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Terrestrial ecosystems worldwide are receiving increasing amounts of biologically reactive nitrogen (N) as a consequence of anthropogenic activities. This intended or unintended fertilization can have a wide‐range of impacts on biotic communities and hence on soil respiration. Reduction in below‐ground carbon (C) allocation induced by high N availability has been assumed to be a major mechanism determining the effects of N enrichment on soil respiration. In addition to increasing available N, however, N enrichment causes soil acidification, which may also affect root and microbial activities. The relative importance of increased N availability vs. soil acidification on soil respiration in natural ecosystems experiencing N enrichment is unclear. We conducted a 12‐year N enrichment experiment and a 4‐year complementary acid addition experiment in a semi‐arid Inner Mongolian grassland. We found that N enrichment had contrasting effects on root and microbial respiration. N enrichment significantly increased root biomass, root N content and specific root respiration, thereby promoting root respiration. In contrast, N enrichment significantly suppressed microbial respiration likely by reducing total microbial biomass and changing the microbial community composition. The effect on root activities was due to both soil acidity and increased available N, while the effect on microbes primarily stemmed from soil acidity, which was further confirmed by results from the acid addition experiment. Our results indicate that soil acidification exerts a greater control than soil N availability on soil respiration in grasslands experiencing long‐term N enrichment. These findings suggest that N‐induced soil acidification should be included in predicting terrestrial ecosystem C balance under future N deposition scenarios.

The revolution in microbiota research over the past decade has provided invaluable knowledge about the function of the microbial species that inhabit the human body. It has become widely accepted that these microorganisms, collectively called ‘the microbiota’, engage in networks of interactions with each other and with the host that aim to benefit both the microbial members and the mammalian members of this unique ecosystem. The lungs, previously thought to be sterile, are now known to harbor a unique microbiota and, additionally, to be influenced by microbial signals from distal body sites, such as the intestine. Here we review the role of the lung and gut microbiotas in respiratory health and disease and highlight the main pathways of communication that underlie the gut–lung axis. Marsland and colleagues review the role of the lung and gut microbiotas in respiratory health and disease.

Bacteria power their energy metabolism using membrane-bound respiratory enzymes that capture chemical energy and transduce it by pumping protons or Na+ ions across their cell membranes. Recent breakthroughs in molecular bioenergetics have elucidated the architecture and function of many bacterial respiratory enzymes, although key mechanistic principles remain debated. In this Review, we present an overview of the structure, function and bioenergetic principles of modular bacterial respiratory chains and discuss their differences from the eukaryotic counterparts. We also discuss bacterial supercomplexes, which provide central energy transduction systems in several bacteria, including important pathogens, and which could open up possible avenues for treatment of disease.Bacteria have much more diverse and versatile respiratory chains than eukaryotes, enabling adaption to different environmental conditions. In this Review, Kaila and Wikström discuss the architecture, function and bioenergetics of modular bacterial respiratory chains and supercomplexes.

The global decline in biodiversity has generated concern over the consequences for ecosystem functioning and services. Although ecosystem functions driven by soil microorganisms such as plant productivity, decomposition, and nutrient cycling are of particular importance, interrelationships between plant diversity and soil microorganisms are poorly understood. We analyzed the response of soil microorganisms to variations in plant species richness (1–60) and plant functional group richness (1–4) in an experimental grassland system over a period of six years. Major abiotic and biotic factors were considered for exploring the mechanisms responsible for diversity effects. Further, microbial growth characteristics were assessed following the addition of macronutrients. Effects of plant diversity on soil microorganisms were most pronounced in the most diverse plant communities though differences only became established after a time lag of four years. Differences in microbial growth characteristics indicate successional changes from a disturbed (zymogeneous) to an established (autochthonous) microbial community four years after establishment of the experiment. Supporting the singular hypothesis for plant diversity, the results suggest that plant species are unique, each contributing to the functioning of the belowground system. The results reinforce the need for long-term biodiversity experiments to fully appreciate consequences of current biodiversity loss for ecosystem functioning.

During the past century, systematic wildfire suppression has decreased fire frequency and increased fire severity in the western United States of America. While this has resulted in large ecological changes aboveground such as altered tree species composition and increased forest density, little is known about the long-term, belowground implications of altered, ecologically novel, fire regimes, especially on soil biological processes. To better understand the long-term implications of ecologically novel, high-severity fire, we used a 44-yr highseverity fire chronosequence in the Sierra Nevada where forests were historically adapted to frequent, low-severity fire, but were fire suppressed for at least 70 yr. High-severity fire in the Sierra Nevada resulted in a long-term (44 +yr) decrease (>50%, P < 0.05) in soil extracellular enzyme activities, basal microbial respiration (56–72%, P < 0.05), and organic carbon (>50%, P < 0.05) in the upper 5 cm compared to sites that had not been burned for at least 115 yr. However, nitrogen (N) processes were only affected in the most recent fire site (4 yr post-fire). Net nitrification increased by over 600% in the most recent fire site (P < 0.001), but returned to similar levels as the unburned control in the 13-yr site. Contrary to previous studies, we did not find a consistent effect of plant cover type on soil biogeochemical processes in mid-successional (10–50 yr) forest soils. Rather, the 44-yr reduction in soil organic carbon (C) quantity correlated positively with dampened C cycling processes. Our results show the drastic and long-term implication of ecologically novel, high-severity fire on soil biogeochemistry and underscore the need for long-term fire ecological experiments.

