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Structure–function relationships are central to many ecological paradigms. Chief among these is the linkage of net primary production (NPP) with species diversity and canopy structure. Using the National Ecological Observatory Network (NEON) as a subcontinental-scale research platform, we examined how temperate-forest NPP relates to several measures of site-level canopy structure and tree species diversity. Novel multidimensional canopy traits describing structural complexity, most notably canopy rugosity, were more strongly related to site NPP than were species diversity measures and other commonly characterized canopy structural features. The amount of variation in site-level NPP explained by canopy rugosity alone was 83%, which was substantially greater than that explained individually by vegetation area index (31%) or Shannon’s index of species diversity (30%). Forests that were more structurally complex, had higher vegetation-area indices, or were more diverse absorbed more light and used light more efficiently to power biomass production, but these relationships were most strongly tied to structural complexity. Implications for ecosystem modeling and management are wide ranging, suggesting structural complexity traits are broad, mechanistically robust indicators of NPP that, in application, could improve the prediction and management of temperate forest carbon sequestration.

Long-term global data sets of vegetation Leaf Area Index (LAI) and Fraction of Photosynthetically Active Radiation absorbed by vegetation (FPAR) are critical to monitoring global vegetation dynamics and for modeling exchanges of energy, mass and momentum between the land surface and planetary boundary layer. LAI and FPAR are also state variables in hydrological, ecological, biogeochemical and crop-yield models. The generation, evaluation and an example case study documenting the utility of 30-year long data sets of LAI and FPAR are described in this article. A neural network algorithm was first developed between the new improved third generation Global Inventory Modeling and Mapping Studies (GIMMS) Normalized Difference Vegetation Index (NDVI3g) and best-quality Terra Moderate Resolution Imaging Spectroradiometer (MODIS) LAI and FPAR products for the overlapping period 2000–2009. The trained neural network algorithm was then used to generate corresponding LAI3g and FPAR3g data sets with the following attributes: 15-day temporal frequency, 1/12 degree spatial resolution and temporal span of July 1981 to December 2011. The quality of these data sets for scientific research in other disciplines was assessed through (a) comparisons with field measurements scaled to the spatial resolution of the data products, (b) comparisons with broadly-used existing alternate satellite data-based products, (c) comparisons to plant growth limiting climatic variables in the northern latitudes and tropical regions, and (d) correlations of dominant modes of interannual variability with large-scale circulation anomalies such as the EI Niño-Southern Oscillation and Arctic Oscillation. These assessment efforts yielded results that attested to the suitability of these data sets for research use in other disciplines. The utility of these data sets is documented by comparing the seasonal profiles of LAI3g with profiles from 18 state-of-the-art Earth System Models: the models consistently overestimated the satellite-based estimates of leaf area and simulated delayed peak seasonal values in the northern latitudes, a result that is consistent with previous evaluations of similar models with ground-based data. The LAI3g and FPAR3g data sets can be obtained freely from the NASA Earth Exchange (NEX) website.

The aim of this paper is to assess the latest version of the MODIS LAI/FPAR product (MOD15A2H), namely Collection 6 (C6). We comprehensively evaluate this product through three approaches: validation with field measurements, intercomparison with other LAI/FPAR products and comparison with climate variables. Comparisons between ground measurements and C6, as well as C5 LAI/FPAR indicate: (1) MODIS LAI is closer to true LAI than effective LAI; (2) the C6 product is considerably better than C5 with RMSE decreasing from 0.80 down to 0.66; (3) both C5 and C6 products overestimate FPAR over sparsely-vegetated areas. Intercomparisons with three existing global LAI/FPAR products (GLASS, CYCLOPES and GEOV1) are carried out at site, continental and global scales. MODIS and GLASS (CYCLOPES and GEOV1) agree better with each other. This is expected because the surface reflectances, from which these products were derived, were obtained from the same instrument. Considering all biome types, the RMSE of LAI (FPAR) derived from any two products ranges between 0.36 (0.05) and 0.56 (0.09). Temporal comparisons over seven sites for the 2001–2004 period indicate that all products properly capture the seasonality in different biomes, except evergreen broadleaf forests, where infrequent observations due to cloud contamination induce unrealistic variations. Thirteen years of C6 LAI, temperature and precipitation time series data are used to assess the degree of correspondence between their variations. The statistically-significant associations between C6 LAI and climate variables indicate that C6 LAI has the potential to provide reliable biophysical information about the land surface when diagnosing climate-driven vegetation responses.

