Explore the vast range of titles available.

Multidrug and toxic compound extrusion (MATE) transporters are ancient proteins conserved among various kingdoms, from prokaryotes to eukaryotes. In plants, MATEs usually form a large family in the genome. Homologous MATE transporters have different subcellular localizations, substrate specificities, and responses to external stimuli for functional differentiations. The substrates of MATEs in plants include polyphenols, alkaloids, phytohormones, and ion chelators. The accumulation of these substrates is often associated with favorable agronomic traits such as seed and fruit colors, the balance between dormancy and germination, taste, and stress adaptability. In crops, wild germplasms and domesticated germplasms usually have contrasting agronomic traits such as seed color, seed taste, and stress tolerance. MATE transporters are involved in the regulations of these traits. In this review, we discuss the uniqueness and significance of there being such a large family of MATEs in plants, their substrate diversity that enables them to be involved in various agronomic traits, and the allelic forms and the expression patterns of MATE that are associated with favorable agronomic traits in domesticated crops. The understanding on the roles of MATEs in regulating favorable agronomic traits in crops will provide hints for the selection of genes for molecular breeding that improve desirable traits.

While the focus of this work is primarily ethnobotanical—the plants used by Mayos—we present the following history in an attempt to clarify the historic and present land tenure in the region in a way that is sympathetic to the Mayos. The fact that most Mayos live today in scattered small villages over a large region and are familiar with a variety of habitats can be attributed to historical forces that impelled or drew them in one direction or another. They defended their traditional lands fiercely, and their history is largely one of a defense against encroachment. The Mayos

Researchers agree that domesticated plants were introduced into southeast Europe from southwest Asia as a part of a Neolithic “package,” which included domesticated animals and artifacts typical of farming communities. It is commonly believed that this package reached inland areas of the Balkans by ∼6200 calibrated (cal.) BC or later. Our analysis of the starch record entrapped in dental calculus of Mesolithic human teeth at the site of Vlasac in the Danube Gorges of the central Balkans provides direct evidence that already by ∼6600 cal. BC, if not earlier, Late Mesolithic foragers of this region consumed domestic cereals, such as Triticum monococcum, Triticum dicoccum, and Hordeum distichon, which were also the main crops found among Early Neolithic communities of southeast Europe. We infer that “exotic” Neolithic domesticated plants were introduced to southern Europe independently almost half a millennium earlier than previously thought, through networks that enabled exchanges between inland Mesolithic foragers and early farming groups found along the Aegean coast of Turkey.

The undomesticated rice relative Oryza longistaminata is a valuable genetic resource for the improvement of the domesticated Asian rice, Oryza sativa . To facilitate the conservation, management, and use of O. longistaminata germplasm, we sought to quantify the population structure and diversity of this species across its geographic range, which includes most of sub-Saharan Africa, and to determine phylogenetic relationships to other AA-genome species of rice present in Africa, including the prevalence of interspecific hybridization between O. longistaminata and O. sativa . Though past plant breeding efforts to introgress genes from O. longistaminata have improved biotic stress resistance, ratooning ability, and yield in O. sativa , progress has been limited by substantial breeding barriers. Nevertheless, despite the strong breeding barriers observed by plant breeders who have attempted this interspecific cross, there have been multiple reports of spontaneous hybrids of O. sativa and O. longistaminata (aka “Obake”) obtained from natural populations in Africa. However, the frequency and extent of such natural introgressions and their effect on the evolution of O. longistaminata had not been previously investigated. We studied 190 O. longistaminata accessions, primarily from the International Rice Research Institute genebank collection, along with 309 O. sativa , 25 Oryza barthii , and 83 Oryza glaberrima control outgroups, and 17 control interspecific O. sativa / O. longistaminata hybrids. We analyzed the materials using 178,651 single-nucleotide polymorphisms (SNPs) and seven plastid microsatellite markers. This study identified three genetic subpopulations of O. longistaminata , which correspond geographically to Northwestern Africa, Pan-Africa, and Southern Africa. We confirmed that O. longistaminata is, perhaps counterintuitively, more closely related to the Asian species, O. sativa , than the African species O. barthii and O. glaberrima . We identified 19 recent spontaneous interspecific hybrid individuals between O. sativa and O. longistaminata in the germplasm sampled. Notably, the recent introgression between O. sativa and O. longistaminata has been bidirectional. Moreover, low levels of O. sativa alleles admixed in many predominantly O. longistaminata accessions suggest that introgression also occurred in the distant past, but only in Southern Africa.

