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result(s) for
"level set segmentation"
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Two Automated Techniques for Carotid Lumen Diameter Measurement: Regional versus Boundary Approaches
by
Sharma, Aditya M.
,
SABA, LUCA
,
Rajan, Jeny
in
Aged
,
Algorithms
,
B-mode ultrasound; Boundary-based; Carotid artery; Classification; Level set segmentation; Lumen diameter; Region-based; Scale-space; Medicine (miscellaneous); Health Informatics; Health Information Management; Information Systems
2016
The degree of stenosis in the carotid artery can be predicted using automated carotid lumen diameter (LD) measured from B-mode ultrasound images. Systolic velocity-based methods for measurement of LD are subjective. With the advancement of high resolution imaging, image-based methods have started to emerge. However, they require robust image analysis for accurate LD measurement. This paper presents two different algorithms for automated segmentation of the lumen borders in carotid ultrasound images. Both algorithms are modeled as a two stage process. Stage one consists of a global-based model using scale-space framework for the extraction of the region of interest. This stage is common to both algorithms. Stage two is modeled using a local-based strategy that extracts the lumen interfaces. At this stage, the algorithm-1 is modeled as a region-based strategy using a classification framework, whereas the algorithm-2 is modeled as a boundary-based approach that uses the level set framework. Two sets of databases (DB), Japan DB (JDB) (202 patients, 404 images) and Hong Kong DB (HKDB) (50 patients, 300 images) were used in this study. Two trained neuroradiologists performed manual LD tracings. The mean automated LD measured was 6.35 ± 0.95 mm for JDB and 6.20 ± 1.35 mm for HKDB. The precision-of-merit was: 97.4 % and 98.0 % w.r.t to two manual tracings for JDB and 99.7 % and 97.9 % w.r.t to two manual tracings for HKDB. Statistical tests such as ANOVA, Chi-Squared, T-test, and Mann-Whitney test were conducted to show the stability and reliability of the automated techniques.
Journal Article
3D-MRI Brain Tumor Detection Model Using Modified Version of Level Set Segmentation Based on Dragonfly Algorithm
2020
Accurate brain tumor segmentation from 3D Magnetic Resonance Imaging (3D-MRI) is an important method for obtaining information required for diagnosis and disease therapy planning. Variation in the brain tumor’s size, structure, and form is one of the main challenges in tumor segmentation, and selecting the initial contour plays a significant role in reducing the segmentation error and the number of iterations in the level set method. To overcome this issue, this paper suggests a two-step dragonfly algorithm (DA) clustering technique to extract initial contour points accurately. The brain is extracted from the head in the preprocessing step, then tumor edges are extracted using the two-step DA, and these extracted edges are used as an initial contour for the MRI sequence. Lastly, the tumor region is extracted from all volume slices using a level set segmentation method. The results of applying the proposed technique on 3D-MRI images from the multimodal brain tumor segmentation challenge (BRATS) 2017 dataset show that the proposed method for brain tumor segmentation is comparable to the state-of-the-art methods.
Journal Article
Wildfire aerial thermal image segmentation using unsupervised methods: a multilayer level set approach
by
Bernardino, Alexandre
,
Ribeiro, Ricardo
,
Garcia, Tiago
in
data collection
,
Deep learning
,
fire fighting
2023
Background and aims: Infrared thermal images of a propagating wildfire taken by manned or unmanned aerial vehicles can help firefighting authorities with combat planning. Segmenting these images into regions of different fire temperatures is a necessary step to measure the fire perimeter and determine the location of the fire front.Methods: This work proposes a multilayer segmentation method based on level sets, which have the property of handling topology, making them suitable to segment images that contain scattered fire areas. The experimental results were compared using hand-drawn labels over a set of images provided by the Portuguese Air Force as ground truth. These labels were carefully drawn by the authors to ensure that they complied with the requirements indicated by the Portuguese National Authority for Emergency and Civil Protection. The proposed method was optimised to ensure contour smoothness and reliability, as well as reduce computation time.Key results: The proposed method can surpass other common unsupervised methods in terms of intersection over union, although it has not yet been able to perform real-time segmentation.Conclusions: Although falling out of use in relation to supervised and deep learning methods, unsupervised segmentation can still be very useful when annotated datasets are unavailable.
