Catalogue Search | MBRL
Search Results Heading
Explore the vast range of titles available.
MBRLSearchResults
-
DisciplineDiscipline
-
Is Peer ReviewedIs Peer Reviewed
-
Item TypeItem Type
-
SubjectSubject
-
YearFrom:-To:
-
More FiltersMore FiltersSourceLanguage
Done
Filters
Reset
3,954
result(s) for
"depolymerization"
Sort by:
Current Technologies in Depolymerization Process and the Road Ahead
by
von Jouanne, Annette
,
Miao, Yu
,
Yokochi, Alexandre
in
Biodegradation
,
Consumption
,
Depolymerization
2021
Although plastic is considered an indispensable commodity, plastic pollution is a major concern around the world due to its rapid accumulation rate, complexity, and lack of management. Some political policies, such as the Chinese import ban on plastic waste, force us to think about a long-term solution to eliminate plastic wastes. Converting waste plastics into liquid and gaseous fuels is considered a promising technique to eliminate the harm to the environment and decrease the dependence on fossil fuels, and recycling waste plastic by converting it into monomers is another effective solution to the plastic pollution problem. This paper presents the critical situation of plastic pollution, various methods of plastic depolymerization based on different kinds of polymers defined in the Society of the Plastics Industry (SPI) Resin Identification Coding System, and the opportunities and challenges in the future.
Journal Article
Enzyme discovery and engineering for sustainable plastic recycling
2022
The drastically increasing amount of plastic waste is causing an environmental crisis that requires innovative technologies for recycling post-consumer plastics to achieve waste valorization while meeting environmental quality goals. Biocatalytic depolymerization mediated by enzymes has emerged as an efficient and sustainable alternative for plastic treatment and recycling. A variety of plastic-degrading enzymes have been discovered from microbial sources. Meanwhile, protein engineering has been exploited to modify and optimize plastic-degrading enzymes. This review highlights the recent trends and up-to-date advances in mining novel plastic-degrading enzymes through state-of-the-art omics-based techniques and improving the enzyme catalytic efficiency and stability via various protein engineering strategies. Future research prospects and challenges are also discussed.
Biocatalytic depolymerization mediated by enzymes has emerged as an efficient and sustainable alternative for plastic treatment and recycling, which aims to reduce adverse environmental effects and recover valuable components from plastic waste.Metagenomic and proteomic approaches can be harnessed as powerful tools in mining enzymes capable of plastic depolymerization from a wide variety of environments and ecosystems.Plastic-degrading enzymes can be optimized by protein engineering for improved performance, including enhancement of enzyme thermostability, reinforcement of the binding of substrate to enzyme active site, enhancement of interaction between substrate and enzyme surface, and refinement of catalytic capacity.
Journal Article
Kinetics of Hydroxyl Growth on Natural Rubber Depolymerization with H2O2/Fenton Using Infrared Spectroscopy
by
Ardianingsih, Retno
,
Sitompul, Hamonangan Rekso Diputro
,
Wibowo, Heri Budi
in
Absorption spectra
,
Depolymerization
,
Fourier transforms
2025
The kinetics of the depolymerization of natural rubber (NR) to hydroxyl-terminated natural rubber (HTNR) by hydrogen peroxide (H2O2) in the presence of a Fenton catalyst within an acidic milieu and under ultraviolet radiation has been rigorously examined utilizing infrared spectroscopy to determine the alterations in molar mass and the functional characteristics. The kinetic model was analyzed in accordance with the elementary reaction, encompassing the following mechanisms: the interaction between hydroxyl radicals and NR, producing radical NR and hydroxylated NR; the reaction wherein radical NR and hydroxyl radicals yield hydroxylated NR; and the subsequent reaction of hydroxylated NR with hydroxyl radicals producing lower radical NR, hydroxylated terminated NR, radical NR, and hydroxylated NR. The conversion of the NR polymer and the total hydroxyl content were discerned at the absorption bands of the CH2-CH2 and OH groups located at 850 cm−1 and 3400 cm−1, respectively. The absorption peak at 1850 cm−1 attributed to CH3 was employed as the reference group for calibration. The influence of the temperature on the depolymerization process conformed to the Arrhenius equation, characterized by activation energies of 750 K and 1200 K. The impact of the H2O2/Fenton ratio on the depolymerization process follows a power law with power coefficients of 1.97 and 1.82.