Guava ( Psidium guajava L., Myrtaceae) is a Neotropical fruit that is widely consumed around the world. However, its evolutionary history and domestication process are unknown. Here we examine available ecological, taxonomic, genetic, archeological, and historical evidence about guava. Guava needs full sunlight, warm temperatures, and well-distributed rainfall throughout the year to grow, but tolerates drought. Zoochory and anthropochory are the main forms of dispersal. Guava’s phylogenetic relationships with other species of the genus Psidium are unclear. A group of six species that share several morphological characteristics are tentatively accepted as the Psidium guajava complex. DNA analyses are limited to the characterization of crop genetic diversity within localities and do not account for possible evolutionary and domestication scenarios. A significant amount of archeological information exists, with a greater number and older records in South America than in Mesoamerica, where there are also numerous historical records. From this information, we propose that: (1) the guava ancestor may have originated during the Middle or Late Miocene, and the savannas and semi-deciduous forests of South America formed during the Late Pleistocene would have been the most appropriate ecosystems for its growth, (2) the megafauna were important dispersers for guava, (3) dispersal by humans during the Holocene expanded guava’s geographic range, including to the southwestern Amazonian lowlands, (4) where its domestication may have started, and (5) with the European conquest of the Neotropics, accompanied by their domestic animals, new contact routes between previously remote guava populations were established. These proposals could direct future research on the evolutionary and domestication process of guava.

After a century of research, there is still no widely accepted explanation for the spread of farming in Europe. Top-down explanations stress climate change, population increase, or geographic diffusion, but they distort human action reductionistically. Bottom-up explanations stress the local, meaningful choices involved in becoming a farmer, but they do not account for why the Neolithic transition in Europe was so widespread and generally unidirectional. The real problem is theoretical; we need to consider the transformative effects of human–material culture relationships and to relate humans, things, and environments at multiple scales. This article views the Neolithic as a set of new human-material relationships which were experimented with variably but which had unintended consequences resulting in an increasingly coherent, structured, and narrowly based social world. This interplay of local human action and emergent causation made the Neolithic transition difficult to reverse locally; the Neolithic was easy to get into but hard to get out of. On the continental scale, one consequence of this was its slow, patchy, but steady and ultimately almost complete expansion across Europe. As a metamodel, this accommodates current models of the local origin of farming while linking these to emergent large-scale historical patterns.

Background and AimsThe hypothesis of an ancient introduction, i.e. archaeophyte origin, is one of the most challenging questions in phylogeography. Arundo donax (Poaceae) is currently considered to be one of the worst invasive species globally, but it has also been widely utilzed by man across Eurasia for millennia. Despite a lack of phylogenetic data, recent literature has often speculated on its introduction to the Mediterranean region.MethodsThis study tests the hypothesis of its ancient introduction from Asia to the Mediterranean by using plastid DNA sequencing and morphometric analysis on 127 herbarium specimens collected across sub-tropical Eurasia. In addition, a bioclimatic species distribution model calibrated on 1221 Mediterranean localities was used to identify similar ecological niches in Asia.Key ResultsDespite analysis of several plastid DNA hypervariable sites and the identification of 13 haplotypes, A. donax was represented by a single haplotype from the Mediterranean to the Middle East. This haplotype is shared with invasive samples worldwide, and its nearest phylogenetic relatives are located in the Middle East. Morphometric data characterized this invasive clone by a robust morphotype distinguishable from all other Asian samples. The ecological niche modelling designated the southern Caspian Sea, southern Iran and the Indus Valley as the most suitable regions of origin in Asia for the invasive clone of A. donax.ConclusionsUsing an integrative approach, an ancient dispersion of this robust, polyploid and non-fruiting clone is hypothesized from the Middle East to the west, leading to its invasion throughout the Mediterranean Basin.

This review paper analyses the first steps of the spread of domestic plants into Sicily. Despite being the biggest island of the Mediterranean and its central position, the process of arrival and diffusion of crops in Sicily is still poorly understood. Starting from the limited but significant record from Grotta dell’Uzzo, the plant macrofossil data are presented and discussed with some comparison with the pollen, zooarchaeological and obsidian data. The closest regions to Sicily, from where these domesticates may have come, are discussed. The arrival of domesticated plants in Sicily fits perfectly with the model of dispersal by sea. The introduction of crops was a slow process that covered the whole of the Neolithic period. The intention is to raise interest in this field and to inspire researchers to analyse more plant macro- and micro-remains from prehistoric archaeological contexts in Sicily.

