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Two sets of reciprocal introgression line (IL) populations, i.e., ILs with Lemont as recurrent parent (IL_LT) and ILs with Teqing as recurrent parent (IL_TQ), were developed and evaluated for traits representing panicle size, including primary branch number (PBN), secondary branch number (SBN), and spikelet number per panicle (SNP). Together with the regression to recurrent parent by advanced backcross, transgressive segregations were observed for all traits. Correlation and regression analysis showed that SBN had much higher contribution to SNP than PBN. It was confirmed by the QTL analysis that many common loci were detected between SBN and SNP, in comparison with single common locus between PBN and SNP. One and three main effect QTLs (M-QTLs) were detected for PBN in IL_LT and IL_TQ, respectively. Six M-QTLs per trait per populations were associated with SBN and SNP. Less number and lower contribution of epistasis were detected in IL populations in comparison with mapping result from F ₂ or RI population. There were only four QTLs in fourteen loci (near 30%) commonly detected in both reciprocal IL populations implying the large impact of genetic background on QTLs expression.

Cabbage is an economically important vegetable worldwide. Cabbage Fusarium Wilt (CFW) is a destructive disease that results in considerable yield and quality losses in cole crops. The use of CFW-resistant varieties is the most effective strategy to mitigate the effects of CFW. 01-20 is an elite cabbage line with desirable traits and a high combining ability, but it is highly susceptible to CFW. To rapidly transfer a CFW resistance gene into 01-20 plants, we used microspore cultures to develop 230 doubled haploid (DH) lines from a cross between 01-20 (highly susceptible) and 96-100 (highly resistant). One of the generated DH lines (i.e., D134) was highly resistant to CFW and exhibited a phenotypic performance that was similar to that of line 01-20. Therefore, D134 was applied as the resistance donor parent. We generated 24 insertion-deletion markers using whole genome resequencing data for lines 01-20 and 96-100 to analyze the genomic backgrounds of backcross (BC) progenies. Based on the CFW resistance gene , a simple sequence repeat (SSR) marker (i.e., Frg13) was developed for foreground selections. We screened 240 BC individuals and 280 BC individuals with these markers and assessed their phenotypic performance. The proportion of recurrent parent genome (PRPG) of the best individuals in BC and BC were 95.8 and 99.1%. Finally, a best individual designated as YR01-20 was identified from 80 BC F individuals, with homozygous allele and genomic background and phenotype almost the same as those of 01-20. Our results may provide a rapid and efficient way of improving elite lines through the combined application of microspore culture, whole-genome background analysis, and disease resistance-specific marker selection. Additionally, the cabbage lines developed in this study represent elite materials useful for the breeding of new CFW-resistant cabbage varieties.

The Septoria blotch is one of the most economically harmful diseases of common wheat in Russia and the world. The disease is mainly caused by two pathogen species: Zymoseptoria tritici that damages the leaves, and Parastagonospora nodorum that strikes the leaves and ears. Resistance genes of the alien relatives are traditionally used for genetic defense of cultivars. The aims of the research were to study the resistance of the tall wheatgrass Thinopyrum ponticum (Podp.) Z.-W. Liu and R.-C. Wang and perspective introgressive lines of spring common wheat with its genetic material to Septoria blotch, and to characterize their agronomical properties to be used in breeding programs in Western Siberia. The studies were carried out in 2015–2019 in the field conditions of the southern forest-steppe (Omsk, Russia) on a natural infection background and according to standard methods. The Septoria diseases developed on the wheat in the period of milk-wax ripeness, independently of humid or dry weather conditions. In 2016, a sharp increase in leaf lesion was noted, probably associated with changes in the Z. tritici population. In 2017, the ratio of Z. tritici and P. nodorum was similar, and in 2019 Z. tritici prevailed. During the research, the lines that combined leaf and ear resistance to damage with high yield and grain quality were selected.

We applied a genomic in situ hybridization (GISH) to analyze the genomic constitution of and meiotic pairing in interspecific somatic hybrids, and in a wide subset of backcrossing derivatives (BC1–BC5), from three interspecific combinations involving the cultivated potato, Solanum tuberosum (AAAA genome), and three diploid (1 EBN) wild Mexican potato species (genome BB)—S. tarnii, S. pinnatisectum, and S. bulbocastanum. The theoretically expected genomic composition was detected in the somatic hybrids (AAAABB) and in the BC1 progeny (AAAAB), whereas in the subsequent BC2–BC4 generations, the partial loss of alien chromosomes was observed and almost all the BC5 genotypes showed a complete chromosome elimination of wild species. GISH revealed a homoeologous pairing between the chromosomes of the A- and the B-genomes in each of the hybrid progenies. Using GISH, we selected introgression lines with a single chromosome of the wild species in a potato genome background, as well as introgression lines with intergenomic recombinant chromosomes. Moreover, via molecular screening, BC hybrids with diagnostic markers for the R-genes conferring resistance to late blight disease and to the quarantine pest of the potato–Columbia root-knot nematode—were selected. The potential application of the results obtained for the planning of introgressive schemes directed to the breeding of advanced lines with multiple disease and pest resistance is discussed.

