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Host identity is a dominant driver of mycorrhizal fungal community composition during ecosystem development
by
Richardson, Sarah J
,
Martínez‐García, Laura B
,
Peltzer, Duane A
in
arbuscular mycorrhizal fungal succession
,
Arbuscular mycorrhizas
,
Biodiversity
2015
Little is known about the response of arbuscular mycorrhizal fungal communities to ecosystem development. We use a long‐term soil chronosequence that includes ecosystem progression and retrogression to quantify the importance of host plant identity as a factor driving fungal community composition during ecosystem development. We identified arbuscular mycorrhizal fungi and plant species from 50 individual roots from each of 10 sites spanning 5–120 000 yr of ecosystem age using terminal restriction fragment length polymorphism (T‐RFLP), Sanger sequencing and pyrosequencing. Arbuscular mycorrhizal fungal communities were highly structured by ecosystem age. There was strong niche differentiation, with different groups of operational taxonomic units (OTUs) being characteristic of early succession, ecosystem progression and ecosystem retrogression. Fungal alpha diversity decreased with ecosystem age, whereas beta diversity was high at early stages and lower in subsequent stages. A total of 39% of the variance in fungal communities was explained by host plant and site age, 29% of which was attributed to host and the interaction between host and site (24% and 5%, respectively). The strong response of arbuscular mycorrhizal fungi to ecosystem development appears to be largely driven by plant host identity, supporting the concept that plant and fungal communities are tightly coupled rather than independently responding to habitat.
Journal Article
High-severity wildfire leads to multi-decadal impacts on soil biogeochemistry in mixed-conifer forests
by
Hart, Stephen C.
,
Bohlman, Gabrielle N.
,
Dove, Nicholas C.
in
Biogeochemistry
,
Biological activity
,
chronosequence
2020
During the past century, systematic wildfire suppression has decreased fire frequency and increased fire severity in the western United States of America. While this has resulted in large ecological changes aboveground such as altered tree species composition and increased forest density, little is known about the long-term, belowground implications of altered, ecologically novel, fire regimes, especially on soil biological processes. To better understand the long-term implications of ecologically novel, high-severity fire, we used a 44-yr highseverity fire chronosequence in the Sierra Nevada where forests were historically adapted to frequent, low-severity fire, but were fire suppressed for at least 70 yr. High-severity fire in the Sierra Nevada resulted in a long-term (44 +yr) decrease (>50%, P < 0.05) in soil extracellular enzyme activities, basal microbial respiration (56–72%, P < 0.05), and organic carbon (>50%, P < 0.05) in the upper 5 cm compared to sites that had not been burned for at least 115 yr. However, nitrogen (N) processes were only affected in the most recent fire site (4 yr post-fire). Net nitrification increased by over 600% in the most recent fire site (P < 0.001), but returned to similar levels as the unburned control in the 13-yr site. Contrary to previous studies, we did not find a consistent effect of plant cover type on soil biogeochemical processes in mid-successional (10–50 yr) forest soils. Rather, the 44-yr reduction in soil organic carbon (C) quantity correlated positively with dampened C cycling processes. Our results show the drastic and long-term implication of ecologically novel, high-severity fire on soil biogeochemistry and underscore the need for long-term fire ecological experiments.
Journal Article
Steeper declines in forest photosynthesis than respiration explain age-driven decreases in forest growth
2014
The traditional view of forest dynamics originated by Kira and Shidei [Kira T, Shidei T (1967) Jap J Ecol 17:70–87] and Odum [Odum EP (1969) Science 164(3877):262–270] suggests a decline in net primary productivity (NPP) in aging forests due to stabilized gross primary productivity (GPP) and continuously increased autotrophic respiration (R ₐ). The validity of these trends in GPP and R ₐ is, however, very difficult to test because of the lack of long-term ecosystem-scale field observations of both GPP and R ₐ. Ryan and colleagues [Ryan MG, Binkley D, Fownes JH (1997) Ad Ecol Res 27:213–262] have proposed an alternative hypothesis drawn from site-specific results that aboveground respiration and belowground allocation decreased in aging forests. Here, we analyzed data from a recently assembled global database of carbon fluxes and show that the classical view of the mechanisms underlying the age-driven decline in forest NPP is incorrect and thus support Ryan’s alternative hypothesis. Our results substantiate the age-driven decline in NPP, but in contrast to the traditional view, both GPP and R ₐ decline in aging boreal and temperate forests. We find that the decline in NPP in aging forests is primarily driven by GPP, which decreases more rapidly with increasing age than R ₐ does, but the ratio of NPP/GPP remains approximately constant within a biome. Our analytical models describing forest succession suggest that dynamic forest ecosystem models that follow the traditional paradigm need to be revisited.