Background Agri-silvicultures (ASC) are biocultural practices procuring either the maintenance of wild diversity in predominantly agricultural spaces or introducing agrobiodiversity into forests. In the Mesoamerican region, ASC contribute to food sovereignty and territorial conservation and provide strategies for dealing with global changes. Previous inventories of ASC identified gaps in information about these systems in the Mexican Arid America region. This article raises the general question: How have human interactions between cultural, wild, and domesticated biodiversity in this territory? The particular questions in this paper are: (i) How have historical processes shaped human interactions between wild and domesticated biodiversity in the region? and (ii) What types of agri-silvicultures have emerged in Mexican Arid America since these relationships? Methods We trace a methodological border where archaeologists have identified the Mesoamerican region to define our study area as Arid America northern of this line in Mexico. We analyzed agriculturalization processes in Arid America through a historical review. Then, we carry out an inventory of Arid America ASC based on academic papers and other documented experiences. We constructed a spatial database and a typology to understand what kinds of agri-silviculture occur in the region. Results We identified several pre-Hispanic agri-silvicultural practices in the region, like hunting, fishing, terraces, gathering, and irrigation systems. The cultivation of native species of maize, beans, and squash even was registered. The Spanish colonization forced the agriculturization in arid northern Mexico, where itinerant hunting-gathering patterns predominated. In the twentieth century, the Green Revolution adopted this area as the principal setting for industrialized agriculture. The industrialized irrigated systems expansion and other political strategies provoked the simplification of productive landscapes. The practices that integrate wild and agricultural diversity systems were marginalized and invisibilized in such a context. Our research group proposes seven types of agri-silvicultural systems (natives agrisilvicultures, the oases agroforestry, Mesquite and Huisache ASC, homegardens and other traditional forms of agroforestry or agri-silvicultures). These agri-silvicultures provide food, medicine, fodder, and other contributions, as income to the families that practice them and protect native and exotic species. Discussion and conclusion The agriculturization of the arid environments initiated during Spanish colonization and the subsequent modernizing projects shaped dominant actors and ideologies in the arid north of Mexico. However, aridity has favored ancestral and agroecological relationships between cultures and biodiversity, emerging and subsisting Arid American agri-silvicultures. These agri-silvicultures deserve to be understood, adopted, and adapted to new contexts. They could be essential alternatives in the context of environmental changes.

High-molecular-weight polycyclic aromatic hydrocarbons (PAHs), such as pyrene, are persistent environmental pollutants that threaten soil health and agricultural productivity due to their resistance to degradation. This study evaluated the efficacy of domesticated bacteria isolated from contaminated farmland soil and activated sludge, used alone and in combination with corn (Zea mays L.), to remove pyrene from soil, enhance plant growth, improve tolerance, and ensure crop safety. Six bacterial strains were isolated: three from polluted farmland soil (WB1, WB2, and WF2) and three from activated sludge (WNB, WNC, and WH2). High-throughput 16S rRNA amplicon sequencing profiled bacterial communities after 30 days of treatment. Analytical tools, including LEfSe, random forest, and ZiPi analyses, identified biomarkers and core bacteria associated with pyrene degradation, assessing their correlations with plant growth, tolerance, and pyrene accumulation in corn straw. Bacteria from activated sludge (WNB, WNC, and WH2) outperformed farmland soil-derived strains and the inoculant strain ETN19, with WH2 and WNC achieving 65.06% and 87.69% pyrene degradation by days 15 and 30, respectively. The corn–bacteria consortium achieved up to 97% degradation. Activated sewage sludge (ASS)-derived bacteria were more effective at degrading pyrene and enhancing microbial activity, while soil-derived bacteria better promoted plant growth and reduced pyrene accumulation in straw. Microbial communities, dominated by Proteobacteria, exhibited high species richness and resilience, contributing to xenobiotic degradation. The corn-domesticated bacteria consortia effectively degraded pyrene, promoted plant growth, and minimized pollutant accumulation in crops. This remediation technology offers a promising strategy for rapid and sustainable bioremediation of agricultural soils contaminated with organic compounds such as PAHs or other complex pollutants, while promoting the development of efficient bacterial communities that enhance crop growth.