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We explore a recently demonstrated deterministic photon subtraction scheme, based on single-photon Raman interaction with a Λ-type three-level atom, as a tool for manipulating quantum state of few-photon light pulses. We establish a comprehensive theoretical framework using input–output formalism and quantum regression theorem, enabling calculation of the first order autocorrelation matrices of the output light and identification of the temporal modes present in the generated light via their eigendecomposition. By modeling the entire system as a quantum network consisting multiple virtual cavities and a lambda-type emitter cascaded in two parallel guided modes of opposite propagation directions, we extract the quantum state occupying the modes of interest. For both squeezed vacuum and coherent light input pulses, the Wigner function of the output light after photon subtraction clearly reveals its non-Gaussian character. Furthermore, we propose a measurement-based scheme on the subtracted photon which can lead to conditional generation of quantum states resembling Schrodinger’s kitten state directly from coherent input light with fidelities above 99%. This result is particularly nothworthy, as coherent pulses, unlike the squeezed vacuum inputs commonly used in previous studies, are readily available in most experimental setups.