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result(s) for
"opportunistic data"
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Temporal trends in the spatial bias of species occurrence records
by
Bruelheide, Helge
,
Benjamin Barth, M.
,
Henle, Klaus
in
Bias
,
Biodiversity
,
biodiversity change
2022
Large‐scale biodiversity databases have great potential for quantifying long‐term trends of species, but they also bring many methodological challenges. Spatial bias of species occurrence records is well recognized. Yet, the dynamic nature of this spatial bias – how spatial bias has changed over time – has been largely overlooked. We examined the spatial bias of species occurrence records within multiple biodiversity databases in Germany and tested whether spatial bias in relation to land cover or land use (urban and protected areas) has changed over time. We focused our analyses on urban and protected areas as these represent two well‐known correlates of sampling bias in biodiversity datasets. We found that the proportion of annual records from urban areas has increased over time while the proportion of annual records within protected areas has not consistently changed. Using simulations, we examined the implications of this changing sampling bias for estimation of long‐term trends of species' distributions. When assessing biodiversity change, our findings suggest that the effects of spatial bias depend on how it affects sampling of the underlying land‐use change drivers affecting species. Oversampling of regions undergoing the greatest degree of change, for instance near human settlements, might lead to overestimation of the trends of specialist species. For robust estimation of the long‐term trends in species' distributions, analyses using species occurrence records may need to consider not only spatial bias, but also changes in the spatial bias through time.
Journal Article
Correcting environmental sampling bias improves transferability of species distribution models
2025
Sampling bias is an inherent problem in widely available biodiversity data, undermining the robustness of correlative species distribution models (SDMs). To some extent, subsampling occurrence data can account for uneven sampling efforts; yet, conventional approaches subsample in geographical space, while subsampling in environmental space remains underexplored. Here, we compared the effectiveness of subsampling methods that correct sampling bias either in geographical space (spatial gridding, spatial distance thinning) or directly in environmental space (environmental gridding), including two novel approaches introduced here: environmental clustering and environmental distance thinning. We hypothesised that environmental subsampling methods would be more effective in improving SDM performance across its three primary uses: explaining, predicting, and projecting. Using a virtual ecologist framework, we assessed SDM performance against four evaluation tests: replicating true species–environment response curves, predicting within the sampling region via internal cross‐validation and evaluation against independent data, and projecting outside the sampling region. Our findings demonstrate that environmental subsampling methods, especially environmental clustering and environmental distance thinning, outperformed other methods in yielding robust SDMs in almost all evaluation tests. Interestingly, cross‐validation favoured SDMs with no sampling bias correction, highlighting the inability of cross‐validation to identify unbiased models. Our findings emphasise a critical conceptual disconnect: SDMs appearing to perform well in predicting species' distributions may not reliably estimate species–environment relationships, nor transfer predictions onto novel environments. Environmental subsampling methods are reliable approaches for all uses, but are particularly suited for explaining species' niches and transferring predictions across space and/or time, such as when anticipating species' responses to climate change or assessing the risk of biological invasions. Conversely, geographic subsampling methods may suffice for predicting species' distributions within their current environmental context, as required in conservation planning. Our study firmly establishes the critical importance of correcting environmental sampling bias, while also providing reliable solutions for supporting biodiversity conservation in an ever‐changing world.
Journal Article
Turning observations into biodiversity data: Broadscale spatial biases in community science
2023
Biodiversity community science projects are growing rapidly in popularity. The enormous amounts of data generated by these programs are transforming how we conduct ecological research and conservation management. However, as with other biodiversity surveys, community science datasets suffer from biases in time and locations of observations. To better use these data, we modeled the spatial biases present in the popular community science platform, iNaturalist. iNaturalist uses crowdsourcing to collect georeferenced and time‐stamped observations of all taxa worldwide. With its wealth of biodiversity data, iNaturalist is now being used to answer a broad range of questions in ecology and conservation, but little is known about the platform's spatial biases. We focus on the more than 1.75 million iNaturalist observations available (as of December 2021) from British Columbia, Canada, a region with a strong community science presence and diversity of ecosystems. Using machine learning and species distribution modeling, we examined which landscape factors (e.g., protected areas, roads, human population density, habitat zones, elevation) were most important in determining where observations are taken, and we created a predicted probability map revealing how likely different regions are to be sampled by community scientists. We found strong road biases for observations in iNaturalist, with over 94% of observations within 1 km of roads. In addition, human population density and broad habitat ecosystem zones played a large role in predicting where iNaturalist observations occur across the landscape. These methods demonstrate tools for modeling the effects of spatial biases in large opportunistic datasets that can then be used to produce more accurate species distribution and biodiversity models from community science data.
