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Soil organic nitrogen (N) is a critical resource for plants and microbes, but the processes that govern its cycle are not well-described. To promote a holistic understanding of soil N dynamics, we need an integrated model that links soil organic matter (SOM) cycling to bioavailable N in both unmanaged and managed landscapes, including agroe-cosystems. We present a framework that unifies recent conceptual advances in our understanding of three critical steps in bioavailable N cycling: organic N (ON) depolymerization and solubilization; bioavailable N sorption and desorption on mineral surfaces; and microbial ON turnover including assimilation, mineralization, and the recycling of microbial products. Consideration of the balance between these processes provides insight into the sources, sinks, and flux rates of bioavailable N. By accounting for interactions among the biological, physical, and chemical controls over ON and its availability to plants and microbes, our conceptual model unifies complex mechanisms of ON transformation in a concrete conceptual framework that is amenable to experimental testing and translates into ideas for new management practices. This framework will allow researchers and practitioners to use common measurements of particulate organic matter (POM) and mineral-associated organic matter (MAOM) to design strategic organic N-cycle interventions that optimize ecosystem productivity and minimize environmental N loss.

Understanding how ecosystems store or release carbon is one of ecology's greatest challenges in the 21st century. Organic matter covers a large range of chemical structures and qualities, and it is classically represented by pools of different recalcitrance to degradation. The interaction effects of these pools on carbon cycling are still poorly understood and are most often ignored in global-change models. Soil scientists have shown that inputs of labile organic matter frequently tend to increase, and often double, the mineralization of the more recalcitrant organic matter. The recent revival of interest for this phenomenon, named the priming effect, did not cross the frontiers of the disciplines. In particular, the priming effect phenomenon has been almost totally ignored by the scientific communities studying marine and continental aquatic ecosystems. Here we gather several arguments, experimental results, and field observations that strongly support the hypothesis that the priming effect is a general phenomenon that occurs in various terrestrial, freshwater, and marine ecosystems. For example, the increase in recalcitrant organic matter mineralization rate in the presence of labile organic matter ranged from 10% to 500% in six studies on organic matter degradation in aquatic ecosystems. Consequently, the recalcitrant organic matter mineralization rate may largely depend on labile organic matter availability, influencing the CO 2 emissions of both aquatic and terrestrial ecosystems. We suggest that (1) recalcitrant organic matter may largely contribute to the CO 2 emissions of aquatic ecosystems through the priming effect, and (2) priming effect intensity may be modified by global changes, interacting with eutrophication processes and atmospheric CO 2 increases. Finally, we argue that the priming effect acts substantially in the carbon and nutrient cycles in all ecosystems. We outline exciting avenues for research, which could provide new insights on the responses of ecosystems to anthropogenic perturbations and their feedbacks to climatic changes.

Much research focuses on increasing carbon storage in mineral-associated organic matter (MAOM), in which carbon may persist for centuries to millennia. However, MAOM-targeted management is insufficient because the formation pathways of persistent soil organic matter are diverse and vary with environmental conditions. Effective management must also consider particulate organic matter (POM). In many soils, there is potential for enlarging POM pools, POM can persist over long time scales, and POM can be a direct precursor of MAOM. We present a framework for context-dependent management strategies that recognizes soils as complex systems in which environmental conditions constrain POM and MAOM formation. Increasing C storage in mineral-associated organic matter is insufficient due to diverse, environmentally specific persistent soil organic matter formation. Context-dependent management strategies highlighting the importance of particulate organic matter are necessary.

Effective land-based solutions to climate change mitigation require actions that maximize soil carbon storage without generating surplus nitrogen. Land management for carbon sequestration is most often informed by bulk soil carbon inventories, without considering the form in which carbon is stored, its capacity, persistency and nitrogen demand. Here, we present coupling of European-wide databases with soil organic matter physical fractionation to determine continental-scale forest and grassland topsoil carbon and nitrogen stocks and their distribution between mineral-associated and particulate organic matter pools. Grasslands and arbuscular mycorrhizal forests store more soil carbon in mineral-associated organic carbon, which is more persistent but has a higher nitrogen demand and saturates. Ectomycorrhizal forests store more carbon in particulate organic matter, which is more vulnerable to disturbance but has a lower nitrogen demand and can potentially accumulate indefinitely. The share of carbon between mineral-associated and particulate organic matter and the ratio between carbon and nitrogen affect soil carbon stocks and mediate the effects of other variables on soil carbon stocks. Understanding the physical distribution of organic matter in pools of mineral-associated versus particulate organic matter can inform land management for nitrogen-efficient carbon sequestration, which should be driven by the inherent soil carbon capacity and nitrogen availability in ecosystems.

