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Polyploidy, the possession of more than 2 complete genomes, is a major force in plant evolution known to affect the genetic and genomic constitution and the phenotype of an organism, which will have consequences for its ecology and geography as well as for lineage diversification and speciation. In this review, we discuss phylogenetic patterns in the incidence of polyploidy including possible underlying causes, the role of polyploidy for diversification, the effects of polyploidy on geographical and ecological patterns, and putative underlying mechanisms as well as chromosome evolution and evolution of repetitive DNA following polyploidization. Spurred by technological advances, a lot has been learned about these aspects both in model and increasingly also in nonmodel species. Despite this enormous progress, long-standing questions about polyploidy still cannot be unambiguously answered, due to frequently idiosyncratic outcomes and insufficient integration of different organizational levels (from genes to ecology), but likely this will change in the near future. See also the sister article focusing on animals by Choleva and Janko in this themed issue.

Aim: The incompleteness of information on biodiversity distribution is a major issue for ecology and conservation. Researchers have made many attempts to quantify the amount of biodiversity that still remains unknown. We evaluated whether models that integrate ecogeographical variables with measures of the effectiveness of sampling can be used to estimate biodiversity patterns (species richness) of reptiles in remote areas that have received limited surveys. Location: The Western Palaearctic (Europe, Northern Africa, the Middle East and Central Asia). Methods: We gathered data on the distribution of turtles, amphisbaenians and lizards. We used regression models integrating spatial autocorrelation (spatial eigenvector mapping and Bayesian autoregressive models) to analyse species richness, and identified relationships between species richness, ecogeographical features and large-scale measures of accessibility. Results: The two regression techniques were in agreement. Known species richness was dependent on ecogeographical factors, peaking in areas with high temperature and annual actual evapotraspiration, and intermediate cover of natural vegetation. However, richness declined sharply in the least accessible areas. Our models revealed regions where reptile richness is likely to be higher than currently known, particularly in the biodiversity hotspots in the south of the Arabian Peninsula, the Irano-Anatolian region, and the Central Asian mountains. An independent validation data set, with distribution data collected recently throughout the study region, confirmed that combining accessibility measures with ecogeographical variables allows a good estimate of reptile richness, even in remote areas that have received limited monitoring so far. Some remote regions that support very rich communities are covered very little by protected areas. Main conclusions: Integrating accessibility measures into species distribution models allows biologists to identify areas where current knowledge underestimates the actual richness of reptiles. Our study identifies regions requiring future biodiversity research, proposes a novel approach to biodiversity prediction in poorly studied areas, and identifies potential regions for conservation.

Homo erectus was the first hominin to exhibit extensive range expansion. This extraordinary departure from Africa, especially into more temperate climates of Eurasia, has been variously related to technological, energetic and foraging shifts. The temporal and regional anatomical variation in H. erectus suggests that a high level of developmental plasticity, a key factor in the ability of H. sapiens to occupy a variety of habitats, may also have been present in H. erectus. Developmental plasticity, the ability to modify development in response to environmental conditions, results in differences in size, shape and dimorphism across populations that relate in part to levels of resource sufficiency and extrinsic mortality. These differences predict not only regional variations but also overall smaller adult sizes and lower levels of dimorphism in instances of resource scarcity and high predator load. We consider the metric variation in 35 human and non-human primate ‘populations’ from known environmental contexts and 14 time- and space-restricted paleodemes of H. erectus and other fossil Homo. Human and non-human primates exhibit more similar patterns of variation than expected, with plasticity evident, but in differing patterns by sex across populations. The fossil samples show less evidence of variation than expected, although H. erectus varies more than Neandertals. This article is part of the themed issue ‘Major transitions in human evolution’.

