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"morphs"
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A Double Siamese Framework for Differential Morphing Attack Detection
2021
Face morphing and related morphing attacks have emerged as a serious security threat for automatic face recognition systems and a challenging research field. Therefore, the availability of effective and reliable morphing attack detectors is strongly needed. In this paper, we proposed a framework based on a double Siamese architecture to tackle the morphing attack detection task in the differential scenario, in which two images, a trusted live acquired image and a probe image (morphed or bona fide) are given as the input for the system. In particular, the presented framework aimed to merge the information computed by two different modules to predict the final score. The first one was designed to extract information about the identity of the input faces, while the second module was focused on the detection of artifacts related to the morphing process. Experimental results were obtained through several and rigorous cross-dataset tests, exploiting three well-known datasets, namely PMDB, MorphDB, and AMSL, containing automatic and manually refined facial morphed images, showing that the proposed framework was able to achieve satisfying results.
Journal Article
Wing dimorphism in aphids
2006
Many species of insects display dispersing and nondispersing morphs. Among these, aphids are one of the best examples of taxa that have evolved specialized morphs for dispersal versus reproduction. The dispersing morphs typically possess a full set of wings as well as a sensory and reproductive physiology that is adapted to flight and reproducing in a new location. In contrast, the nondispersing morphs are wingless and show adaptations to maximize fecundity. In this review, we provide an overview of the major features of the aphid wing dimorphism. We first provide a description of the dimorphism and an overview of its phylogenetic distribution. We then review what is known about the mechanisms underlying the dimorphism and end by discussing its evolutionary aspects.
Journal Article
Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa
by
Chang, Lichun
,
Liang, Jianli
,
Wu, Jian
in
Animal Genetics and Genomics
,
auxins
,
Base Sequence
2021
Background
Despite the prevalence and recurrence of polyploidization in the speciation of flowering plants, its impacts on crop intraspecific genome diversification are largely unknown.
Brassica rapa
is a mesopolyploid species that is domesticated into many subspecies with distinctive morphotypes.
Results
Herein, we report the consequences of the whole-genome triplication (WGT) on intraspecific diversification using a pan-genome analysis of 16 de novo assembled and two reported genomes. Among the genes that derive from WGT, 13.42% of polyploidy-derived genes accumulate more transposable elements and non-synonymous mutations than other genes during individual genome evolution. We denote such genes as being “flexible.” We construct the
Brassica rapa
ancestral genome and observe the continuing influence of the dominant subgenome on intraspecific diversification in
B. rapa
. The gene flexibility is biased to the more fractionated subgenomes (MFs), in contrast to the more intact gene content of the dominant LF (least fractionated) subgenome. Furthermore, polyploidy-derived flexible syntenic genes are implicated in the response to stimulus and the phytohormone auxin; this may reflect adaptation to the environment. Using an integrated graph-based genome, we investigate the structural variation (SV) landscapes in 524
B. rapa
genomes. We observe that SVs track morphotype domestication. Four out of 266 candidate genes for Chinese cabbage domestication are speculated to be involved in the leafy head formation.
Conclusions
This pan-genome uncovers the possible contributions of allopolyploidization on intraspecific diversification and the possible and underexplored role of SVs in favorable trait domestication. Collectively, our work serves as a rich resource for genome-based
B. rapa
improvement.
Journal Article
Biodiversity of Lignicolous Freshwater Hyphomycetes from China and Thailand and Description of Sixteen Species
by
Hyde, Kevin D.
,
McKenzie, Eric H. C.