Journal Article
Distinct fungal successional trajectories following wildfire between soil horizons in a cold-temperate forest
2020
• Soil fungi represent a major component of below-ground biodiversity that determines the succession and recovery of forests after disturbance. However, their successional trajectories and driving mechanisms following wildfire remain unclear.
• We examined fungal biomass, richness, composition and enzymes across three soil horizons (Oe, A1 and A2) along a near-complete fire chronosequence (1, 2, 8, 14, 30, 49 and c. 260 yr) in cold-temperate forests of the Great Khingan Mountains, China. The importance of soil properties, spatial distance and tree composition were also tested.
• Ectomycorrhizal fungal richness and β-glucosidase activity were strongly reduced by burning and significantly increased with ‘time since fire’ in the Oe horizon but not in the mineral horizons. Time since fire and soil C : N ratio were the primary drivers of fungal composition in the Oe and A1/A2 horizons, respectively. Ectomycorrhizal fungal composition was remarkably sensitive to fire history in the Oe horizon, while saprotroph community was strongly affected by time since fire in the deeper soil horizon and this effect emerged 18 years after fire in the A2 horizon.
• Our study demonstrates pronounced horizon-dependent successional trajectories following wildfire and indicates interactive effects of time since fire, soil stoichiometry and spatial distance in the reassembly of below-ground fungal communities in a cold and fire-prone region.
Journal Article
Deciphering factors driving soil microbial life‐history strategies in restored grasslands
2023
In macroecology, the concept of r‐ and K‐strategy has been widely applied, yet, there have been limited studies on microbial life‐history strategies in temperate grasslands using multiple sequencing approaches. Total phospholipid fatty acid (PLFA) analysis, high‐throughput meta‐genomic sequencing, and GeoChip technologies were used to examine the changes in microbial life‐history traits in a chronosequence of restored grasslands (1, 5, 10, 15, 25, and 30 years since restoration). Grassland restoration increased the relative abundances of Actinobacteria, Proteobacteria, and Bacteroidetes but reduced the relative abundances of Acidobacteria, Planctomycetes, and Chloroflexi. PLFA analysis revealed that grassland restoration reduced the fungi:bacteria and Gram‐positive:Gram‐negative bacteria ratios. Combined with the meta‐genomic data, we found that grassland restoration shifted microorganisms from oligotrophic (K‐) to copiotrophic (r‐) groups, consistent with the increased rRNA operon copy number of the microbial community. Structural equation modeling showed that soil properties positively (p < 0.05) while plant properties negatively (p < 0.05) affected microbial life‐history traits. We built a framework to highlight the importance of plant and soil properties in driving microbial life‐history traits during grassland restoration. Finally, by incorporating meta‐genomic and other microbiological data, this study showed that microbial life‐history traits support the idea that rRNA operon copy number is a trait that reflects resource availability to soil microorganisms. We concluded that the macroecological theory could be applied to soil microbial life‐history traits and also highlight the key effects of plant and soil properties on the changes in microbial strategies. These findings were suitable for this Journal (significantly advance the field of Microbial Ecology) and first proved that macroecological theory could be applied to soil microbial community, which was benefit to the development of microbial ecology and can be regarded as the evidence for most of researches. Highlights Grassland restoration increased and decreased abundances of r‐ and K‐strategists, respectively. Grassland restoration shifted soil microorganisms from oligotrophic to copiotrophic. Soil properties positively affected microbial life‐history traits. Plant properties negatively affected microbial life‐history traits.
Journal Article
Greater root phosphatase activity in nitrogen-fixing rhizobial but not actinorhizal plants with declining phosphorus availability
by
Lambers, Hans
,
Albornoz, Felipe E.