As the latest version of Moderate Resolution Imaging Spectroradiometer (MODIS) Leaf Area Index (LAI) and Fraction of Photosynthetically Active Radiation (FPAR) products, Collection 6 (C6) has been distributed since August 2015. This collection is evaluated in this two-part series with the goal of assessing product accuracy, uncertainty and consistency with the previous version. In this first paper, we compare C6 (MOD15A2H) with Collection 5 (C5) to check for consistency and discuss the scale effects associated with changing spatial resolution between the two collections and benefits from improvements to algorithm inputs. Compared with C5, C6 benefits from two improved inputs: (1) L2G–lite surface reflectance at 500 m resolution in place of reflectance at 1 km resolution; and (2) new multi-year land-cover product at 500 m resolution in place of the 1 km static land-cover product. Global and seasonal comparison between C5 and C6 indicates good continuity and consistency for all biome types. Moreover, inter-annual LAI anomalies at the regional scale from C5 and C6 agree well. The proportion of main radiative transfer algorithm retrievals in C6 increased slightly in most biome types, notably including a 17% improvement in evergreen broadleaf forests. With same biome input, the mean RMSE of LAI and FPAR between C5 and C6 at global scale are 0.29 and 0.091, respectively, but biome type disagreement worsens the consistency (LAI: 0.39, FPAR: 0.102). By quantifying the impact of input changes, we find that the improvements of both land-cover and reflectance products improve LAI/FPAR products. Moreover, we find that spatial scale effects due to a resolution change from 1 km to 500 m do not cause any significant differences.

Uncertainty assessment of the moderate resolution imaging spectroradiometer (MODIS) leaf area index (LAI) and the fraction of photosynthetically active radiation absorbed by vegetation (FPAR) retrieval algorithm can provide a scientific basis for the usage and improvement of this widely-used product. Previous evaluations generally depended on the intercomparison with other datasets as well as direct validation using ground measurements, which mix the uncertainties from the model, inputs, and assessment method. In this study, we adopted the evaluation method based on three-dimensional radiative transfer model (3D RTM) simulations, which helps to separate model uncertainty and other factors. We used the well-validated 3D RTM LESS (large-scale remote sensing data and image simulation framework) for a grassland scene simulation and calculated bidirectional reflectance factors (BRFs) as inputs for the LAI/FPAR retrieval. The dependency between LAI/FPAR truth and model estimation serves as the algorithm uncertainty indicator. This paper analyzed the LAI/FPAR uncertainty caused by inherent model uncertainty, input uncertainty (BRF and biome classification), clumping effect, and scale dependency. We found that the uncertainties of different algorithm paths vary greatly (−6.61% and +84.85% bias for main and backup algorithm, respectively) and the “hotspot” geometry results in greatest retrieval uncertainty. For the input uncertainty, the BRF of the near-infrared (NIR) band has greater impacts than that of the red band, and the biome misclassification also leads to nonnegligible LAI/FPAR bias. Moreover, the clumping effect leads to a significant LAI underestimation (−0.846 and −0.525 LAI difference for two clumping types), but the scale dependency (pixel size ranges from 100 m to 1000 m) has little impact on LAI/FPAR uncertainty. Overall, this study provides a new perspective on the evaluation of LAI/FPAR retrieval algorithms.