,
Bao, Dan-Feng
in
Aquapteridospora bambusinum
,
asexual-morph
,
Asexuality
2021
Freshwater hyphomycetes are a highly diverse group of fungi with a worldwide distribution and have been mostly reported from tropical and subtropical regions. During investigations of freshwater fungi from the Greater Mekong subregion in China and Thailand, sixteen freshwater hyphomycetes (three of them belong to the class Dothideomycetes while thirteen belong to the class Sordariomycetes) were collected. Based on morphology and multi-gene phylogenetic analyses, Neospadicoides thailandica, Pseudodactylaria aquatica, Sporidesmium nujiangense, Tetraploa thailandica, Vamsapriyaaquatica and Wongia fusiformis are described as new species; Aquapteridospora bambusinum is proposed as a new combination; Acrodictys liputii, Chloridium gonytrichii, Pseudoberkleasmium chiangmaiense, Pleomonodictys capensis, Sporidesmium aturbinatum and Vamsapriya indica are reported as new country records; and Sporidesmium tropicale, Sporoschisma chiangraiense and Sporoschisma longicatenatum are introduced as three new collections. In addition, a checklist of freshwater fungi from China over the last five years is also provided.
Journal Article
Transposable element insertion: a hidden major source of domesticated phenotypic variation in Brassica rapa
2022
Summary Transposable element (TE) is prevalent in plant genomes. However, studies on their impact on phenotypic evolution in crop plants are relatively rare, because systematically identifying TE insertions within a species has been a challenge. Here, we present a novel approach for uncovering TE insertion polymorphisms (TIPs) using pan‐genome analysis combined with population‐scale resequencing, and we adopt this pipeline to retrieve TIPs in a Brassica rapa germplasm collection. We found that 23% of genes within the reference Chiifu‐401‐42 genome harbored TIPs. TIPs tended to have large transcriptional effects, including modifying gene expression levels and altering gene structure by introducing new introns. Among 524 diverse accessions, TIPs broadly influenced genes related to traits and acted a crucial role in the domestication of B. rapa morphotypes. As examples, four specific TIP‐containing genes were found to be candidates that potentially involved in various climatic conditions, promoting the formation of diverse vegetable crops in B. rapa. Our work reveals the hitherto hidden TIPs implicated in agronomic traits and highlights their widespread utility in studies of crop domestication.
Journal Article
Family morph matters: factors determining survival and recruitment in a long‐lived polymorphic raptor
by
Amar, Arjun
,
Sumasgutner, Petra
,
Tate, Gareth J.
in
Accipiter
,
Accipiter melanoleucus
,
adults
2016
From an evolutionary perspective, recruitment into the breeding population represents one of the most important life‐history stages and ultimately determines the effective population size. In order to contribute to the next generation, offspring must survive to sexual maturity, secure a territory and find a mate. In this study, we explore factors influencing both offspring survival and their subsequent recruitment into the local breeding population in a long‐lived urban raptor, the black sparrowhawk (Accipiter melanoleucus). Adult black sparrowhawks show discrete colour polymorphism (dark and light morphs), and in South Africa, morphs are distributed clinally with the highest proportion of dark morphs (c.75%) present in our study population on the Cape Peninsula. Parental morph was associated with both survival and recruitment. For survival, parental morph combination was important – with young produced by pairs of contrasting morphs having higher survival rates than young fledged from like‐pairs. The association between recruitment and morph was more complex; with an interaction between male morph and breeding time, whereby recruitment of offspring from dark morph fathers was more likely when fledging earlier in the season. The opposite relationship was found for light morph fathers, with their offspring more likely to be recruited if fledged later in the season. This interaction may be due to differential morph‐specific hunting success of fathers (males contribute most food provisioning), linked to background matching and crypsis in different weather conditions. Dark morph males may hunt more successfully in rainier and cloudier conditions, which occur more frequently earlier in the breeding season, and light morph males may be more successful later on, when weather conditions become increasingly brighter and drier. Our results reveal a complex situation whereby the family morph combination influences survival, and the father morphs specifically recruitment, revealing morph‐specific benefits dependent on the timing of breeding. These empirical data are among the first to support the idea that differential fitness consequence of morph combination may explain balanced polymorphism in a vertebrate population.