Journal Article
Computer-aided diagnosis applied to MRI images of brain tumor using cognition based modified level set and optimized ANN classifier
2020
MRI image segmentation and classification is one of the important tasks in medical image analysis and visualization, despite occurrence of noise makes it tough to segment the region of interest. In this paper, the MRI images are pre-processed and segmentation is carried out using modified Level set method for the tumor segmentation. Also, it is important to extract the useful features to predict the image class accurately. The proposed method operates Multi-Level wavelet decomposition features and for the wavelet coefficients modified chief descriptions like Grey Level Co-Occurrence Matrix (GLCM), Gabor and moment invariant features are extracted. The classification is carried out using the Adaptive Artificial Neural Network (AANN) methodology. In the adaptive ANN, the layer neurons are optimized using Whale Optimization Algorithm (WOA). The adaptive neural network optimizes the network structure to increase the classification accuracy and thus gives better classification results of tumors based on the segmented images. The proposed method will be executed in the working platform of MATLAB and the results are compared with the previous state of the art techniques. Finally, the proposed method results in classification accuracy of 98%.
Journal Article
Improved subcutaneous edema segmentation on abdominal CT using a generated adipose tissue density prior
2024
Purpose
Edema, or swelling, is a common symptom of kidney, heart, and liver disease. Volumetric edema measurement is potentially clinically useful. Edema can occur in various tissues. This work focuses on segmentation and volume measurement of one common site, subcutaneous adipose tissue.
Methods
The density distributions of edema and subcutaneous adipose tissue are represented as a two-class Gaussian mixture model (GMM). In previous work, edema regions were segmented by selecting voxels with density values within the edema density distribution. This work improves upon the prior work by generating an adipose tissue mask without edema through a conditional generative adversarial network. The density distribution of the generated mask was imported into a Chan-Vese level set framework. Edema and subcutaneous adipose tissue are separated by iteratively updating their respective density distributions.
Results
Validation results on 25 patients with edema showed that the segmentation accuracy significantly improved. Compared to GMM, the average Dice Similarity Coefficient increased from 56.0 to 61.7% (
p
<
0.05
) and the relative volume difference decreased from 36.5 to 30.2% (
p
<
0.05
).
Conclusion
The generated adipose tissue density prior improved edema segmentation accuracy. Accurate edema volume measurement may prove clinically useful.
Journal Article
Automated breast tumor detection and segmentation with a novel computational framework of whole ultrasound images
2018
Due to the low contrast and ambiguous boundaries of the tumors in breast ultrasound (BUS) images, it is still a challenging task to automatically segment the breast tumors from the ultrasound. In this paper, we proposed a novel computational framework that can detect and segment breast lesions fully automatic in the whole ultrasound images. This framework includes several key components: pre-processing, contour initialization, and tumor segmentation. In the pre-processing step, we applied non-local low-rank (NLLR) filter to reduce the speckle noise. In contour initialization step, we cascaded a two-step Otsu-based adaptive thresholding (OBAT) algorithm with morphologic operations to effectively locate the tumor regions and initialize the tumor contours. Finally, given the initial tumor contours, the improved Chan-Vese model based on the ratio of exponentially weighted averages (CV-ROEWA) method was utilized. This pipeline was tested on a set of 61 breast ultrasound (BUS) images with diagnosed tumors. The experimental results in clinical ultrasound images prove the high accuracy and robustness of the proposed framework, indicating its potential applications in clinical practice.
Journal Article
Offshore Oil Platform Detection in Polarimetric SAR Images Using Level Set Segmentation of Limited Initial Region and Convolutional Neural Network
2022
Offshore oil platforms are difficult to detect due to the complex sea state, the sparseness of target distribution, and the similarity of targets with ships. In this paper, we propose an oil platform detection method in polarimetric synthetic aperture radar (PolSAR) images using level set segmentation of a limited initial region and a convolutional neural network (CNN). Firstly, to reduce the interference of sea clutter, the offshore strong scattering targets were initially detected by the generalized optimization of polarimetric contrast enhancement (GOPCE) detector. Secondly, to accurately locate the contour of targets and eliminate false alarms, the coarse results were refined using an improved level set segmentation method. An algorithm for splitting and merging the smallest enclosing circle (SMSEC) was proposed to cover the coarse results and obtain the initial level set function. Finally, the LeNet-5 CNN model was used to classify the oil platforms and ships. Experimental results using multiple sets of polarimetric SAR data acquired by RADARSAT-2 show that the performance of the proposed method, including the detection rate, the false alarm rate, and the Intersection over Union (IOU) index between the extracted ROI and the ground truth, is better than the performance of a method that combines a GOPCE detector and a support vector machine classifier.