The terrestrially hibernating wood frog (Rana sylvatica) is well-known for its iconic freeze tolerance, an overwintering adaptation that has received considerable investigation over the past 35 years. Virtually, all of this research has concerned frogs indigenous to the temperate regions of its broad range within North America. However, recent investigations have shown that frogs of subarctic populations are extremely cold hardy, being capable of surviving freezing for longer periods and at much lower temperatures as compared to conspecifics from temperate regions. Their exceptional freeze tolerance is partly supported by an enhanced cryoprotectant system that uses very high levels of urea and glucose to limit ice formation, regulate metabolism, and protect macromolecules and cellular structures from freezing/thawing stresses. In the weeks before they begin hibernating, northern frogs undertake radical physiological transitions, such as depletion of fat stores and catabolism of muscle protein, that prime the cryoprotectant system by accruing urea and stockpiling glycogen from which glucose is mobilized during freezing. Concentrations of cryoprotectants ultimately achieved in Alaskan frogs when freezing occurs vary among tissues but generally are higher than those of frogs inhabiting milder climates. This review summarizes the molecular, biochemical, and physiological adaptations permitting this northern phenotype to survive the long and harsh winters of the region.

The semiarid region of Brazil is marked by scarce rainfall and high temperatures. The Caatinga biome, established in this region, has great diversity of plants with economic potential and applications, such as in herbal medicine. Plant representatives include those of the family Lamiaceae, which has 240 genera and 7200 species. The essential oil of the species Medusantha martiusii , popularly known as “alfazemas de caboclo”, has often been found to have biological activities, such as cytotoxic, antimicrobial and insecticidal effects, thus making this species economically important. The objective of this study was to characterize the climatic, geographical and edaphic aspects of sites where M. martiussi naturally occurs in the state of Bahia in order to understand the possible relationships and interactions between the environment and plant growth, development and production of essential oils. Vector files with climate, geomorphology, phytophysiognomy, and soil data were examined and the data were systematized and analyzed. The species occurs in semiarid areas with nutrient-poor, acidic and well-drained soils. The species has broad range of thermal adaptation, occurring from mountainous regions with high relief to low altitudes and in climatic zones characterized by scant and poorly distributed rainfall. The essential oil content showed a quantitative variation across the surveyed sites, with an average of 2.07% by dry weight of leaves and flowers, and a moderate and significant interaction of the essential oil with Fe and Zn concentrations present in the soil were also observed.

Arabidopsis halleri is a pseudometallophyte involved in numerous molecular studies of the adaptation to anthropogenic metal stress. In order to test the representativeness of genetic accessions commonly used in these studies, we investigated the A. halleri population genetic structure in Europe. Microsatellite and nucleotide polymorphisms from the nuclear and chloroplast genomes, respectively, were used to genotype 65 populations scattered over Europe. The large-scale population structure was characterized by a significant phylogeographic signal between two major genetic units. The localization of the phylogeographic break was assumed to result from vicariance between large populations isolated in southern and central Europe, on either side of ice sheets covering the Alps during the Quaternary ice ages. Genetic isolation was shown to be maintained in western Europe by the high summits of the Alps, whereas admixture was detected in the Carpathians. Considering the phylogeographic literature, our results suggest a distinct phylogeographic pattern for European species occurring in both mountain and lowland habitats. Considering the evolution of metal adaptation in A. halleri, it appears that recent adaptations to anthropogenic metal stress that have occurred within either phylogeographic unit should be regarded as independent events that potentially have involved the evolution of a variety of genetic mechanisms.

Brazil hosts a vast biodiversity across, encompassing medicinal species. The genus Lippia Linn. comprises approximately 200 species widely studied for their chemical composition and bioactive potential. Lippia lasiocalycina Cham., a wild species native to Brazil, has been little studied from a phytochemical perspective, however, research indicates its volatile compounds have high fungicidal and larvicidal activity. The degradation of its natural habitats, due to anthropogenic actions, has endangered this plant genetic resource, so that conservation efforts are necessary. In this context, ecogeographical investigations are essential to assist in the formulation of strategies for the conservation and cultivation of the species. Thus, the research aimed to carry out the study with the species. Collection data for the specie were retrieved from the SpeciesLink platform, and based on the geographic coordinates of occurrence sites, data on climate, altitude, temperature, and precipitation were gathered. Additionally, information on biomes and soil classification was obtained in specialized platforms. Records were identified in 126 municipalities across 15 states, 13 in Brazil, one in Bolivia, and one in Paraguay. The species was found in throughout Brazil, primarily in the Northeast, Midwest, and Southeast regions, predominantly in the states of Bahia, São Paulo, and Minas Gerais, and showed tolerance to a wide range of temperature, annual precipitation, altitude, and relative humidity. Furthermore, the species showed greater affinity for areas with dystrophic soils, mostly occurring in the Cerrado biome and regions with tropical climate, in well-drained Red Latosol soils with low cation exchange capacity, low fertility, and acidic pH.

