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Human dire need for environmental sustainability have triggered researchers to seek for organic substrates as an alternative to synthetic fertilizers in order to enhance bioremediation. Presently, nitrogen-rich organic substrate not only proffered the solution but also have proven useful in enhancing the rate of bioremediation. Animal manure is a nitrogen-rich organic substrate which has been found very effective for stimulating plant growth. Some of the animal manure used by researchers are poultry droppings, cow dung, goat manure, and pig manure. In all the papers reviewed, it was gathered that animal manure enhances bioremediation by providing nutrients favoring microbial growth and activities responsible hydrocarbon degradation. However, of the four commonly used animal manure, poultry droppings was severally reported to be a better biostimulant. Also, animal manure when sun-dried and pulverized yielded better results. It was observed that animal manure serves as substrates for earthworms which further accelerates the potential of the earthworms to remediate the soil. Also, the pollution of soil by crude oil causes a surge in its carbon content which may slow down microbial growth and activities. Thorough review of literatures, however, indicates that animal manure is capable of providing appropriate nutrient concentrations to offset such imbalance. Studies continue to lay credence to the efficacy of animal manure in enhancing microbial growth and activities responsible for the biodegradation of hydrocarbons contained in crude oil. Furthermore, the co-application of animal manure with other bioremediation strategies, such as phytoremediation and vermiremediation, should be combined for effective bioremediation of oil-contaminated environment.

Changes in physicochemical characteristics, chemical structures and maturity of swine, cattle and chicken manures and composts during 70-day composting without addition of bulking agents were investigated. Physicochemical characteristics were measured by routine analyses and chemical structures by solid-state 13C NMR and FT-IR. Three manures were of distinct properties. Their changes in physicochemical characteristics, chemical structures, and maturity were different not only from each other but also from those with addition of bulking agents during composting. Aromaticity in chicken manure composts decreased at first, and then increased whereas that in cattle and swine manure composts increased. Enhanced ammonia volatilization occurred without addition of bulking agents. NMR structural information indicated that cattle and chicken composts were relatively stable at day 36 and 56, respectively, but swine manure composts were not mature up to day 70. Finally, the days required for three manures to reach the threshold values of different maturity indices were different.

The pollution of antibiotic resistance genes (ARGs) in livestock farms is a problem which need to be paid more attention to, due to the severe resistance dissemination and the further human health risk. In this study, all the relevant exposure matrices (manure, soil and water) of sixteen animal farms in Southeastern China were sampled to determine twenty-two ARGs conferring resistance to five major classes of antibiotics including tetracyclines, sulfonamides, quinolones, aminoglycosides, and macrolides. The results showed that the spread property of sul genes was most extensive and strong, followed by tet and erm genes. The abundance of tet genes expressing ribosomal protection proteins (tetM, tetO, tetQ, tetT and tetW) was higher than that expressing efflux pump proteins (tetA, tetC, tetE and tetG) in each type of samples. The high abundance and frequency of ermB gene in the matrices should be paid more attention, because macrolides is a major medicine for human use. For manures, it was found that the similar ARGs distribution rules were existing in poultry manure or porcine manure samples, despite of the different origins of these two types of livestock farms. Meanwhile, it was interesting that the distribution rule of tet genes in animal manure was nearly the same as all the ARGs. For soils, the result of nonmetric multi-dimensional scaling (NMDS) analysis showed that the pollution of ARGs in the soils fertilized by poultry and cattle manures were more substantial in northern Jiangsu, but no significant ARGs diversity was observed among porcine manured soils of five different regions. Furthermore, most ARGs showed significant positive relationships with environmental variables such as concentration of sulfonamides, tetracyclines, Cu, Zn and total organic carbon (TOC). The pollution profile and characteristics of so many ARGs in livestock farms can provide significative foundation for the regulation and legislation of antibiotics in China.

