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231
result(s) for
"novel molecules"
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De Novo Drug Design Using Transformer-Based Machine Translation and Reinforcement Learning of an Adaptive Monte Carlo Tree Search
by
Ang, Dony
,
Atamian, Hagop S.
,
Rakovski, Cyril
in
artificial intelligence
,
Candidates
,
drug design
2024
The discovery of novel therapeutic compounds through de novo drug design represents a critical challenge in the field of pharmaceutical research. Traditional drug discovery approaches are often resource intensive and time consuming, leading researchers to explore innovative methods that harness the power of deep learning and reinforcement learning techniques. Here, we introduce a novel drug design approach called drugAI that leverages the Encoder–Decoder Transformer architecture in tandem with Reinforcement Learning via a Monte Carlo Tree Search (RL-MCTS) to expedite the process of drug discovery while ensuring the production of valid small molecules with drug-like characteristics and strong binding affinities towards their targets. We successfully integrated the Encoder–Decoder Transformer architecture, which generates molecular structures (drugs) from scratch with the RL-MCTS, serving as a reinforcement learning framework. The RL-MCTS combines the exploitation and exploration capabilities of a Monte Carlo Tree Search with the machine translation of a transformer-based Encoder–Decoder model. This dynamic approach allows the model to iteratively refine its drug candidate generation process, ensuring that the generated molecules adhere to essential physicochemical and biological constraints and effectively bind to their targets. The results from drugAI showcase the effectiveness of the proposed approach across various benchmark datasets, demonstrating a significant improvement in both the validity and drug-likeness of the generated compounds, compared to two existing benchmark methods. Moreover, drugAI ensures that the generated molecules exhibit strong binding affinities to their respective targets. In summary, this research highlights the real-world applications of drugAI in drug discovery pipelines, potentially accelerating the identification of promising drug candidates for a wide range of diseases.
Journal Article
Novel and experimental therapeutics for the management of motor and non-motor Parkinsonian symptoms
2024
Background Both motor and non-motor symptoms of Parkinson’s disease (PD) have a substantial detrimental influence on the patient’s quality of life. The most effective treatment remains oral levodopa. All currently known treatments just address the symptoms; they do not completely reverse the condition.MethodologyIn order to find literature on the creation of novel treatment agents and their efficacy for PD patients, we searched PubMed, Google Scholar, and other online libraries. Results According to the most recent study on Parkinson’s disease (PD), a great deal of work has been done in both the clinical and laboratory domains, and some current scientists have even been successful in developing novel therapies for PD patients. Conclusion The quality of life for PD patients has increased as a result of recent research, and numerous innovative medications are being developed for PD therapy. In the near future, we will see positive outcomes regarding PD treatment.
Journal Article
Novel molecules as the emerging trends in cancer treatment: an update
by
Muniraj, Nethaji
,
Ravitchandirane, Raashmi
,
Khanam, Sofia
in
Antineoplastic Agents - therapeutic use
,
Antineoplastic Agents, Phytogenic - therapeutic use
,
Aquatic Organisms
2022
As per World Health Organization cancer remains as a leading killer disease causing nearly 10 million deaths in 2020. Since the burden of cancer increases worldwide, warranting an urgent search for anti-cancer compounds from natural sources. Secondary metabolites from plants, marine organisms exhibit a novel chemical and structural diversity holding a great promise as therapeutics in cancer treatment. These natural metabolites target only the cancer cells and the normal healthy cells are left unharmed. In the emerging trends of cancer treatment, the natural bioactive compounds have long become a part of cancer chemotherapy. In this review, we have tried to compile about eight bioactive compounds from plant origin viz. combretastatin, ginsenoside, lycopene, quercetin, resveratrol, silymarin, sulforaphane and withaferin A, four marine-derived compounds viz. bryostatins, dolastatins, eribulin, plitidepsin and three microorganisms viz.
Clostridium
,
Mycobacterium bovis
and
Streptococcus pyogenes
with their well-established anticancer potential, mechanism of action and clinical establishments are presented.
Journal Article
Assessment of newer molecules for the management of fall armyworm, Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae) on maize in India
by
Bhadru, D.