The role of soil organic C (SOC) quality affecting microbial community composition and function under biochar application is poorly understood. We investigated the relationship between the pool size and chemical composition of SOC; composition of main microbial groups; enzyme activities involved in C, N, and P cycling; and soil respiration in a rice paddy amended with biochar for 20 months in a laboratory experiment at 15, 25, and 35 °C. Soil labile and recalcitrant organic C pools were determined by a two-step sulfuric acid (H2SO4) hydrolysis method. The chemical composition of SOC was determined with 13C-nuclear magnetic resonance spectroscopy. The biochar amendment at 20 and 40 t ha−1 significantly decreased the soil labile C pool I (extracted by 5 N H2SO4), alkyl, and carbonyl C contents and increased the recalcitrant C pool (acid-resistant) and aromatic C contents and the aromatic C to O-alkyl C ratio. The phospholipid-fatty acid concentrations and soil enzyme activities were unchanged by biochar application at 10 and 20 t ha−1, but both were increased at 40 t ha−1. Biochar increased the ratio of gram-positive (G+) to gram-negative (G−) bacteria and decreased that of fungi to bacteria. The recalcitrant C pool and aromatic C contents were positively correlated to the G+ bacteria abundance and were important factors in shaping composition of the main microbial groups and improving enzyme activities. Biochar application at 40 t ha−1 lowered soil respiration rates at 15 and 25 °C by decreasing labile C pool and increasing C recalcitrancy while increased temperature sensitivities of soil respiration at 25/15 °C and 35/25 °C by stimulating microbial abundance and enzyme activities. Together, our results suggest that biochar soil amendment shifted microbial community composition and function through influencing the composition of SOC.

The use of microbial fuel cells to generate electrical current is increasingly being seen as a viable source of renewable energy production. In this Progress article, Bruce Logan highlights recent advances in our understanding of the mechanisms used by exoelectrogenic bacteria to generate electrical current and the important factors to consider in microbial fuel cell design. There has been an increase in recent years in the number of reports of microorganisms that can generate electrical current in microbial fuel cells. Although many new strains have been identified, few strains individually produce power densities as high as strains from mixed communities. Enriched anodic biofilms have generated power densities as high as 6.9 W per m 2 (projected anode area), and therefore are approaching theoretical limits. To understand bacterial versatility in mechanisms used for current generation, this Progress article explores the underlying reasons for exocellular electron transfer, including cellular respiration and possible cell–cell communication.

This work was financially supported by National Key Research and Development Program of China (2023YFE012400, 2020YFA0608100), Key Research Program of Frontier Sciences (ZDBS-LY-DQC019), National Natural Science Foundation of China (32371845, 42322306), Major Program of Institute of Applied Ecology, Chinese Academy of Sciences (IAEMP202201), International Partnership Program of Chinese Academy of Sciences (Grant No. 064GJHZ2022054FN) and the Youth Innovation Promotion Association CAS to Chao Wang (Y2022064). SM has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programmer (no. 101001608). FTM is supported by Generalitat Valenciana (CIDEGENT/2018/041) and the Spanish Ministry of Science and Innovation (PID2020-116578RB-I00 and EUR2022-134048). FTM and MD are supported by the Marc R. Benioff Revocable Trust and in collaboration with the World Economic Forum via the contract between ETH Zurich and University of Alicante ‘Mapping terrestrial ecosystem structure at the global scale’.

Soil water status is one of the most important environmental factors that control microbial activity and rate of soil organic matter (SOM) decomposition. Its effect can be partitioned into effect of water energy status (water potential) on cellular activity, effect of water volume on cellular motility, and aqueous diffusion of substrate and nutrients, as well as the effect of air content and gas-diffusion pathways on concentration of dissolved oxygen. However, moisture functions widely used in SOM decomposition models are often based on empirical functions rather than robust physical foundations that account for these disparate impacts of soil water. The contributions of soil water content and water potential vary from soil to soil according to the soil water characteristic (SWC), which in turn is strongly dependent on soil texture and structure. The overall goal of this study is to introduce a physically based modeling framework of aerobic microbial respiration that incorporates the role of SWC under arbitrary soil moisture status. The model was tested by comparing it with published datasets of SOM decomposition under laboratory conditions.

Background and aims Higher interannual precipitation variability is predicted for Southern California's shrubdominated systems, promoting soil moisture variation and changing community composition. We asked if soil microbial responses to rainfall regime will depend on litter inputs; showing direct effects of altered precipitation through soil moisture and indirect effects resulting from shifting litter inputs. Methods Soils were collected from a 2-year field rainfall manipulation experiment. Under lab conditions soils were subjected to high or low moisture pulses with litter amendments from native and exotic species in all combinations. Results Soil respiration was higher with larger water pulses, but rose over time in low pulse treatments (direct response). Litter additions from exotic species promoted greater respiration, and results were stronger under higher soil moisture (indirect response). Extracellular enzyme activities generally were higher with exotic litter and under high moisture pulses. Those involved in N-cycling had much larger increases activity for the exotic litter addition - high moisture pulse scenarios compared to other treatments. Conclusions Our results indicate the potential for microbial acclimation to drought conditions over short timescales and that below-ground processes are sensitive to direct and indirect effects of shifting rainfall regimes, especially where invasion is promoted by future climate change.