Journal Article
Hippocampal Nogo66‐NgR1 signaling activation restricts postsynaptic assembly in aged mice with postoperative neurocognitive disorders
2025
Postoperative neurocognitive disorders (pNCD) are a common neurological complication, especially in elderly following anesthesia and surgery. Yet, the underlying mechanisms of pNCD remain elusive. This study aimed to investigate the molecular mechanisms that compromise synaptic metaplasticity in pNCD development with a focus on the involvement of Nogo‐66 receptor 1 (NgR1) in the pathogenesis of pNCD in aged mice. Aged mice subjected to anesthesia and laparotomy surgery exhibited anxiety‐like behavior and contextual fear memory impairment. Moreover, the procedure significantly increased NogoA and NgR1 expressions, particularly in the hippocampal CA1 and CA3 regions. This increase led to the depolymerization of F‐actin, attributed to the activation of the RhoA‐GTPase, resulting in a reduction of dendritic spines and changes in their morphology. Additionally, these changes hindered the efficient postsynaptic delivery of the subunit GluA1 and GluA2 of AMPA receptors (AMPARs), consequently diminishing excitatory neurotransmission in the hippocampus. Importantly, administering the competitive NgR1 antagonist peptide NEP1‐40 (Nogo‐A extracellular peptide residues 1–40 amino acids of Nogo‐66) and Fasudil (a Rho‐kinase inhibitor) effectively mitigated synaptic impairments and reversed neurocognitive deficits in aged mice following anesthesia and surgery. Our work indicates that high hippocampal Nogo66‐NgR1 signaling disrupts postsynaptic AMPA receptor surface delivery due to F‐actin depolymerization in the pathophysiology of pNCD. Hippocampal Nogo66‐NgR1 signaling activation, disrupting postsynaptic AMPA receptor surface delivery due to F‐actin depolymerization, leads to anxiety‐like behavior and contextual fear memory impairment in aged mice following anaesthesia and surgery.
Journal Article
Synthetic Biology towards Engineering Microbial Lignin Biotransformation
by
Yaguchi, Allison L.
,
Blenner, Mark A.
,
Lee, Stephen J.
in
aromatic catabolism
,
Aromatic compounds
,
Binding sites
2021
Lignin is the second most abundant biopolymer on earth and is a major source of aromatic compounds; however, it is vastly underutilized owing to its heterogeneous and recalcitrant nature. Microorganisms have evolved efficient mechanisms that overcome these challenges to depolymerize lignin and funnel complex mixtures of lignin-derived monomers to central metabolites. This review summarizes recent synthetic biology efforts to enhance lignin depolymerization and aromatic catabolism in bacterial and fungal hosts for the production of both natural and novel bioproducts. We also highlight difficulties in engineering complex phenotypes and discuss the outlook for the future of lignin biological valorization.
A sustainable lignocellulosic bioeconomy will not be realized without overcoming hurdles associated with the structural complexity associated with lignin waste streams.Metabolic engineers capitalize on robust, naturally occurring funneling pathways that convert a wide spectrum of substrates to a few key intermediates for ring cleavage and conversion to central metabolites.Expanding the reaction conditions and the range of substrates for lignin depolymerization and funneling enzymes should improve lignin valorization by microorganisms.
Journal Article
Machine learning-aided engineering of hydrolases for PET depolymerization
by
Alexander, Bradley R.
,
Czarnecki, Natalie J.