Journal Article
Phylogenetic diversity and ecophysiology of Candidate phylum Saccharibacteria in activated sludge
2016
Candidate phylum Saccharibacteria (former TM7) are abundant and widespread in nature, but little is known about their ecophysiology and detailed phylogeny. In this study phylogeny, morphology and ecophysiology of Saccharibacteria were investigated in activated sludge from nine wastewater treatment plants (WWTPs) from Japan and Denmark using the full-cycle 16S rRNA approach in combination with microautoradiography (MAR) and fluorescence in situ hybridization (FISH). Phylogenetic analysis showed that Saccharibacteria from all WWTPs were evenly distributed within subdivision 1 and 3 and in a distinct phylogenetic clade. Three probes were designed for the distinct saccharibacterial groups, and revealed morphotypes representing thin filaments, thick filaments and rods/cocci. MAR-FISH results showed that most probe-defined Saccharibacteria utilized glucose under aerobic-, nitrate reducing- and anaerobic conditions. Some Saccharibacteria also utilized N-acetylglucosamine, oleic acid, amino acids and butyrate, which are not predicted from available genomes so far. In addition, some filamentous Saccharibacteria exhibited β-galactosidase and lipase activities determined using a combination of enzyme-labeled fluorescence and FISH (ELF-FISH). No uptake of acetate, propionate, pyruvate, glycerol and ethanol was observed. These results indicate that Saccharibacteria is a phylogenetically diverse group and play a role in the degradation of various organic compounds as well as sugar compounds under aerobic-, nitrate reducing- and anaerobic conditions.
Candidatus Saccharibacteria in activated sludge are phylogenetically diverse and utilize oleic acid, amino acids,and N-acetylglucosamine as well as glucose as the carbon sources.
Graphical Abstract Figure.
Candidatus Saccharibacteria in activated sludge are phylogenetically diverse and utilize oleic acid, amino acids,and N-acetylglucosamine as well as glucose as the carbon sources.
Journal Article
Microplastics in shrimps: a study from the trawling grounds of north eastern part of Arabian Sea
by
Shukla, Satya Prakash
,
Gurjar, Udai Ram
,
Ramteke, Karankumar
in
Aquatic Pollution
,
Arabian Sea
,
Atmospheric Protection/Air Quality Control/Air Pollution
2021
Accumulation of microplastics (MPs) in marine organisms poses an imminent environmental threat and health risk due to the possibility of trophic transfer of accumulated MPs in ecologically important food chains. In this context, a field-level study was conducted on the fishing grounds of the north eastern part of the Arabian Sea through experimental fishing, and the gastrointestinal tracts (GT) of three different species of shrimps (
n
=180) were examined for the incidence of microplastics. The results showed that all shrimp caught from the fishing grounds had significant levels of MPs in the gastrointestinal tracts. A total number of 1220 microplastic items were recorded from the pooled samples, with an average of 6.78 ± 2.80 items per individual. The gastrointestinal tract showed an average number of 70.32 ± 34.67 MPs per gram of the gut material. The MPs with the size range of 100–250 μm were the most abundant form found in the shrimp species analyzed. Among the colored MP particles, black color was the most dominant (30.16%) form of MP. Fibers, fragments, pellets, beads, and films were the common morphotypes; however, fibers showed an occurrence of 39.40%, 47.39%, and 41.89% in the GTs of
Metapenaeus monoceros
,
Parapeneopsis stylifera
, and
Penaeus indicus
, respectively. In the present study, six types of plastic polymers were identified from the GTs of the studied samples. The findings confirm the presence of microplastics in the natural habitats of shrimps beyond the coast and indicate that shrimps caught from these coastal fishing grounds contain MPs in their gut. The findings underline the immediate scientific intervention for the microplastic reduction in the marine environment.
