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Changes in the distribution of rainfall and the occurrence of extreme rain events will alter the size and persistence of aquatic ecosystems. Such alterations may affect the structure of local aquatic communities in terms of species composition, and by altering species interactions. In many aquatic ecosystems, leaf litter sustains detrital food webs and could regulate the responses of communities to changes in rainfall. Few empirical studies have focused on how rainfall changes will affect aquatic communities and none have evaluated if basal resource diversity can increase resistance to such rainfall effects. In this study, we used water-holding terrestrial bromeliads, a tropical aquatic ecosystem, to test how predicted rainfall changes and litter diversity may affect community composition and trophic interactions. We used structural equation modeling to investigate the combined effects of rainfall changes and litter diversity on trophic interactions. We demonstrated that changes in rainfall disrupted trophic relationships, even though there were only minor direct effects on species abundance, richness, and community composition. Litter diversity was not able to reduce the impact of changes in rainfall on trophic interactions. We suggest that changes in rainfall can alter the way in which species interact with each other, decreasing the linkages among trophic groups. Such reductions in biotic interactions under climate change will have critical consequences for the functioning of tropical aquatic ecosystems.

Community similarity declines with increasing geographic distance if species tend to be locally adapted or if they are dispersal limited. The distance–decay of similarity has been shown for bacteria previously, but distinguishing between these competing mechanisms is difficult from observational surveys. I found little evidence of a relationship between geographic distance and similarity in community composition in an aquatic bacterial community. When bacterial colonization occurred into initially identical sterile microcosms across a woodland, a strong distance–decay relationship was observed after 28 days, implying that dispersal limitation created a strong pattern in these communities in the absence of environmental differences. This conclusion was not supported by the results of a reciprocal transplant experiment. When microcosms at the extremities of the study area were transplanted to the opposite end of the study area, the communities converged on the community composition at the site to which they were transplanted. This convergence did not depend on whether colonization into the microcosms was prevented, implying a minor role for dispersal limitation over these spatial and temporal scales. Additional manipulations of colonization rates were consistent with the hypothesis that dispersal limitation structured these communities over short time scales (a few days), but that dispersal limitation had a minor role over longer time scales (>7 days).

Food webs of freshwater ecosystems can be subsidized by allochthonous resources. However, it is still unknown which environmental factors regulate the relative consumption of allochthonous resources in relation to autochthonous resources. Here, we evaluated the importance of allochthonous resources (litterfall) for the aquatic food webs in Neotropical tank bromeliads, a naturally replicated aquatic microcosm. Aquatic invertebrates were sampled in more than 100 bromeliads within either open or shaded habitats and within five geographically distinct sites located in four different countries. Using stable isotope analyses, we determined that allochthonous sources comprised 74% (±17%) of the food resources of aquatic invertebrates. However, the allochthonous contribution to aquatic invertebrates strongly decreased from shaded to open habitats, as light incidence increased in the tanks. The density of detritus in the tanks had no impact on the importance of allochthonous sources to aquatic invertebrates. This overall pattern held for all invertebrates, irrespective of the taxonomic or functional group to which they belonged. We concluded that, over a broad geographic range, aquatic food webs of tank bromeliads are mostly allochthonous‐based, but the relative importance of allochthonous subsidies decreases when light incidence favors autochthonous primary production. These results suggest that, for other freshwater systems, some of the between‐study variation in the importance of allochthonous subsidies may similarly be driven by the relative availability of autochthonous resources.

The importance of predators in influencing community structure is a well-studied area of ecology. However, few studies test ecological hypotheses of predation in multi-predator microbial communities. The phytotelmic community found within the water-filled leaves of the pitcher plant, Sarracenia purpurea, exhibits a simple trophic structure that includes multiple protozoan predators and microbial prey. Using this system, we sought to determine whether different predators target distinct microorganisms, how interactions among protozoans affect resource (microorganism) use, and how predator diversity affects prey community diversity. In particular, we endeavored to determine if protozoa followed known ecological patterns such as keystone predation or generalist predation. For these experiments, replicate inquiline microbial communities were maintained for seven days with five protozoan species. Microbial community structure was determined by 16S rRNA gene amplicon sequencing (iTag) and analysis. Compared to the control (no protozoa), two ciliates followed patterns of keystone predation by increasing microbial evenness. In pairwise competition treatments with a generalist flagellate, prey communities resembled the microbial communities of the respective keystone predator in monoculture. The relative abundance of the most common bacterial Operational Taxonomic Unit (OTU) in our system decreased compared to the control in the presence of these ciliates. This OTU was 98% similar to a known chitin degrader and nitrate reducer, important functions for the microbial community and the plant host. Collectively, the data demonstrated that predator identity had a greater effect on prey diversity and composition than overall predator diversity.

