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result(s) for
"logistic regression"
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A comparison of logistic regression methods for Ising model estimation
by
Brusco, Michael J.
,
Watts, Ashley L.
,
Steinley, Douglas
in
Behavioral Science and Psychology
,
Cognitive Psychology
,
Psychology
2023
The Ising model has received significant attention in network psychometrics during the past decade. A popular estimation procedure is IsingFit, which uses nodewise
l
1
-regularized logistic regression along with the extended Bayesian information criterion to establish the edge weights for the network. In this paper, we report the results of a simulation study comparing IsingFit to two alternative approaches: (1) a nonregularized nodewise stepwise logistic regression method, and (2) a recently proposed global
l
1
-regularized logistic regression method that estimates all edge weights in a single stage, thus circumventing the need for nodewise estimation. MATLAB scripts for the methods are provided as supplemental material. The global
l
1
-regularized logistic regression method generally provided greater accuracy and sensitivity than IsingFit, at the expense of lower specificity and much greater computation time. The stepwise approach showed considerable promise. Relative to the
l
1
-regularized approaches, the stepwise method provided better average specificity for all experimental conditions, as well as comparable accuracy and sensitivity at the largest sample size.
Journal Article
A systematic review of landslide probability mapping using logistic regression
by
Lewis, H. G.
,
Atkinson, P. M.
,
Budimir, M. E. A.
in
Agriculture
,
Civil Engineering
,
Confidence intervals
2015
Logistic regression studies which assess landslide susceptibility are widely available in the literature. However, a global review of these studies to synthesise and compare the results does not exist. There are currently no guidelines for the selection of covariates to be used in logistic regression analysis, and as such, the covariates selected vary widely between studies. An inventory of significant covariates associated with landsliding produced from the full set of such studies globally would be a useful aid to the selection of covariates in future logistic regression studies. Thus, studies using logistic regression for landslide susceptibility estimation published in the literature were collated, and a database was created of the significant factors affecting the generation of landslides. The database records the paper the data were taken from, the year of publication, the approximate longitude and latitude of the study area, the trigger method (where appropriate) and the most dominant type of landslides occurring in the study area. The significant and non-significant (at the 95 % confidence level) covariates were recorded, as well as their coefficient, statistical significance and unit of measurement. The most common statistically significant covariate used in landslide logistic regression was slope, followed by aspect. The significant covariates related to landsliding varied for earthquake-induced landslides compared to rainfall-induced landslides, and between landslide type. More importantly, the full range of covariates used was identified along with their frequencies of inclusion. The analysis showed that there needs to be more clarity and consistency in the methodology for selecting covariates for logistic regression analysis and in the metrics included when presenting the results. Several recommendations for future studies were given.
Journal Article
Determinants of Supply Chain Engagement in Carbon Management
by
Karttunen, Elina
,
Kähkönen, Anni-Kaisa
,
Lintukangas, Katrina
in
Business
,
Business ethics
,
Carbon
2023
To fight climate change, firms must adopt effective and feasible carbon management practices that promote collaboration within supply chains. Engaging suppliers and customers on carbon management reduces vulnerability to climate-related risks and increases resilience and adaptability in supply chains. Therefore, it is important to understand the motives and preconditions for pursuing supply chain engagement from companies that actively engage with supply chain members in carbon management. In this study, a relational view is applied to operationalize the supply chain engagement concept to reflect the different levels of supplier and customer engagement. Based on a sample of 345 companies from the Carbon Disclosure Project’s supply chain program, the determinants of engagement were hypothesized and tested using multinomial and ordinal logistic estimation methods. The results indicate that companies that integrate climate change into their strategies and are involved in developing environmental public policy are driven by moral motives to engage their suppliers and customers in carbon management. All these factors make a stronger impact on supplier engagement than on customer engagement. Moreover, companies operating in greenhouse gas-intensive industries are driven by instrumental motives to engage their suppliers and customers because increasing greenhouse gas intensity positively influences engagement level. Company profitability appears to increase supplier engagement, but not customer engagement. Interestingly, operating in a country with stringent environmental regulations does not appear to influence supply chain engagement. By utilizing relational capabilities and collaboration, buyers can increase their suppliers’ engagement to disclose emissions, which ultimately will lead to better results in carbon management.