Aims Long-term application of organic materials has been shown to significantly enhance the content of soil organic matter (SOM), underscoring the critical need to examine the components of soil organic carbon for a deeper understanding of SOM functionalities. Thus, the structural changes and microbial driving mechanisms of water extractable organic matter (WEOM), fulvic acid (FA) and humic acid (HA) were investigated in black soil by a long-term fertilization experiment. Methods This 33-year experiment comprises five treatments: no fertilizer (CK), chemical fertilizer (NPK), chemical fertilizer with low-rate straw (NPKJ1), chemical fertilizer with high-rate straw (NPKJ2), and chemical fertilizer with organic manure (NPKM). We also conducted a detailed study of WEOM, FA, HA, and the microbial community structure in both the 0–20 cm and 20–40 cm soil layers. Results Our findings indicate that organic material application primarily sourced WEOM, FA, and HA from microbial metabolism and plant-derived origins, exhibiting humus and aromatization characteristics with high molecular weight. WEOM was rich in fulvic acid-like and humic acid-like compounds, while FA and HA contained more protein-like components. Organic material use altered WEOM, FA, and HA structures by impacting soil microbial biomass carbon (MBC) and fungal/bacterial biomass. In 0–20 cm soil layer, SOM content was mainly influenced by humus, especially the HA fraction, whereas in 20–40 cm soil layer, it was predominantly affected by WEOM. Conclusions The present study emphasizes that the application of organic materials can influence the structure of microbial communities, thereby affecting the composition of WEOM, FA, and HA, consequently influencing the organic matter content in different soil layers.

Pyrogenic organic matter (PyOM) is considered an important soil carbon (C) sink. However, there are evidences that its addition to soil may induce a priming effect (PE) thus influencing its C abatement potential. The direction, the size and the mechanisms responsible for PyOM induced PE are far from being understood. We collected approximately 650 data points from 18 studies to analyse the characteristics of the PE induced by PyOM. The database was divided between the PE induced on the native soil organic matter and on fresh organic matter. Most of the studies were short‐term incubation therefore the projections of findings on the long term may be critical. Our findings indicate that over 1 year PyOM induces an average positive PE of 0.3 mg C g−1 soil on native soil organic matter and a PE of approximately the same size but opposite direction on fresh organic matter. We studied the correlation of PE with several properties of soil, of the added PyOM, and time after PyOM addition. We found that PyOM primes positively the native soil organic matter in the first 20 days while negative PE appears in a later stage. Negative PE was correlated with the soil C content. PyOM characterized by a low C content induced a higher positive PE on native soil organic carbon. No correlation was found between the factors record in our database and the PE induced on the fresh organic matter. We reviewed the mechanisms proposed in literature to explain PE and discussed them based on findings from our meta‐analysis. We believe that the presence of a labile fraction in PyOM may trigger the activity of soil microorganisms on the short term and therefore induce a positive PE, while on the long term PyOM may induce a negative PE by promoting physical protection mechanisms.

Dissolved organic matter affects fundamental biogeochemical processes in the soil such as nutrient cycling and organic matter storage. The current paradigm is that processing of dissolved organic matter converges to recalcitrant molecules (those that resist degradation) of low molecular mass and high molecular diversity through biotic and abiotic processes. Here we demonstrate that the molecular composition and properties of dissolved organic matter continuously change during soil passage and propose that this reflects a continual shifting of its sources. Using ultrahigh-resolution mass spectrometry and nuclear magnetic resonance spectroscopy, we studied the molecular changes of dissolved organic matter from the soil surface to 60 cm depth in 20 temperate grassland communities in soil type Eutric Fluvisol. Applying a semi-quantitative approach, we observed that plant-derived molecules were first broken down into molecules containing a large proportion of low-molecular-mass compounds. These low-molecular-mass compounds became less abundant during soil passage, whereas larger molecules, depleted in plant-related ligno-cellulosic structures, became more abundant. These findings indicate that the small plant-derived molecules were preferentially consumed by microorganisms and transformed into larger microbial-derived molecules. This suggests that dissolved organic matter is not intrinsically recalcitrant but instead persists in soil as a result of simultaneous consumption, transformation and formation.

