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Background The advancements in unmanned aerial vehicle (UAV) technology have recently emerged as an effective, cost-efficient, and versatile solution for monitoring crop growth with high spatial and temporal precision. This monitoring is usually achieved through the computation of vegetation indices (VIs) from agricultural lands. The VIs are based on the incoming radiance to the camera, which is affected when there is a change in the scene illumination. Such a change will cause a change in the VIs and subsequent measures, e.g., the VI-based chlorophyll-content estimation. In an ideal situation, the results from VIs should be free from the impact of scene illumination and should reflect the true state of the crop’s condition. In this paper, we evaluate the performance of various VIs computed on images taken under sunny, overcast and partially cloudy days. To improve the invariance to the scene illumination, we furthermore evaluated the use of the empirical line method (ELM), which calibrates the drone images using reference panels, and the multi-scale Retinex algorithm, which performs an online calibration based on color constancy. For the assessment, we used the VIs to predict leaf chlorophyll content, which we then compared to field measurements. Results The results show that the ELM worked well when the imaging conditions during the flight were stable but its performance degraded under variable illumination on a partially cloudy day. For leaf chlorophyll content estimation, The r 2 of the multivariant linear model built by VIs were 0.6 and 0.56 for sunny and overcast illumination conditions, respectively. The performance of the ELM-corrected model maintained stability and increased repeatability compared to non-corrected data. The Retinex algorithm effectively dealt with the variable illumination, outperforming the other methods in the estimation of chlorophyll content. The r 2 of the multivariable linear model based on illumination-corrected consistent VIs was 0.61 under the variable illumination condition. Conclusions Our work indicated the significance of illumination correction in improving the performance of VIs and VI-based estimation of chlorophyll content, particularly in the presence of fluctuating illumination conditions.

Crop leaf chlorophyll content (LCC) and fractional vegetation cover (FVC) are crucial indicators for assessing crop health, growth development, and maturity. In contrast to the traditional manual collection of crop trait parameters, unmanned aerial vehicle (UAV) technology rapidly generates LCC and FVC maps for breeding materials, facilitating prompt assessments of maturity information. This study addresses the following research questions: (1) Can image features based on pretrained deep learning networks and ensemble learning enhance the estimation of remote sensing LCC and FVC? (2) Can the proposed adaptive normal maturity detection (ANMD) algorithm effectively monitor maize maturity based on LCC and FVC maps? We conducted the following tasks: (1) Seven phases (tassel initiation to maturity) of maize canopy orthoimages and corresponding ground-truth data for LCC and six phases of FVC using UAVs were collected. (2) Three features, namely vegetation indices (VI), texture features (TF) based on Gray Level Co-occurrence Matrix, and deep features (DF), were evaluated for LCC and FVC estimation. Moreover, the potential of four single-machine learning models and three ensemble models for LCC and FVC estimation was evaluated. (3) The estimated LCC and FVC were combined with the proposed ANMD to monitor maize maturity. The research findings indicate that (1) image features extracted from pretrained deep learning networks more accurately describe crop canopy structure information, effectively eliminating saturation effects and enhancing LCC and FVC estimation accuracy. (2) Ensemble models outperform single-machine learning models in estimating LCC and FVC, providing greater precision. Remarkably, the stacking + DF strategy achieved optimal performance in estimating LCC (coefficient of determination (R2): 0.930; root mean square error (RMSE): 3.974; average absolute error (MAE): 3.096); and FVC (R2: 0.716; RMSE: 0.057; and MAE: 0.044). (3) The proposed ANMD algorithm combined with LCC and FVC maps can be used to effectively monitor maize maturity. Establishing the maturity threshold for LCC based on the wax ripening period (P5) and successfully applying it to the wax ripening-mature period (P5–P7) achieved high monitoring accuracy (overall accuracy (OA): 0.9625–0.9875; user’s accuracy: 0.9583–0.9933; and producer’s accuracy: 0.9634–1). Similarly, utilizing the ANMD algorithm with FVC also attained elevated monitoring accuracy during P5–P7 (OA: 0.9125–0.9750; UA: 0.878–0.9778; and PA: 0.9362–0.9934). This study offers robust insights for future agricultural production and breeding, offering valuable insights for the further exploration of crop monitoring technologies and methodologies.