Journal Article
Opportunistic Sensor Data Collection with Bluetooth Low Energy
2017
Bluetooth Low Energy (BLE) has gained very high momentum, as witnessed by its widespread presence in smartphones, wearables and other consumer electronics devices. This fact can be leveraged to carry out opportunistic sensor data collection (OSDC) in scenarios where a sensor node cannot communicate with infrastructure nodes. In such cases, a mobile entity (e.g., a pedestrian or a vehicle) equipped with a BLE-enabled device can collect the data obtained by the sensor node when both are within direct communication range. In this paper, we characterize, both analytically and experimentally, the performance and trade-offs of BLE as a technology for OSDC, for the two main identified approaches, and considering the impact of its most crucial configuration parameters. Results show that a BLE sensor node running on a coin cell battery can achieve a lifetime beyond one year while transferring around 10 Mbit/day, in realistic OSDC scenarios.
Journal Article
New technologies can support data collection on endangered shark species in the Mediterranean Sea
by
Leone, Agostino
,
Moro, Stefano
,
Giovos, Ioannis
in
Abundance
,
Aggregation
,
Alopias superciliosus
2022
In the last 50 yr, shark populations showed steep declines in the Mediterranean Sea. The IUCN lists most Mediterranean species as threatened (55%), while considering 27.5% of them Data Deficient. Here, sharks are currently one of the rarest and more elusive groups of animals, and data from fisheries and scientific monitoring still insufficiently support robust abundance and distribution assessments. New technologies can fill this data gap by linking people and scientists through new monitoring strategies. SharkPulse, an international collaborative project, aims at creating a large world database of shark occurrence records by mining images on the web, social networks, and private archives. Here we analyzed 1186 sharkPulse records from the Mediterranean Sea. We collected records to characterize spatio-temporal patterns on 37 species, highlighting distribution changes for 5, and, by using generalized linear models, estimating trends in sighting for the most abundant species. With 273 records, Hexanchus griseus had the most sighting records since the beginning of the series. We identified pupping areas and aggregation sites for immature Prionace glauca and Isurus oxyrinchus; pinpointed strongholds of the Critically Endangered Squatina squatina to focus conservation efforts; and identified broader than previously reported regional distribution ranges for Alopias superciliosus, Dalatias licha, Heptranchias perlo, H. griseus, Oxynotus centrina, and P. glauca. We confirmed that fishing is still the major threat for Mediterranean sharks and call for a greater effort in controlling the emerging patterns with efficient conservation effort indexes. If properly standardized, opportunistic data can efficiently and cost-effectively advance our understanding of shark abundance, distribution, and conservation status.
Journal Article
Capitalizing on opportunistic data for monitoring relative abundances of species
2016
With the internet, a massive amount of information on species abundance can be collected by citizen science programs. However, these data are often difficult to use directly in statistical inference, as their collection is generally opportunistic, and the distribution of the sampling effort is often not known. In this article, we develop a general statistical framework to combine such \"opportunistic data\" with data collected using schemes characterized by a known sampling effort. Under some structural assumptions regarding the sampling effort and detectability, our approach makes it possible to estimate the relative abundance of several species in different sites. It can be implemented through a simple generalized linear model. We illustrate the framework with typical bird datasets from the Aquitaine region in south-western France. We show that, under some assumptions, our approach provides estimates that are more precise than the ones obtained from the dataset with a known sampling effort alone. When the opportunistic data are abundant, the gain in precision may be considerable, especially for rare species. We also show that estimates can be obtained even for species recorded only in the opportunistic scheme. Opportunistic data combined with a relatively small amount of data collected with a known effort may thus provide access to accurate and precise estimates of quantitative changes in relative abundance over space and/or time.
Journal Article
Integrating counts from rigorous surveys and participatory science to better understand spatiotemporal variation in population processes
2024
Knowledge of variation in population processes (e.g. population growth) across broad spatiotemporal scales is fundamental to population ecology and critical for conservation decision‐making. Count data from rigorous surveys (e.g. surveys with probabilistic sampling design and distance sampling information) can inform population processes but are often limited in space and time. Participatory science data cover broader spatiotemporal extents but are prone to bias due to limited to no sampling design and lack of distance sampling information, hindering their capability of informing population processes. Here, we developed an integrated dynamic N‐mixture model that jointly analyses rigorous survey and participatory science data to inform population growth at broad spatiotemporal extents. The model contains a flexible scaling parameter that allows fixed and random effects to account for biases and errors in participatory science data. We conducted simulations to evaluate the inference performance of this model across a broad range of spatial and temporal overlap between rigorous survey and participatory science data. We also conducted a case study of Baird's Sparrow (Centronyx bairdii), a species of conservation concern, to illustrate the application of the integrated model with rigorous survey data from the Integrated Monitoring in Bird Conservation Regions programme and participatory science North American Breeding Bird Survey and eBird data. Simulations showed that the integrated model improved precision without biasing parameter estimates, in comparison with a model informed by rigorous survey data alone. The case study further demonstrated the utility of the integrated model for quantifying range‐wide, long‐term population processes and environmental drivers despite limited spatiotemporal extent of rigorous survey data. In particular, we found that population growth rate peaked under medium temperature, which were only apparent in the integrated model. The integrated model developed in this study is useful for understanding wildlife population processes at broad spatiotemporal scales with count data. The flexible structure of this model, in particular the scaling parameter, makes it highly adaptable to a broad range of ecological systems and survey procedures. These properties make this modelling approach highly relevant for both population ecology and conservation practice.