A feasible and rapid analysis for the simultaneous determination of sulfonamides (SAs), tetracyclines (TCs), fluoroquinolones (FQs), macrolides (MACs) and nitrofurans (NFs) in livestock manure and soils was established by solid-phase extraction (SPE)-ultra-performance liquid chromatography (UPLC)-tandem mass spectrometry (MS/MS). A total of 32 manure and 17 amended soil samples from the Liaoning and Tianjin areas in Northern China were collected for analysis. The largest detected frequencies and concentrations in manure samples were those of TCs (3326.6 ± 12,302.6 μg/kg), followed by FQs (411.3 ± 1453.4 μg/kg), SAs (170.6 ± 1060.2 μg/kg), NFs (85.1 ± 158.1 μg/kg), and MACs (1.4 ± 4.8 μg/kg). In general, veterinary antibiotics (VAs) were detected with higher concentrations in swine and chicken manure than in cattle manure, reflecting the heavy usage of VAs in swine and chicken husbandry in the studied area. Furthermore, higher residues of antibiotics were found in piglet and fattening swine manure than in sow manure. In addition, TCs were the most frequently (100 %) detected antibiotics in amended soil with higher concentrations (up to 10,967.1 μg/kg) than any other VAs. The attenuation of SAs was more obvious than TCs in amended soil after fertilization, which can most likely be attributed to the stronger sorption of TCs than SAs to soil organic matter through cation exchange. This study illustrated the prevalence of TCs detected in both animal manure and fertilized agricultural soils in Northern China, which may increase the risk to human health through the food chain. Thus, TCs should be given more attention in the management of veterinary usage in livestock husbandry.

Winter manure application elevates nutrient losses and impairment of water quality as compared to manure applications in other seasons. In conjunction with reviewing global distribution of animal densities, we reviewed worldwide mandatory regulations and voluntary guidelines on efforts to reduce off-site nutrient losses associated with winter manure applications. Most of the developed countries implement regulations or guidelines to restrict winter manure application, which range from a regulative ban to guidelines based upon weather and field management conditions. In contrast, developing countries lack such official directives, despite an increasing animal production industry and concern over water quality. An analysis of five case studies reveals that directives are derived from a common rationale to reduce off-site manure nutrient losses, but they are also affected by local socio-economic and biophysical considerations. Successful programs combine site-specific management strategies along with expansion of manure storage to offer farmers greater flexibility in winter manure management.

In order to maintain high yields and protect the environment, the replacement of chemical fertilizers with organic ones has received increasing attention in recent years. A 2-year field experiment (2015-2016) was carried out to assess the effects of substituting equal amounts of mineral fertilizer with organic manure on the yield, dry matter (DM), and nitrogen (N) uptake of spring maize (Zea mays L.) and on the mineral N (Nmin) distribution in the soil profile. The treatments included chemical fertilizer; different amounts of maize straw, cow manure, and chicken manure; and an unfertilized control (CK). Compared with the chemical fertilizer treatments, equal amounts of substitutions with cow manure or chicken manure increased production, and a 25% nutrient substitution resulted in the best yield increase. Straw return had no effect on maize production, and 100% straw return resulted in reduced production. The N accumulation and DM content both exhibited a slow-fast-slow growth trend throughout the various growth stages, and the average N uptake and DM accumulation in response to the treatments followed the order of chicken manure > cow manure > chemical fertilizer > straw return > CK. The Nmin content in the profile not only increased as the Nmin application rate increased but also showed greater increases at certain depths than at the surface, indicating that excessive N led to leaching. These results suggest that an appropriate proportion of organic substitution not only provides enough nutrients but also improves the soil environment and leads to increased yields. This technique represents a practical method of continuously increasing production and reducing the risk of N leaching.

Animal manures are commonly used to enhance soil fertility, but there are growing concerns over the impact of this practice on the development and dissemination of antibiotic resistance. The aim of this field study was to determine the effect of annual dairy manure applications on the occurrence and abundance of antibiotic resistance genes (ARGs) in an agricultural soil during four years of crop production. Treatments included (i) control (no fertilizer or manure), (ii) inorganic fertilizer and (iii) dairy manure at three application rates. Quantitative PCR was used to determine absolute (per g dry soil) and relative (per 16S rRNA gene) abundances of ARGs in DNA extracted from soils. Six ARGs and one class 1 integron were targeted. This study found that (i) manure application increases ARG abundances above background soil levels; (ii) the higher the manure application rate, the higher the ARG abundance in soil; (iii) the amount of manure applied is more important than reoccurring annual applications of the same amount of manure; (iv) absolute abundance and occurrence of ARGs decreases with increasing soil depth, but relative abundances remained constant. This study demonstrated that dairy manure applications to soil significantly increase the abundance of clinically relevant ARGs when compared to control and inorganic fertilized plots.