The fraction of absorbed photosynthetically active radiation (FPAR) is a key variable in the model of vegetation productivity. Vegetation indices (VIs) that were derived from instantaneous remote-sensing data have been successfully used to estimate the FPAR of a day or a longer period. However, it has not yet been verified whether continuous VIs can be used to accurately estimate the diurnal dynamics of a vegetation canopy FPAR, which may fluctuate dramatically within a day. In this study, we measured the high temporal resolution spectral data (480 to 850 nm) and FPAR data of a maize canopy from the jointing stage to the tasseling stage under different irrigation and illumination conditions using two automatic observation systems. To estimate the FPAR, we developed regression models based on a quadratic function using 13 kinds of VIs. The results show the following: (1) Under nondrought conditions, although the illumination condition (sunny or cloudy) influenced the trend of the canopy diurnal FPAR, it had only a slight effect on the model accuracies of the FPAR-VIs. The maximum coefficients of determination (R2) of the FPAR-VIs models generated for the sunny nondrought data, the cloudy nondrought data, and all of the nondrought data were 0.895, 0.88, and 0.828, respectively. The VIs—including normalized difference vegetation index (NDVI), green NDVI (GNDVI), red-edge simple ratio (SR705), modified simple ratio 2 (mSR2), red-edge normalized difference vegetation index (NDVI705), and enhanced vegetation index (EVI)—that were related to the canopy structure had higher estimation accuracies (R2 > 0.8) than the other VIs that were related to the soil adjustment, chlorophyll, and physiology. The estimation accuracies of the GNDVI and some red-edge VIs (including NDVI705, SR705, and mSR2) were higher than the estimation accuracy of the NDVI. (2) Under drought stress, the FPAR decreased significantly because of leaf wilting and the effective leaf area index decrease around noon. When we included drought data in the model, accuracies were reduced dramatically and the R2 value of the best model was only 0.59. When we built the regression models based only on drought data, the EVI, which can weaken the influence of soil, had the best estimate accuracy (R2 = 0.68).

The fraction of absorbed photosynthetically active radiation (FPAR) is a key physiological variable for characterizing vegetation structure and associated matter and energy exchange processes. Accurate and effective monitoring of FPAR is essential for understanding ecosystem functioning. However, systematic biases among existing ground-based observation techniques hinder the effective integration of FPAR data, limiting its potential for spatial scaling. This study selected five ground-based observation techniques, FPARnet, LAI-NOS, LAINet, LAI-2200, and digital hemispherical photography (DHP), based on the existing FPAR and LAI observation techniques at Wanglang Station, to develop a PAIe-LAI-FPAR conversion model using the Beer–Lambert law. The correlation and consistency of FPAR derived from different observation techniques were comparatively analyzed. On this basis, a normalization-calibration model based on regression was developed for FPARLAI-NOS, FPARLAI-2200, and FPARDHP, using FPARFPARnet as the reference. Comparative analysis results show that FPARLAI-NOS and FPARFPARnet, as well as FPARLAI-2200 and FPARDHP with FPARLAI-NOS, exhibit good correlation and consistency (R ≥ 0.9, RMSEobs ≤ 0.08). However, FPARLAINet shows a relatively weak correlation with FPARFPARnet (R = 0.12). After normalization-calibration, the consistency among multi-source FPAR observations was significantly improved (R remains unchanged, and the average RMSEobs decreases by approximately 7.8%. The sample points are more closely aligned along the y = x line after calibration). This study provides a practical reference for the normalization-calibration of FPAR observations in mountainous forests based on multi-source ground-based observation techniques.

Fraction of photosynthetically active radiation (FPAR), as an important index for evaluating yields and biomass production, is key to providing the guidance for crop management. However, the shortage of good hyperspectral data can frequently result in the hindrance of accurate and reliable FPAR assessment, especially for wheat. In the present research, aiming at developing a strategy for accurate FPAR assessment, the relationships between wheat canopy FPAR and vegetation indexes derived from concurrent ground-measured hyperspectral data were explored. FPAR revealed the most strongly correlation with normalized difference index (NDI), and scaled difference index (N ). Both NDI and N revealed the increase as the increase of FPAR; however, NDI value presented the stagnation as FPAR value beyond 0.70. On the other hand, N showed a decreasing tendency when FPAR value was higher than 0.70. This special relationship between FPAR and vegetation index could be employed to establish a piecewise FPAR assessment model with NDI as a regression variable during FPAR value lower than 0.70, or N as the regression variable during FPAR value higher than 0.70. The model revealed higher assessment accuracy up to 16% when compared with FPAR assessment models based on a single vegetation index. In summary, it is feasible to apply NDI and N for accomplishing wheat canopy FPAR assessment, and establish an FPAR assessment model to overcome the limitations from vegetation index saturation under the condition with high FPAR value.