,
Kim, Wantae
in
631/181/735
,
631/61
,
639/301/923/1028
2022
Plastic waste poses an ecological challenge
1
–
3
and enzymatic degradation offers one, potentially green and scalable, route for polyesters waste recycling
4
. Poly(ethylene terephthalate) (PET) accounts for 12% of global solid waste
5
, and a circular carbon economy for PET is theoretically attainable through rapid enzymatic depolymerization followed by repolymerization or conversion/valorization into other products
6
–
10
. Application of PET hydrolases, however, has been hampered by their lack of robustness to pH and temperature ranges, slow reaction rates and inability to directly use untreated postconsumer plastics
11
. Here, we use a structure-based, machine learning algorithm to engineer a robust and active PET hydrolase. Our mutant and scaffold combination (FAST-PETase: functional, active, stable and tolerant PETase) contains five mutations compared to wild-type PETase (N233K/R224Q/S121E from prediction and D186H/R280A from scaffold) and shows superior PET-hydrolytic activity relative to both wild-type and engineered alternatives
12
between 30 and 50 °C and a range of pH levels. We demonstrate that untreated, postconsumer-PET from 51 different thermoformed products can all be almost completely degraded by FAST-PETase in 1 week. FAST-PETase can also depolymerize untreated, amorphous portions of a commercial water bottle and an entire thermally pretreated water bottle at 50 ºC. Finally, we demonstrate a closed-loop PET recycling process by using FAST-PETase and resynthesizing PET from the recovered monomers. Collectively, our results demonstrate a viable route for enzymatic plastic recycling at the industrial scale.
Untreated, postconsumer-PET from 51 different thermoformed products can all be almost completely degraded by FAST-PETase in 1 week and PET can be resynthesized from the recovered monomers, demonstrating recycling at the industrial scale.
Journal Article
Tunable and functional deep eutectic solvents for lignocellulose valorization
2021
Stabilization of reactive intermediates is an enabling concept in biomass fractionation and depolymerization. Deep eutectic solvents (DES) are intriguing green reaction media for biomass processing; however undesired lignin condensation is a typical drawback for most acid-based DES fractionation processes. Here we describe ternary DES systems composed of choline chloride and oxalic acid, additionally incorporating ethylene glycol (or other diols) that provide the desired ‘stabilization’ function for efficient lignocellulose fractionation, preserving the quality of all lignocellulose constituents. The obtained ethylene-glycol protected lignin displays high β-O-4 content (up to 53 per 100 aromatic units) and can be readily depolymerized to distinct monophenolic products. The cellulose residues, free from condensed lignin particles, deliver up to 95.9 ± 2.12% glucose yield upon enzymatic digestion. The DES can be recovered with high yield and purity and re-used with good efficiency. Notably, we have shown that the reactivity of the β-O-4 linkage in model compounds can be steered towards either cleavage or stabilization, depending on DES composition, demonstrating the advantage of the modular DES composition.
Deep eutectic solvents (DES) are intriguing green reaction media for biomass processing, however, undesired lignin condensation is a typical drawback. Here the authors develop a tunable ternary DES system that allows for stabilization of reactive intermediates for efficient lignocellulose fractionation.
Journal Article
Accessing monomers from lignin through carbon–carbon bond cleavage
by
Ouellette, Erik T.
,
Palumbo, Chad T.
,
Román-Leshkov, Yuriy
in
631/45/603
,
639/638/224
,
639/638/675
2024
Lignin, the heterogeneous aromatic macromolecule found in the cell walls of vascular plants, is an abundant feedstock for the production of biochemicals and biofuels. Many valorization schemes rely on lignin depolymerization, with decades of research focused on accessing monomers through C–O bond cleavage, given the abundance of β–O–4 bonds in lignin and the large number of available C–O bond cleavage strategies. Monomer yields are, however, invariably lower than desired, owing to the presence of recalcitrant C–C bonds whose selective cleavage remains a major challenge in catalysis. In this Review, we highlight lignin C–C cleavage reactions, including those of linkages arising from biosynthesis (β–1, β–5, β–β and 5–5) and industrial processing (5–CH
2
–5 and α–5). We examine multiple approaches to C–C cleavage, including homogeneous and heterogeneous catalysis, photocatalysis and biocatalysis, to identify promising strategies for further research and provide guidelines for definitive measurements of lignin C–C bond cleavage.