Journal Article
A Trust-Based Security Model to Detect Misbehaving Nodes in Internet of Things (IoT) Environment using Logistic Regression
2021
Ensuring authentication in the Internet of Things (IoT) environment is a crucial task because of its unique characteristics which include sensing, intelligence, large scale, selfconfiguring, connectivity, heterogeneity, open and dynamic environment. Besides, every object in the IoT environment should trust other devices with no recommendation or prior knowledge for any network operations. Hence, those characteristics and blindness in communication make security violations in the form of various attacks. Therefore, a trustbased solution is necessary for ensuring security in the IoT environment. Trust is considered as a computational measure represented through a relationship between trustor and trustee, explained in a particular context valued through trust metrics and evaluated by a trust mechanism. The proposed logistic regression-based trust model provides an efficient way to identify and isolate the misbehaving nodes in the RPL (Routing Protocol for Low Power Lossy Networks) based IoT network. It is one of the popularly used routing protocols in IoT, that builds a path especially for the constrained nodes in IoT environments. However, it is vulnerable to many attacks. The proposed model classifies and predicts the node’s behavior (trusted or malicious). This model uses the logistic regression model to predict the node’s behavior based on the integrated trust value which is computed from the direct trust, reputation score, and experience trust. It is primarily designed to address the black hole attack in the IoT environment. The mathematical analysis shows the possibility of the proposed work and the simulation results show the proposed model is better than the existing similar work.
Journal Article
Random forests for the analysis of matched case–control studies
by
Berger, Moritz
,
Klug, Stefanie J.
,
Schauberger, Gunther
in
Algorithms
,
Bioinformatics
,
Biomedical and Life Sciences
2024
Background
Conditional logistic regression trees have been proposed as a flexible alternative to the standard method of conditional logistic regression for the analysis of matched case–control studies. While they allow to avoid the strict assumption of linearity and automatically incorporate interactions, conditional logistic regression trees may suffer from a relatively high variability. Further machine learning methods for the analysis of matched case–control studies are missing because conventional machine learning methods cannot handle the matched structure of the data.
Results
A random forest method for the analysis of matched case–control studies based on conditional logistic regression trees is proposed, which overcomes the issue of high variability. It provides an accurate estimation of exposure effects while being more flexible in the functional form of covariate effects. The efficacy of the method is illustrated in a simulation study and within an application to real-world data from a matched case–control study on the effect of regular participation in cervical cancer screening on the development of cervical cancer.
Conclusions
The proposed random forest method is a promising add-on to the toolbox for the analysis of matched case–control studies and addresses the need for machine-learning methods in this field. It provides a more flexible approach compared to the standard method of conditional logistic regression, but also compared to conditional logistic regression trees. It allows for non-linearity and the automatic inclusion of interaction effects and is suitable both for exploratory and explanatory analyses.
Journal Article
Who lies? A large-scale reanalysis linking basic personality traits to unethical decision making
by
Morten Moshagen
,
Isabel Thielmann
,
Daniel W. Heck
in
Analysis
,
Cheating
,
cheating; dishonesty; logistic regression; HEXACO Honesty-Humility; Big FiveNAKeywords
2018
Previous research has established that higher levels of trait Honesty-Humility (HH) are associated with less dishonest behavior in cheating paradigms. However, only imprecise effect size estimates of this HH-cheating link are available. Moreover, evidence is inconclusive on whether other basic personality traits from the HEXACO or Big Five models are associated with unethical decision making and whether such effects have incremental validity beyond HH. We address these issues in a highly powered reanalysis of 16 studies assessing dishonest behavior in an incentivized, one-shot cheating paradigm (N = 5,002). For this purpose, we rely on a newly developed logistic regression approach for the analysis of nested data in cheating paradigms. We also test theoretically derived interactions of HH with other basic personality traits (i.e., Emotionality and Conscientiousness) and situational factors (i.e., the baseline probability of observing a favorable outcome) as well as the incremental validity of HH over demographic characteristics. The results show a medium to large effect of HH (odds ratio = 0.53), which was independent of other personality, situational, or demographic variables. Only one other trait (Big Five Agreeableness) was associated with unethical decision making, although it failed to show any incremental validity beyond HH.
Journal Article
pyPheWAS: A Phenome-Disease Association Tool for Electronic Medical Record Analysis
by
Nguyen, Tin Q
,
Bermudez, Camilo
,
Cutting, Laurie E
in
Associations
,
Case studies
,
Developmental disabilities
2022
Along with the increasing availability of electronic medical record (EMR) data, phenome-wide association studies (PheWAS) and phenome-disease association studies (PheDAS) have become a prominent, first-line method of analysis for uncovering the secrets of EMR. Despite this recent growth, there is a lack of approachable software tools for conducting these analyses on large-scale EMR cohorts. In this article, we introduce pyPheWAS, an open-source python package for conducting PheDAS and related analyses. This toolkit includes 1) data preparation, such as cohort censoring and age-matching; 2) traditional PheDAS analysis of ICD-9 and ICD-10 billing codes; 3) PheDAS analysis applied to a novel EMR phenotype mapping: current procedural terminology (CPT) codes; and 4) novelty analysis of significant disease-phenotype associations found through PheDAS. The pyPheWAS toolkit is approachable and comprehensive, encapsulating data prep through result visualization all within a simple command-line interface. The toolkit is designed for the ever-growing scale of available EMR data, with the ability to analyze cohorts of 100,000 + patients in less than 2 h. Through a case study of Down Syndrome and other intellectual developmental disabilities, we demonstrate the ability of pyPheWAS to discover both known and potentially novel disease-phenotype associations across different experiment designs and disease groups. The software and user documentation are available in open source at https://github.com/MASILab/pyPheWAS.