Chlorophyll is a vital indicator of vegetation growth; exploring its relationship with external influencing factors is essential for studies such as chlorophyll remote sensing retrieval and vegetation growth monitoring. However, there has been limited in-depth exploration of the spatial distribution of leaf chlorophyll content (LCC) and its influencing factors across large-scale areas with varying climates and terrains. To investigate the primary influencing factors and degrees of various environmental factors on LCC, this study employed the Geodetector Model (GDM) and the LCC satellite products in Sichuan Province in 2020 to investigate the impact of relationships between nine environmental factors (meteorology, topography, and vegetation types) and the ecosystem LCC at a regional scale. The results indicated the following: (1) Elevation (q-value = 49.31%) is the primary factor determining photosynthesis in Sichuan Province, followed by temperature (46.10%) and vegetation types (40.73%). The impact of topographical factors on LCC distribution is higher than that of meteorological factors and vegetation types in terrain with complex topography. The elevation effectively distinguishes the variations in climate factors and vegetation types. (2) Combining the influencing factors pairwise increased the combined q-values. The combination of elevation with other factors yielded the highest combined q-value. (3) The q-values for all influencing factors are higher in winter and spring and lowest in summer. Different influencing factors exhibited more substantial constraints on vegetation photosynthesis during winter and spring, significantly reducing influence during summer. (4) The different primary factors drive or constrain vegetation photosynthesis in different climate zones due to their distinct temperature and humidity characteristics. The findings of this study provide a basis for future research on vegetation change analysis and dynamic monitoring of vegetation LCC in different terrains.

The main objective of this study was to investigate soil–plant–water interactions based on field measurements of plant reflectance and soil water content (SWC) in different inter-row managed sloping vineyards. The following three different soil management applications were studied: tilled (T), cover crops (CC), and permanent grass (NT) inter-rows. We measured SWCs within the row and between rows of vines. Each investigated row utilized 7 to 10 measurement points along the slope. Topsoil SWC and temperature, leaf NDVI and chlorophyll concentrations and leaf area index (LAI) were measured every two weeks over the vegetation period (May to November) using handheld instruments. We found that management method and slope position can significantly affect the soil’s physical and chemical properties, such as clay or soil organic carbon contents. Cover crops in the inter-row significantly reduced average SWC. The in-row average topsoil SWCs and temperatures were lower in all study sites compared to the values measured in between rows. Significantly higher SWCs were observed for the upper points compared to the lower ones for CC and T treatments (58.0 and 60.9%, respectively), while the opposite was noted for NT. Grassed inter-row grapevines had significantly lower leaf chlorophyll content than the other inter-row managed sites (p < 0.001). The highest average leaf chlorophyll contents were observed in the T vineyard (16.89 CCI). Based on slope positions, the most distinguishable difference was observed for the CC: 27.7% higher chlorophyll values were observed at the top of the slope compared to the grapevine leaves at the bottom of the slope (p < 0.01). The leaf NDVI values were not as profoundly influenced by slope position in the vineyard as the chlorophyll values were. For overall LAI values, the T treatment had significantly lower values compared to NT and CC (p < 0.001). Moderate correlations were observed between NDVI and LAI and soil nitrogen and carbon content. In general, we found that both inter-row management and slope position can significantly influence soil parameters and affect plant growth, and consequently can accelerate plant stress under sub-optimal environmental conditions such as prolonged drought.