Journal Article
Diagnosis of diabetic retinopathy using multi level set segmentation algorithm with feature extraction using SVM with selective features
by
Kadry, Seifedine
,
Kandhasamy, J. Pradeep
,
Ramasamy, Lakshmana Kumar
in
Algorithms
,
Blindness
,
Clustering
2020
Diabetic retinopathy is a major cause of blindness in diabetic patients. It is an eye disease caused by diabetes mellitus which affects the retina. Recognition of the severity of this disease at early stage is a challenging factor for the ophthalmologists. In this article, a novel diagnosis system for identifying the severity of diabetic retinopathy is proposed using a multi level set segmentation algorithm and support vector machine with selective features along with genetic algorithm. The proposed system uses some mathematical morphological operations for clustering. After that the clusters are passed to the multi level set segmentation algorithm and some features are extracted using Local Binary Patterns as a texture descriptor for retinal images, color moments and statistical features such as mean, median etc. to detect the major regions of retina. Then the extracted features are given to the support vector machine classifier to classify the disease severity. This system was evaluated and compared using measures of sensitivity and specificity. We obtain sensitivity of 97.14%, specificity of 100% and accuracy of 99.3% on an average. From the seen results, it is observed that our proposed system is suited for the diagnosis of diabetic retinopathy at the early stage.
Journal Article
Sea-Crossing Bridge Detection in Polarimetric SAR Images Based on Windowed Level Set Segmentation and Polarization Parameter Discrimination
2022
As sea-crossing bridges are important hubs connecting separated land areas, their detection in SAR images is of great significance. However, under complex scenarios, the sea surface conditions, the distribution of coastal terrain morphologies, and the scattering components of different structures in the bridge area are very complex and diverse, which makes the accurate and robust detection of sea-crossing bridges difficult, including the sea–land segmentation and bridge feature extraction on which the detection depends. In this paper, we propose a polarimetric SAR image detection method for sea-crossing bridges based on windowed level set segmentation and polarization parameter discrimination. Firstly, the sea and land are segmented by a proposed windowed level set segmentation method, which replaces the construction of the level set segmentation energy function based on the isolated pixel distribution with a joint distribution of pixels in a certain window region. Secondly, water regions of interest are extracted by a proposed water region merging algorithm combining the distances of the water contour and polarization similarity parameter. Finally, the bridge regions of interest (ROIs) are extracted by merging close water contours, and the ROIs are discriminated by the polarimetric parameters of the polarization entropy and scattering angle. Experimental results using multiple AirSAR, RADARSAT-2, and TerraSAR-X quad-polarization SAR data from the coastal areas of San Francisco in the USA, Singapore, and Fuzhou, Fujian, and Zhanjiang, Guangdong, in China show that the proposed method can achieve 100% detection of sea-crossing bridges in different bands for different scenes, and the accuracy of the intersection of the ground-truth (IoG) index of bridge body recognition can reach more than 85%. The proposed method can improve the detection rate and reduce the false alarm rate compared with the traditional spatial-based method.
Journal Article
Shape–intensity prior level set combining probabilistic atlas and probability map constrains for automatic liver segmentation from abdominal CT images
2016
PurposePropose a fully automatic 3D segmentation framework to segment liver on challenging cases that contain the low contrast of adjacent organs and the presence of pathologies from abdominal CT images.MethodsFirst, all of the atlases are weighted in the selected training datasets by calculating the similarities between the atlases and the test image to dynamically generate a subject-specific probabilistic atlas for the test image. The most likely liver region of the test image is further determined based on the generated atlas. A rough segmentation is obtained by a maximum a posteriori classification of probability map, and the final liver segmentation is produced by a shape–intensity prior level set in the most likely liver region. Our method is evaluated and demonstrated on 25 test CT datasets from our partner site, and its results are compared with two state-of-the-art liver segmentation methods. Moreover, our performance results on 10 MICCAI test datasets are submitted to the organizers for comparison with the other automatic algorithms.ResultsUsing the 25 test CT datasets, average symmetric surface distance is 1.09±0.34 mm (range 0.62–2.12 mm), root mean square symmetric surface distance error is 1.72±0.46 mm (range 0.97–3.01 mm), and maximum symmetric surface distance error is 18.04±3.51 mm (range 12.73–26.67 mm) by our method. Our method on 10 MICCAI test data sets ranks 10th in all the 47 automatic algorithms on the site as of July 2015. Quantitative results, as well as qualitative comparisons of segmentations, indicate that our method is a promising tool to improve the efficiency of both techniques.ConclusionThe applicability of the proposed method to some challenging clinical problems and the segmentation of the liver are demonstrated with good results on both quantitative and qualitative experimentations. This study suggests that the proposed framework can be good enough to replace the time-consuming and tedious slice-by-slice manual segmentation approach.
Journal Article