Journal Article
Evaluating citizen vs. professional data for modelling distributions of a rare squirrel
by
Tye, Courtney A.
,
Greene, Daniel U.
,
Fletcher, Robert J.
in
biogeography
,
Citizen science
,
Conservation
2017
1. To realize the potential of citizens to contribute to conservation efforts through the acquisition of data for broad-scale species distribution models, scientists need to understand and minimize the influences of commonly observed sample selection bias on model performance. Yet evaluating these data with independent, planned surveys is rare, even though such evaluation is necessary for understanding and applying data to conservation decisions. 2. We used the state-listed fox squirrel Sciurus niger in Florida, USA, to interpret the performance of models created with opportunistic observations from citizens and professionals by validating models with independent, planned surveys. 3. Data from both citizens and professionals showed sample selection bias with more observations within 50 m of a road. While these groups showed similar sample selection bias in reference to roads, there were clear differences in the spatial coverage of the groups, with citizens observing fox squirrels more frequently in developed areas. 4. Based on predictions at planned field surveys sites, models developed from citizens generally performed similarly to those developed with data collected by professionals. Accounting for potential sample selection bias in models, either through the use of covariates or via aggregating data into home range size grids, provided only slight increases in model performance. 5. Synthesis and applications. Despite sample selection biases, over a broad spatial scale opportunistic citizen data provided reliable predictions and estimates of habitat relationships needed to advance conservation efforts. Our results suggest that the use of professionals may not be needed in volunteer programmes used to determine the distribution of species of conservation interest across broad spatial scales.
Journal Article
Identifying and correcting spatial bias in opportunistic citizen science data for wild ungulates in Norway
by
Linnell, John D. C.
,
Rolandsen, Christer M.
,
Cretois, Benjamin
in
Availability
,
Bias
,
Biotelemetry
2021
Many publications make use of opportunistic data, such as citizen science observation data, to infer large‐scale properties of species’ distributions. However, the few publications that use opportunistic citizen science data to study animal ecology at a habitat level do so without accounting for spatial biases in opportunistic records or using methods that are difficult to generalize. In this study, we explore the biases that exist in opportunistic observations and suggest an approach to correct for them. We first examined the extent of the biases in opportunistic citizen science observations of three wild ungulate species in Norway by comparing them to data from GPS telemetry. We then quantified the extent of the biases by specifying a model of the biases. From the bias model, we sampled available locations within the species’ home range. Along with opportunistic observations, we used the corrected availability locations to estimate a resource selection function (RSF). We tested this method with simulations and empirical datasets for the three species. We compared the results of our correction method to RSFs obtained using opportunistic observations without correction and to RSFs using GPS‐telemetry data. Finally, we compared habitat suitability maps obtained using each of these models. Opportunistic observations are more affected by human access and visibility than locations derived from GPS telemetry. This has consequences for drawing inferences about species’ ecology. Models naïvely using opportunistic observations in habitat‐use studies can result in spurious inferences. However, sampling availability locations based on the spatial biases in opportunistic data improves the estimation of the species’ RSFs and predicted habitat suitability maps in some cases. This study highlights the challenges and opportunities of using opportunistic observations in habitat‐use studies. While our method is not foolproof it is a first step toward unlocking the potential of opportunistic citizen science data for habitat‐use studies. We provide a novel method to use citizen science data for fine‐scale studies.
Journal Article
Collecting and utilising crowdsourced data for numerical weather prediction: Propositions from the meeting held in Copenhagen, 4–5 December 2018
by
Sass, Bent
,
O'Boyle, Katharine
,
Korsholm, Ulrik S.
in
Atmospheric sciences
,
Bias
,
citizen science
2019
In December 2018, the Danish Meteorological Institute organised an international meeting on the subject of crowdsourced data in numerical weather prediction (NWP) and weather forecasting. The meeting, spanning 2 days, gathered experts on crowdsourced data from both meteorological institutes and universities from Europe and the United States. Scientific presentations highlighted a vast array of possibilities and progress being made globally. Subjects include data from vehicles, smartphones, and private weather stations. Two groups were created to discuss open questions regarding the collection and use of crowdsourced data from different observing platforms. Common challenges were identified and potential solutions were discussed. While most of the work presented was preliminary, the results shared suggested that crowdsourced observations have the potential to enhance NWP. A common platform for sharing expertise, data, and results would help crowdsourced data realise this potential. In December 2018, the Danish Meteorological Institute organised an international meeting on the subject of crowdsourced data in numerical weather prediction (NWP) and weather forecasting. The meeting, spanning 2 days, gathered experts on crowdsourced data from both meteorological institutes and universities from Europe and the United States. It was concluded that crowdsourced observations are likely to be useful for NWP. Finally, it is recommended that a platform for sharing thoughts, data and results is worked upon moving forward.
Journal Article