,
Kalisetti, Vani Sree
,
Kumar, M. V. Nagesh
in
Agricultural production
,
Agricultural research
,
Benzoates
2024
A field experiment was conducted to manage the maize fall armyworm (FAW),
Spodoptera frugiperda
J. E. Smith (Lepidoptera: Noctuidae) at Maize Research Centre, Agricultural Research Institute, Rajendranagar, Hyderabad during
kharif
, 2020 and
kharif
, 2021. Seven newer insecticide molecules were tested for their efficacy viz., Chlorantraniliprole 9.3% + Lambdacyhalothrin 4.6% ZC @ 0.5 ml L
−1
, Novaluron 5.25% + Emamectin benzoate 0.9% w/w SC @ 2 ml L
−1
, Emamectin benzoate 5% SG @ 0.4 g L
−1
, Spinetoram 11.7% w/w SC @ 0.5 ml L
−1
, Chlorantraniliprole 18.5% SC @ 0.4 ml L
−1
, Flubendiamide 480 FS @ 0.3 ml L
−1
, Cyantraniliprole 19.8%
+
Thiamethoxam 19.8% w/w FS @ 6 ml/kg seed and a untreated check served as the control. The treatments were laid out in Complete Randomized Block Design and replicated thrice. The mean per cent infestation was less in the plots treated with Chlorantraniliprole 9.3% + Lambdacyhalothrin 4.6% ZC @ 0.5 ml L
−1
(3.71) followed by Chlorantraniliprole 18.5% SC@ 0.4 ml L
−1
(3.78), Novaluron 5.25% + Emamectin benzoate 0.9% w/w SC @ 2 ml L
−1
(4.46), Spinetoram 11.7% w/w SC @ 0.5 ml L
−1
(4.57) and Emamectin benzoate 5% SG @ 0.4 g L
−1
(4.62) and all the treatments were found to be statistically on par with each other. The lowest mean Leaf Injury Rating (LIR) was recorded in the treatment of Chlorantraniliprole 18.5% SC @ 0.4 ml L
−1
(1.52) followed by Spinetoram 11.7% w/w SC @0.5 ml L
−1
(1.52), Chlorantraniliprole 9.3% + Lambdacyhalothrin 4.6% ZC @ 0.5 ml L
−1
(1.63). At harvest, ear damage rating was significantly low with Chlorantraniliprole 9.3% + Lambdacyhalothrin 4.6% ZC @ 0.5 ml L
−1
(1.23) followed by Novaluron 5.25% + Emamectin benzoate 0.9% w/w SC @ 2 ml L
−1
(1.27), Flubendiamide 480 FS @ 0.3 ml L
−1
(1.31), Chlorantraniliprole 18.5% SC @ 0.4 ml L
−1
(1.40) and Spinetoram 11.7% w/w SC @ 0.5 ml L
−1
(1.40). The grain yield was highest in Chlorantraniliprole 18.5% SC @ 0.4 ml L
−1
with 90.19 qha
−1
followed by Spinetoram 11.7% w/w SC @ 0.5 ml L
−1
88.33 qha
−1
.
Journal Article
The Effect of the New Lupeol Derivatives on Human Skin Cells as Potential Agents in the Treatment of Wound Healing
by
Stalińska, Joanna
,
Drukała, Justyna
,
Malinowska, Magdalena Anna
in
Aging
,
Alcohol
,
antioxidant mechanisms
2021
Skin barrier damage can be the result of various external factors including heat, radiation, chemicals and many others. Any interruption of the skin barrier integrity causes the exposure of the organism to harmful environmental factors. Therefore, there is an urgent need to develop novel therapeutics characterized by high bioavailability and effectiveness in skin damage recovery. Birch bark is known as a clinically proven, traditional medicinal remedy to accelerate wound healing. Lupeol, one of the main birch bark ingredients, shows a wide range of biological activity beneficial to the skin. The purpose of the research was to determine the influence of new lupeol derivatives on keratinocyte and fibroblast migration and proliferation, as well as to investigate various mechanisms of their antioxidant activity. The chemical modification of lupeol structure was intended to obtain more effective therapeutics characterized by higher bioavailability, permeability and safety of use. The novel triterpenes presented in this study were evaluated as the potential active ingredients preventing skin tissue degradation. Lupeol esters influence skin cells’ motility and proliferation. Importantly, they are able to reduce reactive oxygen species and act indirectly by protecting the skin protein structure from being oxidized by free radicals.
