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124 result(s) for "multi-variate"
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Decoding in the Fourth Dimension: Classification of Temporal Patterns and Their Generalization Across Locations
Neuroimaging research has increasingly used decoding techniques, in which multivariate statistical methods identify patterns in neural data that allow the classification of experimental conditions or participant groups. Typically, the features used for decoding are spatial in nature, including voxel patterns and electrode locations. However, the strength of many neurophysiological recording techniques such as electroencephalography or magnetoencephalography is in their rich temporal, rather than spatial, content. The present report introduces the time‐GAL toolbox, which implements a decoding method based on time information in electrophysiological recordings. The toolbox first quantifies the decodable information contained in neural time series. This information is then used in a subsequent step, generalization across location (GAL), which characterizes the relationship between sensor locations based on their ability to cross‐decode. Two datasets are used to demonstrate the usage of the toolbox, involving (1) event‐related potentials in response to affective pictures and (2) steady‐state visual evoked potentials in response to aversively conditioned grating stimuli. In both cases, experimental conditions were successfully decoded based on the temporal features contained in the neural time series. Spatial cross‐decoding occurred in regions known to be involved in visual and affective processing. We conclude that the approach implemented in the time‐GAL toolbox holds promise for analyzing neural time series from a wide range of paradigms and measurement domains providing an assumption‐free method to quantifying differences in temporal patterns of neural information processing and whether these patterns are shared across sensor locations. Time‐GAL toolbox is a new decoding‐based toolbox for analyzing neurobiological time series such as EEG or MEG recordings. Its methodology uses the temporal information contained in neurophysiological activity to describe the spatial dependency along the brain locations during the trial time.
CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave
Recent years have seen an increase in the popularity of multivariate pattern (MVP) analysis of functional magnetic resonance (fMRI) data, and, to a much lesser extent, magneto- and electro-encephalography (M/EEG) data. We present CoSMoMVPA, a lightweight MVPA (MVP analysis) toolbox implemented in the intersection of the Matlab and GNU Octave languages, that treats both fMRI and M/EEG data as first-class citizens. CoSMoMVPA supports all state-of-the-art MVP analysis techniques, including searchlight analyses, classification, correlations, representational similarity analysis, and the time generalization method. These can be used to address both data-driven and hypothesis-driven questions about neural organization and representations, both within and across: space, time, frequency bands, neuroimaging modalities, individuals, and species. It uses a uniform data representation of fMRI data in the volume or on the surface, and of M/EEG data at the sensor and source level. Through various external toolboxes, it directly supports reading and writing a variety of fMRI and M/EEG neuroimaging formats, and, where applicable, can convert between them. As a result, it can be integrated readily in existing pipelines and used with existing preprocessed datasets. CoSMoMVPA overloads the traditional volumetric searchlight concept to support neighborhoods for M/EEG and surface-based fMRI data, which supports localization of multivariate effects of interest across space, time, and frequency dimensions. CoSMoMVPA also provides a generalized approach to multiple comparison correction across these dimensions using Threshold-Free Cluster Enhancement with state-of-the-art clustering and permutation techniques. CoSMoMVPA is highly modular and uses abstractions to provide a uniform interface for a variety of MVP measures. Typical analyses require a few lines of code, making it accessible to beginner users. At the same time, expert programmers can easily extend its functionality. CoSMoMVPA comes with extensive documentation, including a variety of runnable demonstration scripts and analysis exercises (with example data and solutions). It uses best software engineering practices including version control, distributed development, an automated test suite, and continuous integration testing. It can be used with the proprietary Matlab and the free GNU Octave software, and it complies with open source distribution platforms such as NeuroDebian. CoSMoMVPA is Free/Open Source Software under the permissive MIT license. Website: http://cosmomvpa.org Source code: https://github.com/CoSMoMVPA/CoSMoMVPA.
Meta-analysis reveals weak associations between intrinsic state and personality
Individual differences in behaviour characterize humans and animals alike. A hot field in behavioural ecology asks why this variation in ‘personality’ evolved. Theory posits that selection favours the integration of ‘intrinsic state’ and behaviour. Metabolism, hormones, energetic reserves and structural size have particularly been proposed as states covarying with behaviour among-individuals, either genetically or through plasticity integration. We conducted a meta-analysis estimating the amount of among-individual variation in behaviour attributable to variation in state. Our literature search showed that only 22% of the studies claiming to estimate individual-level associations between state and behaviour actually did so. Our meta-analysis revealed that relatively aggressive, bold, explorative and/or active individuals had relatively high metabolic rates, hormone levels, body weights and/or body sizes. The proportion of among-individual variation common to state and behaviour was nevertheless small (approx. 5%). This means that (i) adaptive explanations involving intrinsic states fail to explain much individual variation in behaviour, (ii) empiricists should consider nonlinear, additive or interactive effects of (multiple) intrinsic states, (iii) explanations not involving intrinsic states might be important, or (iv) empirical tests of state-dependent personality theory were inappropriate. Our meta-analysis highlights the importance of feedback between empiricists and theoreticians in the study of adaptive behavioural variation.