The operational Moderate Resolution Imaging Spectroradiometer (MODIS) Leaf Area Index (LAI) and Fraction of Photosynthetically Active Radiation absorbed by vegetation (FPAR) algorithm has been successfully implemented for Visible Infrared Imager Radiometer Suite (VIIRS) observations by optimizing a small set of configurable parameters in Look-Up-Tables (LUTs). Our preliminary evaluation showed reasonable agreement between VIIRS and MODIS LAI/FPAR retrievals. However, there is a need for a more comprehensive investigation to assure continuity of multi-sensor global LAI/FPAR time series, as the preliminary evaluation was spatiotemporally limited. In this study, we use a multi-year (2012–2016) global LAI/FPAR product generated from VIIRS and MODIS to evaluate for spatiotemporal consistency. We also quantify uncertainty of the product by utilizing available ground measurements. For both consistency and uncertainty evaluation, we account for variations in biome type and temporal resolution. Our results indicate that the LAI/FPAR retrievals from VIIRS and MODIS are consistent at different spatial (i.e., global and site) and temporal (i.e., 8-day, seasonal and annual) scales. The estimate of mean discrepancy (−0.006 ± 0.013 for LAI and −0.002 ± 0.002 for FPAR) meets the stability requirement for long-term LAI/FPAR Earth System Data Records (ESDRs) from multi-sensors as suggested by the Global Climate Observing System (GCOS). It is noteworthy that the rate of retrievals from the radiative transfer-based main algorithm is also comparable between two sensors. However, a relatively larger discrepancy over tropical forests was observed due to reflectance saturation and an unexpected interannual variation of main algorithm success was noticed due to instability in input surface reflectances. The uncertainties/relative uncertainties of VIIRS and MODIS LAI (FPAR) products assessed through comparisons to ground measurements are estimated to be 0.60/42.2% (0.10/24.4%) and 0.55/39.3% (0.11/26%), respectively. Note that the validated LAI were only distributed in low domains (~2.5), resulting in large relative uncertainty. Therefore, more ground measurements are needed to achieve a more comprehensive evaluation result of product uncertainty. The results presented here generally imbue confidence in the consistency between VIIRS and MODIS LAI/FPAR products and the feasibility of generating long-term multi-sensor LAI/FPAR ESDRs time series.

Wetland ecosystems, particularly marsh wetlands, are vital for carbon cycling, yet the accurate estimation of the fraction of absorbed photosynthetically active radiation (FPAR) in these environments is challenging due to their complex structure and limited field data. This study employs the large-scale remote sensing data and image simulation framework (LESS), a 3D radiative transfer model, to simulate FPAR and vegetation indices (VIs) under controlled conditions, including variations in vegetation types, soil types, chlorophyll content, solar and observation angles, and plant density. By simulating 8064 wetland scenes, we overcame the limitations of field measurements and conducted comprehensive quantitative analyses of the relationship between the FPAR and VI (which is essential for remote sensing-based FPAR estimation). Nine VIs (NDVI, GNDVI, SAVI, RVI, EVI, MTCI, DVI, kNDVI, RDVI) effectively characterized FPAR, with the following saturation thresholds quantified: inflection points (FPAR.inf, where saturation begins) ranged from 0.423 to 0.762 (mean = 0.594) and critical saturation points (FPAR.sat, where saturation is complete) from 0.654 to 0.889 (mean = 0.817). The Enhanced Vegetation Index (EVI) and Soil-Adjusted Vegetation Index (SAVI) showed the highest robustness against saturation and environmental variability for FPAR estimation in reed (Phragmites australis) marshes. These findings provide essential support for FPAR estimation in marsh wetlands and contribute to quantitative studies of wetland carbon cycling.