Ecological communities hosted within phytotelmata (plant compartments filled with water) provide an excellent opportunity to test ecological theory and to advance our understanding of how local and global environmental changes affect ecosystems. However, insights from bromeliad phytotelmata communities are currently limited by scarce accounts of microfauna assemblages, even though these assemblages are critical in transferring, recycling, and releasing nutrients in these model ecosystems. Here, we analyzed natural microfaunal communities in leaf compartments of 43 bromeliads to identify the key environmental filters underlying their community structures. We found that microfaunal community richness and abundance were negatively related to canopy openness and vertical height above the ground. These associations were primarily driven by the composition of amoebae and flagellate assemblages and indicate the importance of bottom‐up control of microfauna in bromeliads. Taxonomic richness of all functional groups followed a unimodal relationship with water temperature, peaking at 23–25°C and declining below and above this relatively narrow thermal range. This suggests that relatively small changes in water temperature under expected future climate warming may alter taxonomic richness and ecological structure of these communities. Our findings improve the understanding of this unstudied but crucial component of bromeliad ecosystems and reveal important environmental filters that likely contribute to overall bromeliad community structure and function. Insights from bromeliad phytotelmata communities are currently limited by scarce accounts of microfauna assemblages that are critical in transferring, recycling, and releasing nutrients in these model ecosystems. Our findings improve the understanding of this unstudied but crucial component of bromeliad ecosystems and reveal important environmental filters that likely contribute to overall bromeliad community structure and function.

The primary goal of this study was to evaluate the relative importance of habitat physical properties, bottom-up and top-down factors, and their interaction on algae biomass in tank-bromeliads. We sampled algae biomass (chlorophyll-a concentration), micro-metazoan density, mosquito abundance, and several environmental variables, including nutrient concentrations and characteristics of the habitat physical structure, in a survey of 64 tank-bromeliads of four different species ( Aechmea nudicaulis , Aechmea lingulata , Neoregelia cruenta , and Vriesea neoglutinosa ). We analyzed the complete and individual bromeliad species datasets using an information-theoretic model selection approach (Akaike’s information criterion). Bromeliad species, maximum water volume, and bromeliad diameter comprised the best model for determining chlorophyll-a concentrations for the complete dataset. The maximum water volume also comprised the best model to explain chlorophyll-a concentrations in three of four bromeliad species datasets. Interactions between consumers and nutrient concentration were included in the subsequent models, but they were not statistically significant. Taken together, these results demonstrate that the impact of habitat size on the associated autotrophic biomass occurs possibly via changes in community susceptibility to disturbances, particularly drought. We can conclude that habitat size is more important than resource availability or herbivory on phytotelm autotrophic biomass regulation in these natural microcosms.

Microorganisms are ubiquitous on Earth and can inhabit almost every environment. In a complex heterogeneous environment or in face of ecological disturbance, the microbes adjust to fluctuating environmental conditions through a cascade of cellular and molecular systems. Their habitats differ from cold microcosms of Antarctica to the geothermal volcanic areas, terrestrial to marine, highly alkaline zones to the extremely acidic areas and freshwater to brackish water sources. The diverse ecological microbial niches are attributed to the versatile, adaptable nature under fluctuating temperature, nutrient availability and pH of the microorganisms. These organisms have developed a series of mechanisms to face the environmental changes and thereby keep their role in mediate important ecosystem functions. The underlying mechanisms of adaptable microbial nature are thoroughly investigated at the cellular, genetic and molecular levels. The adaptation is mediated by a spectrum of processes like natural selection, genetic recombination, horizontal gene transfer, DNA damage repair and pleiotropy-like events. This review paper provides the fundamentals insight into the microbial adaptability besides highlighting the molecular network of microbial adaptation under different environmental conditions.