,
Turner, Benjamin L.
in
Abundance
,
Allocasuarina
,
Availability
2017
1. The abundance of nitrogen (N)-fixing plants in ecosystems where phosphorus (P) limits plant productivity poses a paradox because N fixation entails a high P cost. One explanation for this paradox is that the N-fixing strategy allows greater root phosphatase activity to enhance acquisition from organic sources, but evidence to support this contention is limited. 2. We measured root phosphomonoesterase (PME) activity of 10 N-fixing species, including rhizobial legumes and actinorhizal Allocasuarina species, and eight non-N-fixing species across a retrogressive soil chronosequence showing a clear shift from N to P limitation of plant growth and representing a strong natural gradient in P availability. 3. Legumes showed greater root PME activity than non-legumes, with the difference between these two groups increasing markedly as soil P availability declined. By contrast, root PME activity of actinorhizal species was always lower than that of co-occurring legumes and not different from non-N-fixing plants. 4. The difference in root PME activity between legumes and actinorhizal plants was not reflected in a greater or similar reliance on N fixation for N acquisition by actinorhizal species compared to cooccurring legumes. 5. Synthesis. Our results support the idea that N-fixing legumes show high root phosphatase activity, especially at low soil P availability, but suggest that this is a phylogenetically conserved trait rather than one directly linked to their N-fixation capacity.
Journal Article
Carbon demand drives microbial mineralization of organic phosphorus during the early stage of soil development
2016
Despite that organic phosphorus (Po) is a source of bioavailable P during the early stage of soil development, it remains unclear whether P availability or organic carbon (C) mineralization is the main regulator of Po mineralization. In this study, the P availability (labile inorganic P, Pi) and the potential organic C mineralization (β-glucosidase activity) were investigated at the Hailuogou Chronosequence and a reference site (35–125 and ∼1400 years after glacier retreat, respectively) to decipher their relationships with the potential Po mineralization (acid and alkaline phosphomonoesterase activities). Labile Pi displayed no trend in the soil profile, whereas it was significantly higher at the reference site than the young sites. Enzyme activities decreased down the soil profile, but this trend weakened for specific activities (enzyme activity per microbial biomass C). Enzyme activities and specific activities displayed no trend with the succession stage. Potential Po mineralization was more related to potential organic C mineralization (
R
2
= 0.41–0.69,
p
< 0.0001) than P availability (
R
2
= 0.05–0.09,
p
≤ 0.05). By increasing the specific activity of β-glucosidase, the microbial biomass C:P ratio decreased to reach the value of 8:1. Probably, the phosphate in the excess of microbial demand was released as the by-product of C mineralization. At the young sites of the chronosequence, the significant correlation between Po and C concentrations in the surface mineral horizon (
R
2
= 0.85,
p
< 0.0001) suggested that the mineralizations of Po and organic C were linked to each other. The results suggested that the demand for C may drive the microbial mineralization of soil Po during the early stage of soil development, and the phosphate released by the Po mineralization may serve as a potential source of labile Pi for plants.
Journal Article
Distinct co-occurrence patterns and driving forces of rare and abundant bacterial subcommunities following a glacial retreat in the eastern Tibetan Plateau
2019
Unraveling the dynamics and driving forces of abundant and rare bacteria in response to glacial retreat is essential for a deep understanding of their ecological and evolutionary processes. Here, we used Illumina sequencing datasets to investigate ecological abundance, successional dynamics, and the co-occurrence patterns of abundant and rare bacteria associated with different stages of soil development in the Hailuogou Glacier Chronosequence. Abundant taxa exhibited ubiquitous distribution and tight clustering, while rare taxa showed uneven distribution and loose clustering along the successional stages. Both abundant and rare subcommunities were driven by different factors during assembly: the interactions of biotic and edaphic factors were the main driving forces, although less important for rare taxa than for the abundant ones. In particular, the redundancy analysis and structural equation modeling showed that soil organic C, pH, and plant richness primarily affected abundant subcommunities, while soil N and pH were most influential for rare subcommunities. More importantly, variation partitioning showed that edaphic factors exhibited a slightly greater influence on both abundant (7.8%) and rare (4.5%) subcommunities compared to biotic factors. Both abundant and rare bacteria exhibited a more compact network topology at the middle than at the other chronosequence stages. The overlapping nodes mainly belonged to Proteobacteria and Acidobacteria in abundant taxa and Planctomycetia, Sphingobacteriia, and Phycisphaerae in rare taxa. In addition, the network analysis showed that the abundant taxa exhibited closer relationships and more influence on other co-occurrences in the community when compared to rare taxa. These findings collectively reveal divergent co-occurrence patterns and driving forces for abundant and rare subcommunities along a glacier forefield chronosequence in the eastern Tibetan Plateau.