On Families of Distributions with Shape Parameters
Univariate continuous distributions are one of the fundamental components on which statistical modelling, ancient and modern, frequentist and Bayesian, multi-dimensional and complex, is based. In this article, I review and compare some of the main general techniques for providing families of typically unimodal distributions on ℝ with one or two, or possibly even three, shape parameters, controlling skewness and/or tailweight, in addition to their all-important location and scale parameters. One important and useful family is comprised of the 'skew-symmetric' distributions brought to prominence by Azzalini. As these are covered in considerable detail elsewhere in the literature, I focus more on their complements and competitors. Principal among these are distributions formed by transforming random variables, by what I call 'transformation of scale'—including two-piece distributions—and by probability integral transformation of nonuniform random variables. I also treat briefly the issues of multi-variate extension, of distributions on subsets of ℝ and of distributions on the circle. The review and comparison is not comprehensive, necessarily being selective and therefore somewhat personal.
Intrinsic multi-scale analysis: a multi-variate empirical mode decomposition framework
A novel multi-scale approach for quantifying both inter- and intra-component dependence of a complex system is introduced. This is achieved using empirical mode decomposition (EMD), which, unlike conventional scale-estimation methods, obtains a set of scales reflecting the underlying oscillations at the intrinsic scale level. This enables the data-driven operation of several standard data-association measures (intrinsic correlation, intrinsic sample entropy (SE), intrinsic phase synchrony) and, at the same time, preserves the physical meaning of the analysis. The utility of multi-variate extensions of EMD is highlighted, both in terms of robust scale alignment between system components, a pre-requisite for inter-component measures, and in the estimation of feature relevance. We also illuminate that the properties of EMD scales can be used to decouple amplitude and phase information, a necessary step in order to accurately quantify signal dynamics through correlation and SE analysis which are otherwise not possible. Finally, the proposed multi-scale framework is applied to detect directionality, and higher order features such as coupling and regularity, in both synthetic and biological systems.
Decoding the dynamic representation of facial expressions of emotion in explicit and incidental tasks
Faces transmit a wealth of important social signals. While previous studies have elucidated the network of cortical regions important for perception of facial expression, and the associated temporal components such as the P100, N170 and EPN, it is still unclear how task constraints may shape the representation of facial expression (or other face categories) in these networks. In the present experiment, we used Multivariate Pattern Analysis (MVPA) with EEG to investigate the neural information available across time about two important face categories (expression and identity) when those categories are either perceived under explicit (e.g. decoding facial expression category from the EEG when task is on expression) or incidental task contexts (e.g. decoding facial expression category from the EEG when task is on identity). Decoding of both face categories, across both task contexts, peaked in time-windows spanning 91–170 ms (across posterior electrodes). Peak decoding of expression, however, was not affected by task context whereas peak decoding of identity was significantly reduced under incidental processing conditions. In addition, errors in EEG decoding correlated with errors in behavioral categorization under explicit processing for both expression and identity, however under incidental conditions only errors in EEG decoding of expression correlated with behavior. Furthermore, decoding time-courses and the spatial pattern of informative electrodes showed consistently better decoding of identity under explicit conditions at later-time periods, with weak evidence for similar effects for decoding of expression at isolated time-windows. Taken together, these results reveal differences and commonalities in the processing of face categories under explicit Vs incidental task contexts and suggest that facial expressions are processed to a richer degree under incidental processing conditions, consistent with prior work indicating the relative automaticity by which emotion is processed. Our work further demonstrates the utility in applying multivariate decoding analyses to EEG for revealing the dynamics of face perception. •We decoded neural responses to facial expressions and identities from EEG.•Decoding peaked around 100 ms regardless of task context for expression and identity.•Task set affected decoding of identity at early stages but not expression.•At late stages both face categories were better decoded under explicit conditions.•Expression may be better processed under incidental conditions than identity.