Journal Article
Burkholderia Bacteria Produce Multiple Potentially Novel Molecules that Inhibit Carbapenem-Resistant Gram-Negative Bacterial Pathogens
by
Depoorter, Eliza
,
Vandamme, Peter
,
De Canck, Evelien
in
Antibiotics
,
Antimicrobial activity
,
Antimicrobial agents
2021
Antimicrobial resistance in Gram-negative pathogens represents a global threat to human health. This study determines the antimicrobial potential of a taxonomically and geographically diverse collection of 263 Burkholderia (sensu lato) isolates and applies natural product dereplication strategies to identify potentially novel molecules. Antimicrobial activity is almost exclusively present in Burkholderia sensu stricto bacteria and rarely observed in the novel genera Paraburkholderia, Caballeronia, Robbsia, Trinickia, and Mycetohabitans. Fourteen isolates show a unique spectrum of antimicrobial activity and inhibited carbapenem-resistant Gram-negative bacterial pathogens. Dereplication of the molecules present in crude spent agar extracts identifies 42 specialized metabolites, 19 of which represented potentially novel molecules. The known identified Burkholderia metabolites include toxoflavin, reumycin, pyrrolnitrin, enacyloxin, bactobolin, cepacidin, ditropolonyl sulfide, and antibiotics BN-227-F and SF 2420B, as well as the siderophores ornibactin, pyochelin, and cepabactin. Following semipreparative fractionation and activity testing, a total of five potentially novel molecules are detected in active fractions. Given the molecular formula and UV spectrum, two of those putative novel molecules are likely related to bactobolins, and another is likely related to enacyloxins. The results from this study confirm and extend the observation that Burkholderia bacteria present exciting opportunities for the discovery of potentially novel bioactive molecules.
Journal Article
Multiple Kinase Small Molecule Inhibitor Tinengotinib (TT‐00420) Alone or With Chemotherapy Inhibit the Growth of SCLC
by
Qiang, Xiaoyan
,
Cheng, Ying
,
Peng, Peng
in
Angiogenesis
,
Animals
,
Antineoplastic Agents - pharmacology
2025
There is an urgent need to develop new targeted treatment agents for small cell lung cancer (SCLC). Tinengotinib (TT‐00420) is a novel, multi‐targeted, and spectrally selective small‐molecule kinase inhibitor that has shown significant inhibitory effects on certain solid tumors in preclinical studies. However, its role and mechanism of action in SCLC remain unclear. In this study, we demonstrated that tinengotinib effectively inhibited SCLC cell proliferation, especially highly expressing NeuroD1 (SCLC‐N), in the SCLC cell line‐derived xenograft (CDX) model and the malignant pleural effusion cell model of patients with SCLC. When combined with etoposide/cisplatin, it synergistically inhibited SCLC growth. Tinengotinib regulates proliferation, apoptosis, migration, cell cycle and angiogenesis in SCLC cells. Mechanistic studies revealed that c‐Myc expression may be a key factor influencing the effect of tinengotinib in SCLC‐N. This study provides reliable preclinical data and a new direction for tinengotinib as a promising therapy for SCLC, either alone or in combination with chemotherapy. Tinengotinib, a multi‐targeted kinase inhibitor, demonstrates significant efficacy in inhibiting small cell lung cancer (SCLC) cell proliferation, particularly in the SCLC‐N subtype with high NEUROD1 expression. When combined with etoposide/cisplatin, it synergistically suppresses SCLC growth. The study suggests tinengotinib as a promising therapeutic option, either alone or in combination with chemotherapy, addressing the urgent need for improved treatments in SCLC.
Journal Article
RHAU Peptides Specific for Parallel G-Quadruplexes: Potential Applications in Chemical Biology
2023
G-quadruplexes (G4s) are non-canonical nucleic acid structures formed by guanine (G)-rich sequences, which are ubiquitously found in the human genome and transcriptome. Targeting G4s by specific ligands provides a powerful tool to monitor and regulate G4s-associated biological processes. RHAU peptides, derived from the G4-binding motif of “RNA Helicase associated with AU-rich element” (RHAU), have emerged as extraordinary ligands for specific recognition of parallel G4s. This review highlights the significances of recent studies investigating potential applications of the engineered RHAU peptides incorporated to different functional moieties.