Ecogeographic research into how species' forms vary across space, time, and climate has taken on new urgency due to contemporary global climate change. Research using museum specimens and other records to study biological rules like Bergmann's, Allen's, and Gloger's Rules has a long history and continues to generate publications and robust scientific debates. Despite the prevalence and history of the field, however, no simple guide on how to carry out such work has ever been published. To lower the barriers of entry for new researchers, this review was created as a practical guide on how to perform ecogeographic research. The guide consolidates disparately published methodologies into a single, convenient document that reviews the history and present of the field of ecogeographic rule research, and describes how to generate appropriate hypotheses, design experiments, gather, and analyze biotic and geographic data, and interpret the results in an ecologically meaningful manner. The result is a semi‐standardized guide that enables scientists at all levels from any institution to carry out an investigation from start to finish on any biological rule, taxon, and location of their choice.

One of the major challenges of ecologists and biogeographers is to understand how species are globally distributed. Two of the most well-studied large-scale patterns in species distributions are the Rapoport’s rule and the Latitudinal Diversity Gradient (LDG). We aimed to address whether Neotropical odonates follow the Rapoport’s rule and if there is a latitudinal gradient in species diversity. A total of 1076 records for 190 species, covering a large area from southeastern to the northern regions of Brazil that extends from 23°S (Cerrado) to 3°N (Amazon Rainforest). Generalized Linear Models were used to address whether Neotropical odonates follow the Rapoport’s rule, and if there is a latitudinal gradient in species diversity, based on our predictions. We found a Rapoport effect in the Amazon biome and an inverse Rapoport effect in the Amazon-Cerrado Transition Forest and Cerrado biome. Regarding LDG, we found no significant effect of latitude on species richness patterns when we considered all the species, and a significant relationship between species richness and latitude for zygopterans. The spatial patterns of odonates geographic distribution may be an outcome of geographical barriers, for instance, the continental geometry of South America, which is broader in the north and limits geographical expansion towards the south. Furthermore, species ecophysiological mechanisms may also hamper their expansion and drive the pattern observed in our study, mainly because of evolutionary thermoregulatory adaptations that each taxon exhibits along its environmental gradient.

Abstract Abstract. The expansive range of Lewis flax (Linum lewisii), an herbaceous perennial, exposes the species to a diversity of climatic conditions. As interest in the domestication and adoption of perennial crop alternatives grows and interest in this species for natural area restoration continues, the assurance of a commercial plant variety’s ability to endure the full range of possible climatic extremes is paramount. This study examines the freezing tolerance of a geographically representative sampling of 44 Lewis flax accessions at winter temperature extremes experienced in the northern Great Plains of the USA. Survival analysis models were adapted to include temperature exposure, in replacement of ordinal time typically used in such models, to produce statistics evaluating reactions to extreme temperatures that Lewis flax would encounter in our field environments. Our results revealed Lewis flax is more freezing tolerant than previously reported, and revealed four accessions with significantly superior genetic freezing tolerance than the released ‘Maple Grove’ cultivar. Furthermore, regrowth analyses indicate variation among accessions not associated with survival, which could lead to improving regrowth rate and survival simultaneously. These findings and their methodology expand the understanding of Lewis flax adaptation for winter hardiness and offer an efficient, new model that can be used to evaluate freezing tolerance at ordinal temperatures without requiring extensive prior physiological knowledge for a species. This paper demonstrates that considerable diversity in tolerance to freezing temperatures exists among populations of Lewis flax (Linum lewisii ) throughout its range of western North America. Some of the freezing tolerance diversity is predicted by climate at the site of collection, but these relationships are complex. Differences in the rate of growth of seedlings exist independently within the range of freezing tolerance, suggesting that rapid seedling growth and freezing tolerance can be found together. This information is important to plant biologists interested in native plant restoration and novel oilseed domestication for agriculture.