Leaf chlorophyll content is an important indicator of the physiological and ecological functions of plants. Accurate estimation of leaf chlorophyll content is necessary to understand energy, carbon, and water exchange between plants and the atmosphere. The leaf chlorophyll content index (CCI) of 109 Moso bamboo samples (19 for training data, 19 for validation data, and 71 for extrapolation data) was measured from December 2019 to May 2021, while their corresponding red–green–blue (RGB) images were acquired using an unmanned aerial vehicle (UAV) platform. A method for estimating leaf CCI based on constructing relationships between field leaf CCI measurements and UAV RGB images was evaluated. The results showed that a modified excess blue minus excess red index and 1.4 × H-S in the hue–saturation–value (HSV) color space were the most suitable variables for estimating the leaf CCI of Moso bamboo. No noticeable difference in accuracy between the linear regression model and backpropagation neural network (BPNN) model was found. Both models performed well in estimating leaf CCI, with an R2 > 0.85 and relative root mean square error (RMSEr) < 15.0% for the validation data. Both models failed to accurately estimate leaf CCI during the leaf-changing period (April to May in off-year), with the problems being overestimation in low leaf CCI and underestimation in high leaf CCI values. At a flight height of 120 m and illumination between 369 and 546 W/m2, the CCI for an independent sample dataset was accurately estimated by the models, with an R2 of 0.83 and RMSEr of 13.78%. Flight height and solar intensity played a role in increasing the generality of the models. This study provides a feasible and straightforward method to estimate the leaf CCI of Moso bamboo based on UAV RGB images.

• Leaf trait relationships are widely used to predict ecosystem function in terrestrial biosphere models (TBMs), in which leaf maximum carboxylation capacity (Vc,max), an important trait for modelling photosynthesis, can be inferred from other easier-to-measure traits. However, whether trait–Vc,max relationships are robust across different forest types remains unclear. • Here we used measurements of leaf traits, including one morphological trait (leaf mass per area), three biochemical traits (leaf water content, area-based leaf nitrogen content, and leaf chlorophyll content), one physiological trait (Vc,max), as well as leaf reflectance spectra, and explored their relationships within and across three contrasting forest types in China. • We found weak and forest type-specific relationships between Vc,max and the four morphological and biochemical traits (R² ≤ 0.15), indicated by significantly changing slopes and intercepts across forest types. By contrast, reflectance spectroscopy effectively collapsed the differences in the trait–Vc,max relationships across three forest biomes into a single robust model for Vc,max (R² = 0.77), and also accurately estimated the four traits (R² = 0.75–0.94). • These findings challenge the traditional use of the empirical trait–Vc,max relationships in TBMs for estimating terrestrial plant photosynthesis, but also highlight spectroscopy as an efficient alternative for characterising Vc,max and multitrait variability, with critical insights into ecosystem modelling and functional trait ecology.

Leaf area index (LAI) and chlorophyll content, at leaf and canopy level, are important variables for agricultural applications because of their crucial role in photosynthesis and in plant functioning. The goal of this study was to test the hypothesis that LAI, leaf chlorophyll content (LCC), and canopy chlorophyll content (CCC) of a potato crop can be estimated by vegetation indices for the first time using Sentinel-2 satellite images. In 2016 ten plots of 30 × 30 m were designed in a potato field with different fertilization levels. During the growing season approximately 10 daily radiometric field measurements were used to determine LAI, LCC, and CCC. These radiometric determinations were extensively calibrated against LAI2000 and chlorophyll meter (SPAD, soil plant analysis development) measurements for potato crops grown in the years 2010–2014. Results for Sentinel-2 showed that the weighted difference vegetation index (WDVI) using bands at 10 m spatial resolution can be used for estimating the LAI (R2 of 0.809; root mean square error of prediction (RMSEP) of 0.36). The ratio of the transformed chlorophyll in reflectance index and the optimized soil-adjusted vegetation index (TCARI/OSAVI) showed to be a good linear estimator of LCC at 20 m (R2 of 0.696; RMSEP of 0.062 g·m−2). The performance of the chlorophyll vegetation index (CVI) at 10 m spatial resolution was slightly worse (R2 of 0.656; RMSEP of 0.066 g·m−2) compared to TCARI/OSAVI. Finally, results showed that the green chlorophyll index (CIgreen) was an accurate and linear estimator of CCC at 10 m (R2 of 0.818; RMSEP of 0.29 g·m−2). Results for CIgreen were better than for the red-edge chlorophyll index (CIred-edge, R2 of 0.576, RMSE of 0.43 g·m−2). Our results show that Sentinel-2 bands at 10 m spatial resolution are suitable for estimating LAI, LCC, and CCC, avoiding the need for red-edge bands that are only available at 20 m. This is an important finding for applying Sentinel-2 data in precision agriculture.