Plant litter quality considerably affects C accrual in soil organic matter (SOM). However, the chemical traits of litter that influence C distribution in SOM fractions, such as particulate organic matter (POM) and mineral-associated organic matter (MAOM), are not fully understood. Thus, we conducted a 150-day incubation experiment with litter addition (poplar leaves, roots, grasses grown under the canopy, and a mixture of these three litter types). We analyzed the organic C concentration in the POM and MAOM fractions and the stoichiometric ratios (C:N:P) of the soil and microbial biomass 50, 100, and 150 days after the initial litter addition. Microbial residue C (amino sugar biomarkers) in SOM fractions was registered at the end of decomposition. High-quality litter (i.e., leaf) increased MAOM-C accrual, and low-quality litter (i.e., root and grass) contributed more to POM-C accrual. The mixed litter addition accumulated more C in the SOM via high POM-C levels compared to single litter input, likely resulting from an antagonistic effect caused by different litter trait dissimilarity. Moreover, POM-C dynamics were dominated by litter chemical traits during litter decomposition, and MAOM-C was controlled mainly by microbial and soil stoichiometry. Furthermore, the contribution of microbial residue C to SOM (especially POM-C) was lower in the mixed litter than in the single litter. These findings highlight the direct or indirect impacts of litter types on the C dynamics of POM and MAOM, and demonstrate that litter diversity is conducive to C accumulation in SOM.

The identification of phosphorus (P) fractions is essential for understanding the transformation and availability of P in paddy soils. To investigate the soil P fractions associated with soil properties under long-term fertilization, we selected three fertilization treatments, including no fertilization (CK), chemical fertilizers (NPK) and chemical fertilizers combined with manure (NPKM), from three long-term experiments located in Nanchang (NC), Jinxian (JX) and Ningxiang (NX). The results showed that chemical fertilizers combined with manure (NPKM) significantly (P ≤ 0.05) increased the soil total phosphorus, Olsen P and soil organic matter (SOM) by 2, 3 and 1 times, respectively, compared with the NPK treatment, and by 4, 17 and 2 times, respectively, compared with the CK treatment. NPKM significantly increased the grain yield compared with CK and NPK at all sites. The apparent P balance with NPK was higher in NC and NX but lower in JX compared with NPKM. Hedley fractionation revealed the predominance of most of the organic and inorganic phosphorus (Po and Pi) fractions with long-term fertilization, especially with the NPKM treatment, at all sites. The nonlabile P pool decreased by 14% and 18% whereas the moderately labile P pool proportions increased by 3 and 6 times with the NPK and NPKM treatments, respectively, compared to the CK treatment. The labile P pool showed a significant positive relationship with the SOM, total P and Olsen P contents. The moderately labile P was positively correlated with the total P and Olsen P. A significant positive correlation was observed between soil pH and the nonlabile P pool. Redundancy analysis revealed that the moderately labile P fraction (HCl dil. Pi fraction) was remarkably increased by the NPKM treatment and significantly correlated with the soil pH and total P concentration. The labile P fraction (NaHCO3-Pi) showed a strong relationship with the Olsen P and total P. However, the residual P fraction was negatively correlated with the HCl. dil. Pi fraction. We concluded that NPKM application improved P availability by many folds compared to NPK, which could lead to environmental pollution; therefore, the rate of combined application of manure and chemical fertilizer should be reduced compared to chemical fertilizer inputs to minimize the wastage of resources and environmental P losses.

The impact of human activities on the concentrations and composition of dissolved organic matter (DOM) and particulate organic matter (POM) was investigated in the Walloon Region of the Meuse River basin (Belgium). Water samples were collected at different hydrological periods along a gradient of human disturbance (50 sampling sites ranging from 8.0 to 20,407 km²) and during a 1.5 year monitoring of the Meuse River at the city of Liège. This dataset was completed by the characterization of the DOM pool in groundwaters. The composition of DOM and POM was investigated through elemental (C:N ratios), isotopic (δ¹³C) and optical measurements including excitation emission matrix fluorescence with parallel factor analysis (EEM–PARAFAC). Land use was a major driver on fluvial OM composition at the regional scale of the Meuse Basin, the composition of both fluvial DOM and POM pools showing a shift toward a more microbial/algal and less plant/soil-derived character as human disturbance increased. The comparison of DOM composition between surface and groundwaters demonstrated that this pattern can be attributed in part to the transformation of terrestrial sources by agricultural practices that promote the decomposition of soil organic matter in agricultural lands and subsequent microbial inputs in terrestrial sources. In parallel, human land had contrasting effects on the autochthonous production of DOM and POM. While the in-stream generation of fresh DOM through biological activity was promoted in urban areas, summer autochthonous POM production was not influenced by land use. Finally, soil erosion by agricultural management practices favored the transfer of terrestrial organic matter via the particulate phase. Stable isotope data suggest that the hydrological transfer of terrestrial DOM and POM in humanimpacted catchment are not subject to the same controls, and that physical exchange between these two pools of organic matter is limited.