Journal Article
Reproductive Safety Issues of Novel Small Molecules for the Treatment of Inflammatory Bowel Disease: A Systematic Review
by
Laube, Robyn
,
Gold, Matthew
,
Carbery, Isabel
in
Care and treatment
,
Clinical trials
,
Congenital diseases
2023
Maintenance of remission during pregnancy is vital for women with inflammatory bowel disease (IBD). The antenatal safety of novel small molecules for IBD is yet to be ascertained. We aimed to describe the current evidence on reproductive data regarding small-molecule drugs. We performed a systematic review searching Embase Classic + Embase and Ovid MEDLINE for reproductive outcomes for tofacitinib, filgotinib, upadacitininb, and ozanimod. Additionally, we asked the manufacturers for available data on file regarding reproduction. We analysed data from 10 sources; six studies and four manufacturer reports were identified from our search. Significant malformation risks were reported for tofacitinib, filgotinib, upadacitininb, and ozanimod in animal studies. In 126 tofacitinib-exposed pregnancies, there were 55 live births with 2 congenital malformations and 1 serious infant infection, 14 terminations, 15 miscarriages, and 42 outcomes unknown. In 50 filgotinib-exposed pregnancies, there were 20 healthy babies, 1 congenital malformation, 9 terminations, 10 miscarriages, and 10 outcomes unknown. In 78 upadacitinib-exposed pregnancies, there were 30 healthy babies, 15 terminations, 15 miscarriages, and 18 outcomes unknown. In 60 ozanimod-exposed pregnancies, there were 31 live births with 1 congenital malformation, 1 case of intra-uterine growth restriction, 1 case of neonatal icterus, 13 terminations, 9 miscarriages, and 8 unknown outcomes. Animal data suggest significant risks of malformations for tofacitinib, filgotinib, upadacitininb, and ozanimod. Human data from clinical trials and real-world observations do not show concerning data so far, but these are very limited. Currently, alternative treatments should be used for IBD during pregnancy.
Journal Article
Discovery of a Novel Potent Antitumor Molecule, P19G1, by Erlotinib Derivative Libraries Synthesized by Modular Click-Chemistry
by
Lin, Guoqiang
,
Zhang, Fang
,
Ma, Tiancheng
in
Adenocarcinoma
,
Adenocarcinoma of Lung
,
Animal models
2022
Objective:Traditional chemical synthesis methods are cumbersome and inefficient. In this study, a novel antitumor molecule, 4-(4-(3-((6,7-bis(2-methoxyethoxy)quinazolin-4-yl)amino)phenyl)-1H-1,2,3-triazol-1-yl)phenyl sulfurofluoridate (P19G1), was identified by screening a library of Erlotinib derivatives synthesized by modular click chemistry, and the antitumor activity and underlying mechanism of P19G1 were further revealed. Methods: A series of Erlotinib derivatives (840 compounds) were synthesized using a modular click-chemistry method, and then the thiazolyl blue (MTT) method was used to screen and evaluate the inhibitory effect of these compounds on the growth and metastasis of A549 lung adenocarcinoma cells. Among them, the compound P19G1 showed the best inhibitory activity. Furthermore, the antitumor activity and mechanism of P19G1 were investigated with in vitro cell biology and in vivo assays in an animal model. Results: In vitro pharmacological studies showed that P19G1 had inhibitory effects on a variety of tumor cell lines with IC50 values in the range of 1 to 5 μM. Moreover, P19G1 significantly inhibited the proliferation and migration of the human lung adenocarcinoma cell line A549 and human colorectal cancer cell line RKO and promoted cell apoptosis. In vivo tumor-bearing mouse model experiments revealed that 50 mg/kg P19G1 effectively inhibited the growth and metastasis of A549 tumors without obvious toxicity to the host. Conclusions: The rapid structural modification of lead compounds using novel modular click-chemistry reactions holds great potential for use in obtaining diverse derivatives for tumor drug screening and development. P19G1 was discovered because of the application of click chemistry in this study, and it is an antitumor candidate molecule worthy of development.
Journal Article