Leaf chlorophyll content (LCC) is an indicator of leaf photosynthetic capacity. It is crucial for improving the understanding of plant physiological status. SPAD meters are routinely used to provide an instantaneous estimation of in situ LCC. However, the calibration of meter readings into absolute measures of LCC is difficult, and a generic approach for this conversion remains elusive. This study presents an evaluation of the approaches that are commonly used in converting SPAD readings into absolute LCC values. We compared these approaches using three field datasets and one synthetic dataset. The field datasets consist of LCC measured using a destructive method in the laboratory, as well as the SPAD readings measured in the field for various vegetation types. The synthetic dataset was generated with the leaf radiative transfer model PROSPECT-5 across different leaf structures. LCC covers a wide range from 1.40 μg cm−2 to 86.34 μg cm−2 in the field datasets, and it ranges from 5 μg cm−2 to 80 μg cm−2 in the synthetic dataset. The relationships between LCC and SPAD readings were examined using linear, polynomial, exponential, and homographic functions for the field and synthetic datasets. For the field datasets, the assessments of these approaches were conducted for (i) all three datasets together, (ii) individual datasets, and (iii) individual vegetation species. For the synthetic dataset, leaves with different leaf structures (which mimic different vegetation species) were grouped for the evaluation of the approaches. The results demonstrate that the linear function is the most accurate one for the simulated dataset, in which leaf structure is relatively simple due to the turbid medium assumption of the PROSPECT-5 model. The assumption of leaves in the PROSPECT-5 model complies with the assumption made in the designed algorithm of the SPAD meter. As a result, the linear relationship between LCC and SPAD values was found for the modeled dataset in which the leaf structure is simple. For the field dataset, the functions do not perform well for all datasets together, while they improve significantly for individual datasets or species. The overall performance of the linear (LCC=a∗SPAD+b), polynomial (LCC=a∗SPAD2+b∗SPAD+c), and exponential functions (LCC=0.0893∗10SPADα) is promising for various datasets and species with the R2 > 0.8 and RMSE <10 μg cm−2. However, the accuracy of the homographic functions (LCC=a∗SPAD/b−SPAD) changes significantly among different datasets and species with R2 from 0.02 of wheat to 0.92 of linseed (RMSE from 642.50 μg cm−2 to 5.74 μg cm−2). Other than species- and dataset-dependence, the homographic functions are more likely to produce a numerical singularity due to the characteristics of the function per se. Compared with the linear and exponential functions, the polynomial functions have a higher degree of freedom due to one extra fitting parameter. For a smaller size of data, the linear and exponential functions are more suitable than the polynomial functions due to the less fitting parameters. This study compares different approaches and addresses the uncertainty in the conversion from SPAD readings into absolute LCC, which facilitates more accurate measurements of absolute LCC in the field.