In the present work, natural rubber (NR) biodegradation, by means of a microbial consortium, naturally selected in a tyre dump soil, has been evaluated. To this purpose, prepared soil microcosms were incubated for 236 days, at room temperature, and natural light/dark cycles. The effect of primary C-source and fresh soil addition, soil aeration, and humidity maintenance has been monitored by means of microbiological and respirometric analysis, dry weight loss determinations, and SEM micrographs. During the incubation, in biodegradation microcosms (BD), containing NR samples, the produced CO2 was significantly higher than that of biotic controls (BC). Furthermore, after 236 days, a NR dry weight loss of 15.6%, in BD microcosms, was registered, about four-fold higher than that registered in BC control (3.7%). Obtained results confirmed that the naturally selected microbial consortium was able to use NR as the only C-source and to biodegrade it. The positive effect of soil mixing evidenced that the biodegradation process was mainly carried out by aerobic biomass, especially filamentous fungi, as confirmed by microbial counts and SEM observations. Results obtained in the microcosm study provided useful information in terms of soil aeration and nutrient amendment in view of a future biodegradation process scale-up.

Aim Utilization of biological nitrification inhibition (BNI) strategy can reduce nitrogen losses in agricultural systems. This study is aimed at characterizing BNI activity in a plant-soil system using a biparental hybrid population of Brachiaria humidicola (Bh), a forage grass with high BNI potential but of low nutritional quality. Methods Soil nitrification rates and BNI potential in root-tissue were analyzed in a hybrid population (117), obtained from two contrasting Bh parents, namely CIAT 26146 and CIAT 16888, with low and high BNI activity, respectively. Observed BNI activity was validated by measuring archaeal (AOA) and bacterial (AOB) nitrifier abundance in the rhizosphere soil of parents and contrasting hybrids. Comparisons of the BNI potential of four forage grasses were conducted to evaluate the feasibility of using nitrification rates to measure BNI activity under field and pot grown conditions. Results High BNI activity was the phenotype most commonly observed in the hybrid population (72%). BNI activity showed a similar tendency for genotypes grown in pots and in the field. A reduction in AOA abundance was found for contrasting hybrids with low nitrification rates and high BNI potential. Conclusion Bh hybrids with high levels of BNI activity were identified. Our results demonstrate that the microcosm incubation and the in vitro bioassay may be used as complementary methods for effectively assessing BNI activity. The full expression of BNI potential of Bh genotypes grown in the soil (i.e. low nitrification rates) requires up to one year to develop, after planting.

Arbuscular mycorrhizal (AM) fungi are obligate biotrophs that acquire carbon (C) solely from host plants. AM fungi can proliferate hyphae in, and acquire nitrogen (N) from, organic matter. Although they can transfer some of that N to plants, we tested the hypothesis that organic matter is an important N source for the AM fungi themselves. We grew pairs of plants with and without the AM fungus Glomus hoi in microcosms that allowed only the fungus access to a ¹⁵N/¹³C-labeled organic patch; in some cases, one plant was shaded to reduce C supply to the fungus. The fungal hyphae proliferated vigorously in the patch, irrespective of shading, and increased plant growth and N content; ∼3% of plant N came from the patch. The extraradical mycelium of the fungus was N-rich (3– 5% N) and up to 31% of fungal N came from the patch, confirming the hypothesis. The fungus acquired N as decomposition products, because hyphae were not ¹³C-enriched. In a second experiment, hyphae of both G. hoi and Glomus mosseae that exploited an organic material patch were also better able to colonize a new host plant, demonstrating a fungal growth response. These findings show that AM fungi can obtain substantial amounts of N from decomposing organic materials and can enhance their fitness as a result. The large biomass and high N demand of AM fungi means that they represent a global N pool equivalent in magnitude to fine roots and play a substantial and hitherto overlooked role in the nitrogen cycle.