Journal Article
Rapid peat development beneath created, maturing mangrove forests
2020
Mangrove forests are among the world’s most productive and carbon-rich ecosystems. Despite growing understanding of factors controlling mangrove forest soil carbon stocks, there is a need to advance understanding of the speed of peat development beneath maturing mangrove forests, especially in created and restored mangrove forests that are intended to compensate for ecosystem functions lost during mangrove forest conversion to other land uses. To better quantify the rate of soil organic matter development beneath created, maturing mangrove forests, we measured ecosystem changes across a 25-yr chronosequence.We compared ecosystem properties in created, maturing mangrove forests to adjacent natural mangrove forests.We also quantified site-specific changes that occurred between 2010 and 2016. Soil organic matter accumulated rapidly beneath maturing mangrove forests as sandy soils transitioned to organic-rich soils (peat). Within 25 yr, a 20-cm deep peat layer developed. The time required for created mangrove forests to reach equivalency with natural mangrove forests was estimated as (1) <15 yr for herbaceous and juvenile vegetation, (2) ~55 yr for adult trees, (3) ~25 yr for the upper soil layer (0–10 cm), and (4) ~45–80 yr for the lower soil layer (10–30 cm). For soil elevation change, the created mangrove forests were equivalent to or surpassed natural mangrove forests within the first 5 yr. A comparison to chronosequence studies from other ecosystems indicates that the rate of soil organic matter accumulation beneath maturing mangrove forests may be among the fastest globally. In most peatland ecosystems, soil organic matter formation occurs slowly (over centuries, millennia); however, these results show that mangrove peat formation can occur within decades. Peat development, primarily due to subsurface root accumulation, enables mangrove forests to sequester carbon, adjust their elevation relative to sea level, and adapt to changing conditions at the dynamic land–ocean interface. In the face of climate change and rising sea levels, coastal managers are increasingly concerned with the longevity and functionality of coastal restoration efforts. Our results advance understanding of the pace of ecosystem development in created, maturing mangrove forests, which can improve predictions of mangrove forest responses to global change and ecosystem restoration.
Journal Article
Soil microbial biomass and the fate of phosphorus during long-term ecosystem development
by
Lambers, Hans
,
Smith, Sally E.
,
Condron, Leo M.
in
Agricultural soils
,
Biogeochemistry
,
Biomass
2013
Background Soil phosphorus availability declines during long-term ecosystem development on stable land surfaces due to a gradual loss of phosphorus in runoff and transformation of primary mineral phosphate into secondary minerals and organic compounds. These changes have been linked to a reduction in plant biomass as ecosystems age, but the implications for belowground organisms remain unknown. Methods We constructed a phosphorus budget for the well-studied 120,000 year temperate rainforest chronosequence at Franz Josef, New Zealand. The budget included the amounts of phosphorus in plant biomass, soil microbial biomass, and other soil pools. Results Soil microbes contained 68-78 % of the total biomass phosphorus (i.e. plant plus microbial) for the majority of the 120,000 year chronosequence. In contrast, plant phosphorus was a relatively small pool that occurred predominantly in wood. This points to the central role of the microbial biomass in determining phosphorus availability as ecosystems mature, yet also indicates the likelihood of strong competition between plants and saprotrophic microbes for soil phosphorus. Conclusions This novel perspective on terrestrial biogeochemistry challenges our understanding of phosphorus cycling by identifying soil microbes as the major biological phosphorus pool during long-term ecosystem development.
Journal Article