Graphical abstract
Journal Article
The sedimentary and remote-sensing reflection of biomass burning in Europe
2018
Aim: We provide the first European-scale geospatial training set relating the charcoal signal in surface lake sediments to fire parameters (number, intensity and area) recorded by satellite moderate resolution imaging spectroradiometer (MODIS) sensors. Our calibration is intended for quantitative reconstructions of key fire-regime parameters by using sediment sequences of microscopic (MIC from pollen slides, particles 10–500 μm) and macroscopic charcoal (MAC from sieves, particles > 100 μm). Location: North–south and east–west transects across Europe, covering the mediterranean, temperate, alpine, boreal and steppe biomes. Time period: Lake sediments and MODIS active fire and burned area products were collected for the years 2012–2015. Methods: Cylinder sediment traps were installed in lakes to annually collect charcoal particles in sediments. We quantitatively assessed the relationships between MIC and MAC influx (particles/cm2/year) and the MODIS-derived products to identify source areas of charcoal and the extent to which lake-sediment charcoal is linked to fire parameters across the continent. Results: Source area of sedimentary charcoal was estimated to a 40-km radius around sites for both MIC and MAC particles. Fires occurred in grasslands and in forests, with grass morphotypes of MAC accurately reflecting the burned fuel-type. Despite the lack of local fires around the sites, MAC influx levels reached those reported for local fires. Both MIC and MAC showed strong and highly significant relationships with the MODIS-derived fire parameters, as well as with climatic variation along a latitudinal temperature gradient. Main conclusions: MIC and MAC are suited to quantitatively reconstructing fire number and fire intensity on a regional scale. However, burned area may only be estimated using MAC. Local fires may be identified by using several lines of evidence, e.g. analysis of large particles (> 600 μm), magnetic susceptibility and sedimentological data. Our results offer new insights and applications to quantitatively reconstruct fires and to interpret available sedimentary charcoal records.
Journal Article
Ecological correlates and genetic consequences of evolutionary transitions from distyly to homostyly
2017
The outbreeding floral polymorphism heterostyly frequently breaks down, resulting in the evolution of self-fertilization as a result of homostyle formation. Here, the loss of floral polymorphism in distylous Primula oreodoxa, a sub-alpine species restricted to western Sichuan, China, was examined by investigating the ecological correlates and genetic consequences of mating system transitions. Several key questions were addressed. (1) What are the frequencies, geographical distribution and reproductive characteristics of floral morphs in distylous and homostylous populations? (2) Does increased elevation influence pollinator service and the likelihood of inbreeding in populations? (3) How often has homostyly originated and what are the consequences of the breakdown of distyly for the amounts and distribution of genetic diversity in populations?
Fourteen populations throughout the range of P. oreodoxa were sampled, and morph frequencies and floral characteristics were recorded. Polymorphism at microsatellite loci and chloroplast DNA (cpDNA) variation were used to quantify population genetic structure and genetic relationships among populations. Controlled pollinations and studies of pollen tube growth and fertility were conducted to determine the compatibility status of populations and their facility for autonomous self-pollination. Finally, visitation rates of long- and short-tongued pollinators to distylous and homostylous populations at different elevations were compared to determine if increased elevation was associated with deterioration in pollinator service.
In contrast to most heterostylous species, both distylous and homostylous morphs of P. oreodoxa are highly self-compatible, but only homostyles have the facility for autonomous self-pollination. Homostyles set significantly more fruit and seeds following open pollination than the distylous morphs. Visitation by long-tongued pollinators was significantly lower in homostylous populations, and overall rates of insect visitation decreased with elevation. Genetic diversity was significantly lower in homostylous populations, with evidence of increased inbreeding at higher elevation. Patterns of cpDNA variation were consistent with multiple transitions from distyly to homostyly and limited gene flow among populations.
The results of this study support the hypothesis that the multiple loss of floral polymorphism in distylous P. oreodoxa is associated with unsatisfactory pollinator service, with homostyles benefiting from reproductive assurance as a result of autonomous self-pollination.
Journal Article