Wild relatives of cultivated potato are used in breeding to increase the genetic diversity of Solanum tuberosum (AAAA genome) varieties. Wild Mexican allotetraploid species Solanum stoloniferum (AABB genome) was used in breeding for extreme resistance to viruses and late blight. In this study, genomic in situ hybridization (GISH) was used for visualization of introgression of genetic material of the B subgenome of S. stoloniferum into the genome of backcross hybrids. The fertile hexaploid hybrid had 48 chromosomes of the A genome and 24 chromosomes of the B subgenome. Plants of the BC1 generation were pentaploid having the AAAAB genome constitution and three selected BC2 hybrids were aneuploid, containing one to six chromosomes of the B subgenome and 48 chromosomes of the A genome. The B subgenome of S. stoloniferum was inherited in the backcross generations as single chromosomes and in rare cases as recombinant chromosomes. GISH showed that chromosome pairing in the backcross hybrids was predominantly intragenomic. Most chromosomes of the B subgenome remained as univalents in backcross hybrids. Rare homeologous A/B chromosome pairing was detected in all analyzed hybrids. The obtained data indicate that the B subgenome of S. stoloniferum was able to recombine with the A genome.

AbstractIn two introgressive lines of bread wheat (15-7-1 and 15-7-2), which differ in the allelic status of the Gpc-B1 gene, the expression of the gene encoding the HMA2 transport protein in flag leaves under optimum Zn content in substrate (2 µМ) and in its deficiency (0 µМ) was investigated. This is the first study to show that the plants carrying functional allele of the Gpc-В1 gene (line 15-7-1) have a higher level of TaHMA2 transcripts than the plants with nonfunctional allele of the Gpc-В1 gene (line 15-7-2) both at optimum Zn content in substrate and at its deficiency. Importantly, the high TaHMA2 gene expression did not affect the wheat shoot growth but correlated with a high Zn concentration in the aboveground part of plants. It is assumed that the NAC transcription factor encoded by the Gpc-В1 gene may be involved in the regulation of the ТаНМА2 gene expression.

The number of dominant Vrn genes in common wheat, Triticum aestivum L., is estimated. Data were obtained supporting Pugsley's and Gotoh's data on the presence of a dominant gene Vrn4 in near-isogenic line 'Triple Dirk F'. The presence of a dominant gene Vrn4 in line 'Gabo-2' of cultivar 'Gabo', which was used by Pugsley as a donor of the gene Vrn4 for the near-isogenic line 'Triple Dirk F', was also confirmed. The Vrn2 and Vrn4 relationship and their chromosomal location are discussed. It was demonstrated that the dominant Vrn8 gene which was introgressed from Triticum sphaerococcum to common wheat by Stelmakh and Avsenin is allelic to Vrn4. While genes Vrn6(sc) and Vrn7(sc) which were introgressed from rye, Secale cereale L., by the above-mentioned authors are not allelic to the genes Vrn1, Vrn2, Vrn3 and Vrn4.

Three accessions of diploid wheat Triticum monococcum var. monococcum (AmAm) evaluated in respect of response of spikes to sprouting showed a markedly high values of sprouting resistance indices (number of sprouted kernels/spike, Hagbergs' Falling Number). The genome of T. monococcum var. monococcum (f. macedonicum Papag.) was incorporated into two triticale strains representing high and moderately level of susceptibility to sprouting. The appropriate two sets of introgressive triticale/T. monococcum lines were analysed in respect of variation of mature spikes sprouting (SR) and Falling Number (FN) values. The results showed different manner of inheritance of both characters. Full expression of Triticum monococcum genetic material responsible for resistance of mature spikes to sprouting was found and it was independent on hexaploid triticale recipient parent. In opposite to this, FN values higher than 200 sec. were originated on the basis of specific combination property of Triticum monococcum and triticale genes.

Fiber length (FL) and strength (FS) are the core indicators for evaluating cotton fiber quality. The corresponding stages of fiber elongation and secondary wall thickening are of great significance in determining FL and FS formation, respectively. QTL mapping and high-throughput sequencing technology have been applied to dissect the molecular mechanism of fiber development. In this study, 15 cotton chromosome segment substitution lines (CSSLs) with significant differences in FL and FS, together with their recurrent parental Gossypium hirsutum line CCRI45 and donor parent G. barbadense line Hai1, were chosen to conduct RNA-seq on developing fiber samples at 10 days post anthesis (DPA) and 20 DPA. Differentially expressed genes (DEGs) were obtained via pairwise comparisons among all 24 samples (each one with three biological repeats). A total of 969 DEGs related to FL-high, 1285 DEGs to FS-high, and 997 DEGs to FQ-high were identified. The functional enrichment analyses of them indicated that the GO terms of cell wall structure and ROS, carbohydrate, and phenylpropanoid metabolism were significantly enriched, while the GO terms of glucose and polysaccharide biosynthesis, and brassinosteroid and glycosylphosphatidylinositol metabolism could make great contributions to FL and FS formation, respectively. Weighted gene co-expressed network analyses (WGCNA) were separately conducted for analyzing FL and FS traits, and their corresponding hub DEGs were screened in significantly correlated expression modules, such as EXPA8, XTH, and HMA in the fiber elongation and WRKY, TDT, and RAC-like 2 during secondary wall thickening. An integrated analysis of these hub DEGs with previous QTL identification results successfully identified a total of 33 candidate introgressive DEGs with non-synonymous mutations between the Gh and Gb species. A common DEG encoding receptor-like protein kinase 1 was reported to likely participate in fiber secondary cell thickening regulation by brassionsteroid signaling. Such valuable information was conducive to enlightening the developing mechanism of cotton fiber and also provided an abundant gene pool for further molecular breeding.