Background and aims Biochar has attracted research interest due to its ability to increase the soil carbon pool and improve crop productivity. The objective of this study was to evaluate the metal immobilizing impact of chicken manure- and green waste-derived biochars, and their effectiveness in promoting plant growth. Methods The immobilization and phytoavailability of Cd, Cu and Pb was examined using naturally contaminated shooting range and spiked soils. Biochar samples prepared from chicken manure and green waste were used as soil amendments. Results Application of biochar significantly reduced NH4NO3 extractable Cd, Cu and Pb concentrations of soils, indicating the immobilization of these metals. Chicken manure-derived biochar increased plant dry biomass by 353 and 572% for shoot and root, respectively with 1% of biochar addition. This might be attributed to reduced toxicity of metals and increased availability of nutrients such as P and K. Both biochars significantly reduced Cd, Cu and Pb accumulation by Indian mustard (Brassica juncea), and the reduction increased with increasing amount of biochar application except Cu concentration. Metal sequential fractionation data indicated that biochar treatments substantially modified the partitioning of Cd, Cu and Pb from the easily exchangeable phase to less bioavailable organic bound fraction. Conclusions The results clearly showed that biochar application was effective in metal immobilization, thereby reducing the bioavailability and phytotoxicity of heavy metals.

The increasing prevalence of antibiotic-resistant bacteria is a global threat to public health. Agricultural use of antibiotics is believed to contribute to the spread of antibiotic resistance, but the mechanisms by which many agricultural practices influence resistance remain obscure. Although manure from dairy farms is a common soil amendment in crop production, its impact on the soil microbiome and resistome is not known. To gain insight into this impact, we cultured bacteria from soil before and at 10 time points after application of manure from cows that had not received antibiotic treatment. Soil treated with manure contained a higher abundance of β-lactam–resistant bacteria than soil treated with inorganic fertilizer. Functional metagenomics identified β-lactam–resistance genes in treated and untreated soil, and indicated that the higher frequency of resistant bacteria in manure-amended soil was attributable to enrichment of resident soil bacteria that harbor β-lactamases. Quantitative PCR indicated that manure treatment enriched the bla CEP₋₀₄ gene, which is highly similar (96%) to a gene found previously in a Pseudomonas sp. Analysis of 16S rRNA genes indicated that the abundance of Pseudomonas spp. increased in manure-amended soil. Populations of other soil bacteria that commonly harbor β-lactamases, including Janthinobacterium sp. and Psychrobacter pulmonis , also increased in response to manure treatment. These results indicate that manure amendment induced a bloom of certain antibiotic-resistant bacteria in soil that was independent of antibiotic exposure of the cows from which the manure was derived. Our data illustrate the unintended consequences that can result from agricultural practices, and demonstrate the need for empirical analysis of the agroecosystem. Significance The increasing prevalence of antibiotic-resistant bacteria is one of the most serious threats to public health in the 21st century. One route by which resistance genes enter the food system is through amendment of soils with manure from antibiotic-treated animals, which are considered a reservoir of such genes. Previous studies have associated application of pig manure with the dispersal of sulfonamide-resistance genes to soil bacteria. In this study, we found that dairy cow manure amendment enhanced the proliferation of resident antibiotic-resistant bacteria and genes encoding β-lactamases in soil even though the cows from which the manure was derived had not been treated with antibiotics. Our findings provide previously unidentified insight into the mechanism by which amendment with manure enriches antibiotic-resistant bacteria in soil.

Nowadays, veterinary drug application has become an integral practice in livestock farming. Veterinary antibiotics (VAs) are administered onto animals for therapeutic use; meanwhile, in some countries, they are used for growth promotion. To indicate the level of VAs use in livestock breeding in two countries, Albania and Kosovo, their presence was studied in the animal manure. In total, 38 manure samples, 22 from Kosovo and 16 samples from Albania, belonging to cattle, pig, and poultry, were collected and investigated for the presence of VAs. Seven VAs and 2 metabolites, from the groups of sulfonamides and tetracyclines, were identified by ultra-high pressure liquid chromatography coupled with tandem mass spectrometry (UHPLC-MS/MS). The detected antibiotics were sulfadiazine (SDZ), sulfathiazole (STZ), sulfamethazine (SMZ), oxytetracycline (OTC), tetracycline (TC), chlortetracycline (TC), and doxycycline (DOY). VAs were detected in 27% and 31.2% of the manure samples, from Kosovo and Albania, respectively, and the levels ranged from 0.04 to 10.1 mg kg −1 . VAs were widely detected (100%) in poultry manure from Kosovo, as well as poultry manure from Albania. The contamination rate ranged from pig manure (25%) to cow manure (66.6%). Sulfonamides were the most commonly detected VAs with maximum concentration of sulfadiazine (10.1 mg kg −1 ) in poultry manure. Tetracyclines were most widely detected in poultry manure, as well as other animal manures. When it comes to the comparison between the two countries, VAs residues are more frequent per analyzed sample and higher in concentrations in the manure samples from Albania. Therefore, an environmental impact of VAs on both countries may be expected. These results indicate that VAs may enter the local ecosystem through manure application to agriculture and potentially may bring ecological risks.