To date, monomer yields from lignin are limited to those attainable through C–O bond cleavage. Cleaving C–C bonds often leads to deleterious product degradation and low monomer yields. Herein we review lignin C–C cleavage reports and advocate for a standardized reporting of yields.
Journal Article
Characterization and engineering of a two-enzyme system for plastics depolymerization
by
Graham, Rosie
,
Szostkiewicz, Caralyn J.
,
Rorrer, Nicholas A.
in
BASIC BIOLOGICAL SCIENCES
,
Biochemistry
,
biodegradation
2020
Plastics pollution represents a global environmental crisis. In response, microbes are evolving the capacity to utilize synthetic polymers as carbon and energy sources. Recently, Ideonella sakaiensis was reported to secrete a two-enzyme system to deconstruct polyethylene terephthalate (PET) to its constituent monomers. Specifically, the I. sakaiensis PETase depolymerizes PET, liberating soluble products, including mono(2-hydroxyethyl) terephthalate (MHET), which is cleaved to terephthalic acid and ethylene glycol by MHETase. Here, we report a 1.6 Å resolution MHETase structure, illustrating that the MHETase core domain is similar to PETase, capped by a lid domain. Simulations of the catalytic itinerary predict that MHETase follows the canonical two-step serine hydrolase mechanism. Bioinformatics analysis suggests that MHETase evolved from ferulic acid esterases, and two homologous enzymes are shown to exhibit MHET turnover. Analysis of the two homologous enzymes and the MHETase S131G mutant demonstrates the importance of this residue for accommodation of MHET in the active site. We also demonstrate that the MHETase lid is crucial for hydrolysis of MHET and, furthermore, that MHETase does not turnover mono(2-hydroxyethyl)-furanoate or mono(2-hydroxyethyl)-isophthalate. A highly synergistic relationship between PETase and MHETase was observed for the conversion of amorphous PET film to monomers across all nonzero MHETase concentrations tested. Finally, we compare the performance of MHETase:PETase chimeric proteins of varying linker lengths, which all exhibit improved PET and MHET turnover relative to the free enzymes. Together, these results offer insights into the two-enzyme PET depolymerization system and will inform future efforts in the biological deconstruction and upcycling of mixed plastics.
Journal Article
Intracellular pathways for lignin catabolism in white-rot fungi
by
Wong, Allison R.
,
Eder, Elizabeth K.
,
Katahira, Rui
in
(Ceriporiopsis) subvermispora
,
aromatic compounds
,
BASIC BIOLOGICAL SCIENCES
2021
Lignin is a biopolymer found in plant cell walls that accounts for 30% of the organic carbon in the biosphere. White-rot fungi (WRF) are considered the most efficient organisms at degrading lignin in nature. While lignin depolymerization by WRF has been extensively studied, the possibility that WRF are able to utilize lignin as a carbon source is still a matter of controversy. Here, we employ 13C-isotope labeling, systems biology approaches, and in vitro enzyme assays to demonstrate that two WRF, Trametes versicolor and Gelatoporia subvermispora, funnel carbon from ligninderived aromatic compounds into central carbon metabolism via intracellular catabolic pathways. These results provide insights into global carbon cycling in soil ecosystems and furthermore establish a foundation for employing WRF in simultaneous lignin depolymerization and bioconversion to bioproducts—a key step toward enabling a sustainable bioeconomy.
Journal Article