Queueing Systems with Random Volume Customers and a Sectorized Unlimited Memory Buffer
In the present paper, we concentrate on basic concepts connected with the theory of queueing systems with random volume customers and a sectorized unlimited memory buffer. In such systems, the arriving customers are additionally characterized by a non-negative random volume vector. The vector’s indications can be understood as the sizes of portions of information of a different type that are located in the sectors of memory space of the system during customers’ sojourn in it. This information does not change while a customer is present in the system. After service termination, information immediately leaves the buffer, releasing its resources. In analyzed models, the service time of a customer is assumed to be dependent on his volume vector characteristics, which has influence on the total volume vector distribution. We investigate three types of such queueing systems: the Erlang queueing system, the single-server queueing system with unlimited queue and the egalitarian processor sharing system. For these models, we obtain a joint distribution function of the total volume vector in terms of Laplace (or Laplace–Stieltjes) transforms and formulae for steady-state initial mixed moments of the analyzed random vector, in the case when the memory buffer is composed of two sectors. We also calculate these characteristics for some practical case in which the service time of a customer is proportional to the customer’s length (understood as the sum of the volume vector’s indications). Moreover, we present some numerical computations illustrating theoretical results.
Elman and feedforward neural network based models for predicting mechanical properties of flow formed AA6082 tubes
The measurement of the mechanical properties of flow-formed products typically requires destructive testing, which may not always be feasible. To address this, the present study proposes a parametric predictive model for H30 aluminium tubes produced via flow forming, enabling the estimation of the final mechanical properties without additional physical trials. This approach offers designers the advantage of reducing the need for extensive experimentation. This study also facilitates the selection of optimal flow-forming parameters to achieve the desired mechanical properties. The key input parameters—feed speed (FS) ratio, axial stagger (AS), and infeed (IF)—were systematically varied, and the corresponding outputs—yield strength, ultimate tensile strength (UTS), and percentage elongation—were measured. Three predictive models were developed and evaluated: multivariate regression (MR), feedforward neural network (FNN), and Elman neural network (ENN). Among these, the FNN demonstrated superior predictive accuracy when validated against experimental data with maximum average prediction error of 7.45%, outperforming ENN and MR having 7.64% and 12.4%, respectively.
A Novel Method for the Estimation of Higher Heating Value of Municipal Solid Wastes
The measurement of the higher heating value (HHV) of municipal solid wastes (MSWs) plays a key role in the disposal process, especially via thermochemical approaches. An optimized multi-variate grey model (OBGM (1, N)) is introduced to forecast the MSWs’ HHV to high accuracy with sparse data. A total of 15 cities and MSW from the respective city were considered to develop and verify the multi-variant models. Results show that the most accurate model was POBGM (1, 5) of which the least error measured 5.41% MAPE (mean absolute percentage error). Ash, being a major component in MSW, is the most important factor affecting HHV, followed by volatiles, fixed carbon and water contents. Most data can be included by using the prediction interval (PI) method with 95% confidence intervals. In addition, the estimations indicated that the MAPE from estimating the HHV for various MSW samples, collected from various cities, were in the range of 3.06–34.50%, depending on the MSW sample.
Talking with hands and feet: Selective somatosensory attention and fMRI enable robust and convenient brain-based communication
•Locus of somatosensory attention can be reliably decoded from fMRI activation.•Attention to right hand/left foot is a convenient fMRI-BCI communication paradigm.•Effective communication can be obtained with limited amount of training data.•Using cytoarchitectonic maps for MVPA is an objective and timesaving approach. In brain-based communication, voluntarily modulated brain signals (instead of motor output) are utilized to interact with the outside world. The possibility to circumvent the motor system constitutes an important alternative option for severely paralyzed. Most communication brain-computer interface (BCI) paradigms require intact visual capabilities and impose a high cognitive load, but for some patients, these requirements are not given. In these situations, a better-suited, less cognitively demanding information-encoding approach may exploit auditorily-cued selective somatosensory attention to vibrotactile stimulation. Here, we propose, validate and optimize a novel communication-BCI paradigm using differential fMRI activation patterns evoked by selective somatosensory attention to tactile stimulation of the right hand or left foot. Using cytoarchitectonic probability maps and multi-voxel pattern analysis (MVPA), we show that the locus of selective somatosensory attention can be decoded from fMRI-signal patterns in (especially primary) somatosensory cortex with high accuracy and reliability, with the highest classification accuracy (85.93%) achieved when using Brodmann area 2 (SI-BA2) at a probability level of 0.2. Based on this outcome, we developed and validated a novel somatosensory attention-based yes/no communication procedure and demonstrated its high effectiveness even when using only a limited amount of (MVPA) training data. For the BCI user, the paradigm is straightforward, eye-independent, and requires only limited cognitive functioning. In addition, it is BCI-operator friendly given its objective and expertise-independent procedure. For these reasons, our novel communication paradigm has high potential for clinical applications.