Background The present study aims to study the effects of biofertilizers potential of Arbuscular Mycorrhizal Fungi (AMF) and Bradyrhizobium japonicum ( B. japonicum ) strains on yield and growth of drought stressed soybean (Giza 111) plants at early pod stage (50 days from sowing, R3) and seed development stage (90 days from sowing, R5). Results Highest plant biomass, leaf chlorophyll content, nodulation, and grain yield were observed in the unstressed plants as compared with water stressed-plants at R3 and R5 stages. At soil rhizosphere level, AMF and B. japonicum treatments improved bacterial counts and the activities of the enzymes (dehydrogenase and phosphatase) under well-watered and drought stress conditions. Irrespective of the drought effects, AMF and B. japonicum treatments improved the growth and yield of soybean under both drought (restrained irrigation) and adequately-watered conditions as compared with untreated plants. The current study revealed that AMF and B. japonicum improved catalase (CAT) and peroxidase (POD) in the seeds, and a reverse trend was observed in case of malonaldehyde (MDA) and proline under drought stress. The relative expression of the CAT and POD genes was up-regulated by the application of biofertilizers treatments under drought stress condition. Interestingly a reverse trend was observed in the case of the relative expression of the genes involved in the proline metabolism such as P5CS , P5CR , PDH, and P5CDH under the same conditions. The present study suggests that biofertilizers diminished the inhibitory effect of drought stress on cell development and resulted in a shorter time for DNA accumulation and the cycle of cell division. There were notable changes in the activities of enzymes involved in the secondary metabolism and expression levels of GmSPS1 , GmSuSy, and GmC-INV in the plants treated with biofertilizers and exposed to the drought stress at both R3 and R5 stages. These changes in the activities of secondary metabolism and their transcriptional levels caused by biofertilizers may contribute to increasing soybean tolerance to drought stress. Conclusions The results of this study suggest that application of biofertilizers to soybean plants is a promising approach to alleviate drought stress effects on growth performance of soybean plants. The integrated application of biofertilizers may help to obtain improved resilience of the agro ecosystems to adverse impacts of climate change and help to improve soil fertility and plant growth under drought stress.

Canopy chlorophyll content (CCC) is an important indicator for crop-growth monitoring and crop productivity estimation. The hybrid method, involving the PROSAIL radiative transfer model and machine learning algorithms, has been widely applied for crop CCC retrieval. However, PROSAIL’s homogeneous canopy hypothesis limits the ability to use the PROSAIL-based CCC estimation across different crops with a row structure. In addition to leaf area index (LAI), average leaf angle (ALA) is the most important canopy structure factor in the PROSAIL model. Under the same LAI, adjustment of the ALA can make a PROSAIL simulation obtain the same canopy gap as the heterogeneous canopy at a specific observation angle. Therefore, parameterization of an adjusted ALA (ALAadj) is an optimal choice to make the PROSAIL model suitable for specific row-planted crops. This paper attempted to improve PROSAIL-based CCC retrieval for different crops, using a random forest algorithm, by introducing the prior knowledge of crop-specific ALAadj. Based on the field reflectance spectrum at nadir, leaf area index, and leaf chlorophyll content, parameterization of the ALAadj in the PROSAIL model for wheat and soybean was carried out. An algorithm integrating the random forest and PROSAIL simulations with prior ALAadj information was developed for wheat and soybean CCC retrieval. Ground-measured CCC measurements were used to validate the CCC retrieved from canopy spectra. The results showed that the ALAadj values (62 degrees for wheat; 45 degrees for soybean) that were parameterized for the PROSAIL model demonstrated good discrimination between the two crops. The proposed algorithm improved the CCC retrieval accuracy for wheat and soybean, regardless of whether continuous visible to near-infrared spectra with 50 bands (RMSE from 39.9 to 32.9 μg cm−2; R2 from 0.67 to 0.76) or discrete spectra with 13 bands (RMSE from 43.9 to 33.7 μg cm−2; R2 from 0.63 to 0.74) and nine bands (RMSE from 45.1 to 37.0 μg cm−2; R2 from 0.61 to 0.71) were used. The proposed hybrid algorithm, based on PROSAIL simulations with ALAadj, has the potential for satellite-based CCC estimation across different crop types, and it also has a good reference value for the retrieval of other crop parameters.