Journal Article
Landslide susceptibility analysis in the Hoa Binh province of Vietnam using statistical index and logistic regression
by
Lofman, Owe
,
Bui, Dieu Tien
,
Revhaug, Inge
in
Civil Engineering
,
Curvature
,
Disaster prevention
2011
The purpose of this study is to evaluate and compare the results of applying the statistical index and the logistic regression methods for estimating landslide susceptibility in the Hoa Binh province of Vietnam. In order to do this, first, a landslide inventory map was constructed mainly based on investigated landslide locations from three projects conducted over the last 10 years. In addition, some recent landslide locations were identified from SPOT satellite images, fieldwork, and literature. Secondly, ten influencing factors for landslide occurrence were utilized. The slope gradient map, the slope curvature map, and the slope aspect map were derived from a digital elevation model (DEM) with resolution 20 × 20 m. The DEM was generated from topographic maps at a scale of 1:25,000. The lithology map and the distance to faults map were extracted from Geological and Mineral Resources maps. The soil type and the land use maps were extracted from National Pedology maps and National Land Use Status maps, respectively. Distance to rivers and distance to roads were computed based on river and road networks from topographic maps. In addition, a rainfall map was included in the models. Actual landslide locations were used to verify and to compare the results of landslide susceptibility maps. The accuracy of the results was evaluated by ROC analysis. The area under the curve (AUC) for the statistical index model was 0.946 and for the logistic regression model, 0.950, indicating an almost equal predicting capacity.
Journal Article
Binary classification with fuzzy logistic regression under class imbalance and complete separation in clinical studies
by
Charizanos, Georgios
,
Demirhan, Haydar
,
İçen, Duygu
in
Accuracy
,
Algorithms
,
Binary classification
2024
Background
In binary classification for clinical studies, an imbalanced distribution of cases to classes and an extreme association level between the binary dependent variable and a subset of independent variables can create significant classification problems. These crucial issues, namely class imbalance and complete separation, lead to classification inaccuracy and biased results in clinical studies.
Method
To deal with class imbalance and complete separation problems, we propose using a fuzzy logistic regression framework for binary classification. Fuzzy logistic regression incorporates combinations of triangular fuzzy numbers for the coefficients, inputs, and outputs and produces crisp classification results. The fuzzy logistic regression framework shows strong classification performance due to fuzzy logic’s better handling of imbalance and separation issues. Hence, classification accuracy is improved, mitigating the risk of misclassified conditions and biased insights for clinical study patients.
Results
The performance of the fuzzy logistic regression model is assessed on twelve binary classification problems with clinical datasets. The model has consistently high sensitivity, specificity, F1, precision, and Mathew’s correlation coefficient scores across all clinical datasets. There is no evidence of impact from the imbalance or separation that exists in the datasets. Furthermore, we compare the fuzzy logistic regression classification performance against two versions of classical logistic regression and six different benchmark sources in the literature. These six sources provide a total of ten different proposed methodologies, and the comparison occurs by calculating the same set of classification performance scores for each method. Either imbalance or separation impacts seven out of ten methodologies. The remaining three produce better classification performance in their respective clinical studies. However, these are all outperformed by the fuzzy logistic regression framework.
Conclusion
Fuzzy logistic regression showcases strong performance against imbalance and separation, providing accurate predictions and, hence, informative insights for classifying patients in clinical studies.
Journal Article
Performance of frequency ratio and logistic regression model in creating GIS based landslides susceptibility map at Lompobattang Mountain, Indonesia
2016
The purposes of this study is to create a landslide susceptibility map (LSM) for Lompobattang Mountain area in Indonesia. The foot of the Lompobattang Mountain area suffered flash flood and landslides in 2006, which led to significant adverse impact on the nearby settlements. There were 158 identified landslides covering a total area of 3.44 km
2
. Landslide inventory data were collected using google earth image interpretations. The landslide inventories were prepared out of the past landslide events, and future landslide occurrence was predicted by correlating landslide causal factors. In this study landslide inventories were divided into landslide data for training and landslide data for validation. The LSM was prepared by Frequency Ratio (FR) and Logistic Regression (LR) statistical methods. Lithology, distance from the road, distance from the river, distance from the fault, land use, curvature, aspect, and slope degree were used as conditioning parameters. Area under the curve (AUC) of the Receiver Operating Characteristic (ROC) was used to check the performance of the models. In the analysis, the FR model results in 85.8 % accuracy in the AUC success rate while the LR model was found to have 86.9 % accuracy. However, the accuracy of both these models in AUC predictive rate is the same at around 85.1 %. The LR model is 6.34 % higher than the FR model in comparison to its accuracy for ratio of landslide validation. The landslide susceptibility map consist of the predicted landslide area, hence it can be used to reduce the potential hazard associated with the landslides in this study area.
Journal Article