respiration is strongly linked to plant metabolism, photosynthesis and litterfall. This link dominates both base rates and short-term fluctuations in soil respiration and suggests many roles for soil respiration as an indicator of ecosystem metabolism. However, the strong links between above and belowground processes complicate using soil respiration to understand changes in ecosystem carbon storage. Root and associated mycorrhizal respiration produce roughly half of soil respiration, with much of the remainder derived from decomposition of recently produced root and leaf litter. Changes in the carbon stored in the soil generally contribute little to soil respiration, but these changes, together with shifts in plant carbon allocation, determine ecosystem carbon storage belowground and its exchange with the atmosphere. Identifying the small signal from changes in large, slow carbon pools in flux dominated by decomposition of recent material and autotrophic and mycorrhizal respiration is a significant challenge. A mechanistic understanding of the belowground carbon cycle and of the response of different components to the environment will aid in identifying this signal. Our workshop identified information needs to help build that understanding: (1) the mechanisms that control the coupling of canopy and belowground processes; (2) the responses of root and heterotrophic respiration to environment; (3) plant carbon allocation patterns, particularly in different forest developmental stages, and in response to treatments (warming, CO₂, nitrogen additions); and (4) coupling measurements of soil respiration with aboveground processes and changes in soil carbon. Multi-factor experiments need to be sufficiently long to allow the systems to adjust to the treatments. New technologies will be necessary to reduce uncertainty in estimates of carbon allocation, soil carbon pool sizes, and different responses of roots and microbes to environmental conditions.

Photosynthetically derived carbon (C) is allocated belowground, allowing plants to obtain nutrients. However, less is known about the amount of nutrients acquired relative to the C allocated belowground, which is referred to as C efficiency for nutrient acquisition (CENA). Here, we examined how C efficiency for nitrogen (N) and phosphorus (P) acquisition varied between ryegrass ( Lolium perenne ) and clover ( Trifolium repens ) with and without P fertilization. A continuous 13 C-labeling method was applied to track belowground C allocation. Both species allocated nearly half of belowground C to rhizosphere respiration (49%), followed by root biomass (37%), and rhizodeposition (14%). With regard to N and P, CENA was higher for clover than for ryegrass, which remained higher after accounting for relatively low C costs associated with biological N 2 fixation. Phosphorus fertilization increased the C efficiency for P acquisition but decreased the C efficiency for N acquisition. A higher CENA for N and P in clover may be attributed to the greater rhizosphere priming on soil organic matter decomposition. Increased P availability with P fertilization could induce lower C allocation for P uptake but exacerbate soil N limitation, thereby making N uptake less C efficient. Overall, our study revealed that species-specific belowground C allocation and nutrient uptake efficiency depend on which nutrient is limited.

Studies of plant resource‐use strategies along environmental gradients often assume that dry matter partitioning represents an individual's energy investment in foraging for above‐ versus below‐ground resources. However, ecosystem‐level studies of total below‐ground carbon allocation (TBCA) in forests do not support the equivalency of energy (carbon) and dry matter partitioning, in part because allocation of carbon to below‐ground pools and fluxes that are not accounted for by root biomass (e.g., mycorrhizal hyphae, rhizodeposition; root and soil respiration) can be substantial. Here, we apply this reasoning to individual plants in controlled environments and ask whether dry matter partitioning below‐ground (root mass fraction, RMF) accurately reflects TBCA in studies of optimal partitioning theory. We quantified the relationship between RMF and TBCA in individual plants, using 311 observations from 51 studies that simultaneously measured both allocation variables. Our analysis included tests of whether the RMF‐TBCA relationship depended on mutualist soil microbes, plant growth form, age and study methodology including isotopic pulse–chase duration. We found that RMF was a poor proxy for below‐ground energy investment. This disconnect of RMF and TBCA was driven in part by plants of low RMF (<0.4) exhibiting significantly higher rates of root and soil respiration per unit root mass than plants of high RMF. Root colonization by mutualist microbes, including arbuscular mycorrhizal fungi and nitrogen‐fixing bacteria, increased TBCA by 5%–7%, and TBCA was lower in grasses than other species by 9%–16%. These patterns were evident for relationships assessed both within and between species. We conclude that optimal partitioning studies of plants along environmental gradients are likely to underestimate plant energy allocation below‐ground if the C costs of root and soil respiration are ignored, especially under conditions favouring low RMF. Because energy rather than biomass better reflects how assimilated C supports fitness, this omission of respired C suggests existing studies misrepresent the significance of below‐ground processes to plant function. A free Plain Language Summary can be found within the Supporting Information of this article. A free Plain Language Summary can be found within the Supporting Information of this article.

Mangrove forests cover large areas of tropical and subtropical coastlines. They provide a wide range of ecosystem services that includes carbon storage in above- and below ground biomass and in soils. Carbon dioxide (CO₂) emissions from soil, or soil respiration is important in the global carbon budget and is sensitive to increasing global temperature. To understand the magnitude of mangrove soil respiration and the influence of forest structure and temperature on the variation in mangrove soil respiration I assessed soil respiration at eleven mangrove sites, ranging from latitude 27°N to 37°S. Mangrove soil respiration was similar to those observed for terrestrial forest soils. Soil respiration was correlated with leaf area index (LAI) and aboveground net primary production (litterfall), which should aid scaling up to regional and global estimates of soil respiration. Using a carbon balance model, total belowground carbon allocation (TBCA) per unit litterfall was similar in tall mangrove forests as observed in terrestrial forests, but in scrub mangrove forests TBCA per unit litter fall was greater than in terrestrial forests, suggesting mangroves allocate a large proportion of their fixed carbon below ground under unfavorable environmental conditions. The response of soil respiration to soil temperature was not a linear function of temperature. At temperatures below 26°C Q10 of mangrove soil respiration was 2.6, similar to that reported for terrestrial forest soils. However in scrub forests soil respiration declined with increasing soil temperature, largely because of reduced canopy cover and enhanced activity of photosynthetic benthic microbial communities.

$\\bullet$ Although arbuscular mycorrhizal (AM) fungi are a major pathway in the global carbon cycle, their basic biology and, in particular, their respiratory response to temperature remain obscure. $\\bullet$ A pulse label of the stable isotope 13C was applied to Plantago lanceolata, either uninoculated or inoculated with the AM fungus Glomus mosseae. The extra-radical mycelium (ERM) of the fungus was allowed to grow into a separate hyphal compartment excluding roots. We determined the carbon costs of the ERM and tested for a direct temperature effect on its respiration by measuring total carbon and the $^{13}C:^{12}C$ ratio of respired CO2. With a second pulse we tested for acclimation of ERM respiration after 2 wk of soil warming. $\\bullet$ Root colonization remained unchanged between the two pulses but warming the hyphal compartment increased ERM length. δ13C signals peaked within the first 10 h and were higher in mycorrhizal treatments. The concentration of CO2 in the gas samples fluctuated diurnally and was highest in the mycorrhizal treatments but was unaffected by temperature. Heating increased ERM respiration only after the first pulse and reduced specific ERM respiration rates after the second pulse; however, both pulses strongly depended on radiation flux. $\\bullet$ The results indicate a fast ERM acclimation to temperature, and that light is the key factor controlling carbon allocation to the fungus.