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The delineation of species and their evolutionary relationships informs our understanding of biogeography and how regional faunas are assembled. The peripheral geography and local environment of reefs in the subtropical South Pacific likely promotes the allopatric and adaptive divergence of taxa colonising from the tropics; however, the fauna of this region has been relatively understudied. Here, we address the taxonomic and evolutionary relationships among Chrysiptera taxa of the subtropical South Pacific. We use meristic counts, morphometrics and genetic markers to characterise the similarities and differences among four taxa restricted to the South Pacific region that have strikingly different colouration: C. notialis, a taxon restricted to eastern Australia, New Caledonia, Lord Howe Island and Norfolk Island; C. galba, found in the Cook Islands, southern French Polynesia and Pitcairn Islands; and the two disjunct populations of C. rapanui, found in the eastern Pacific around Rapa Nui (Isla de Pascua or Easter Island) and Motu Motiro Hiva (Salas y Gómez) and in the South-western Pacific around Rangitāhua (Kermadec Islands). Our morphometric analysis confirmed that these four taxa, including the two disjunct populations of C. rapanui, are morphologically distinct. However, our genetic analysis revealed that only C. rapanui from Rapa Nui was genetically differentiated, whereas C. rapanui of Rangitāhua, C. galba and C. notialis all shared a common haplotype. Furthermore, none of the taxa could be consistently differentiated based on individual meristic features. Our study reconciles a formerly perplexing and disjunct distribution for C. rapanui, to reveal that C. rapanui is an endemic of Rapa Nui and that the Chrysiptera of French Polynesia, Rangitāhua, and the South-western Pacific have only a very recent history of divergence. Our analyses suggest these subtropical taxa have diverged from a predominantly tropical Chrysiptera genus in morphological features important in determining colonisation success, locomotion and feeding ecology.

Anthropogenic global change is impacting the evolutionary potential of biodiversity in ways that have been difficult to predict. Distinct evolutionary units within species may respond differently to the same environmental trends, reflecting unique geography, ecology, adaptation, or drift. Least shrews (Cryptotis parvus group) have a widespread distribution across North America, yet systematic relationships and ongoing evolutionary processes remain unresolved. Westernmost peripheral populations have been prioritized for conservation, but little is known of their evolutionary histories or population trajectories. The broad range of this group of species is coincident with many other temperate taxa, presenting a hypothesis that diversification of least shrews follows a repeated process through the Pleistocene, leading to regionally diagnosable conservation units. We use genomic data and niche modeling to delimit species and conservation units of least shrews. Our results show that least shrews warrant recognition as multiple distinct species, along with geographically discrete infraspecific lineages of C. parvus (sensu stricto). Western peripheral populations are evolutionarily distinct based on nuclear, but not mitochondrial data, possibly reflecting mitochondrial capture during the last glacial phase. This population represents a relict conservation unit, consistent with both an “adaptive unit” and “management unit” based on non‐neutral and neutral divergence, respectively. Hindcast niche modeling supports growing evidence for a shared process of diversification among co‐distributed biota, and forecast modeling suggests continued future loss of suitable environmental niche in peripheral regions. Given mito‐nuclear discordance among samples of parapatric lineages, future environmental perturbation may continue to impact the genomic integrity of important conservation units, making ecological and genomic monitoring a critical need. Least shrews, distributed widely across North America and Mesoamerica, remain an enigmatic group in terms of their evolutionary history, biogeography, and ongoing responses to environmental change. Under a phylogenomic framework using reduced representation genome data, we investigated these dynamics across multiple scales of analysis. We found that the current taxonomy is in need of revision and provide updated nomenclature, systematic relationships, and conservation implications. This group provides a clear demonstration of diagnosable diversification across this vast study area.

Among Atlantic scleractinian corals, species diversity is highest in the Caribbean, but low diversity and high endemism are observed in various peripheral populations in central and eastern Atlantic islands and along the coasts of Brazil and West Africa. The degree of connectivity between these distantly separated populations is of interest because it provides insight into processes at both evolutionary and ecological time scales, such as speciation, recruitment dynamics and the persistence of coral populations. To assess connectivity in broadly distributed coral species of the Atlantic, DNA sequence data from two nuclear markers were obtained for six coral species spanning their distributional ranges. At basin-wide scales, significant differentiation was generally observed among populations in the Caribbean, Brazil and West Africa. Concordance of patterns in connectivity among co-distributed taxa indicates that extrinsic barriers, such as the Amazon freshwater plume or long stretches of open ocean, restrict dispersal of coral larvae from region to region. Within regions, dispersal ability appears to be influenced by aspects of reproduction and life history. Two broadcasting species, Siderastrea siderea and Montastraea cavernosa, were able to maintain gene flow among populations separated by as much as 1,200 km along the coast of Brazil. In contrast, brooding species, such as Favia gravida and Siderastrea radians, had more restricted gene flow along the Brazilian coast.

Early detection of Mycobacterium leprae is a key strategy for disrupting the transmission chain of leprosy and preventing the potential onset of physical disabilities. Clinical diagnosis is essential, but some of the presented symptoms may go unnoticed, even by specialists. In areas of greater endemicity, serological and molecular tests have been performed and analyzed separately for the follow-up of household contacts, who are at high risk of developing the disease. The accuracy of these tests is still debated, and it is necessary to make them more reliable, especially for the identification of cases of leprosy between contacts. We proposed an integrated analysis of molecular and serological methods using artificial intelligence by the random forest (RF) algorithm to better diagnose and predict new cases of leprosy. The study was developed in Governador Valadares, Brazil, a hyperendemic region for leprosy. A longitudinal study was performed, including new cases diagnosed in 2011 and their respective household contacts, who were followed in 2011, 2012, and 2016. All contacts were diligently evaluated by clinicians from Reference Center for Endemic Diseases (CREDEN-PES) before being classified as asymptomatic. Samples of slit skin smears (SSS) from the earlobe of the patients and household contacts were collected for quantitative polymerase chain reaction (qPCR) of 16S rRNA, and peripheral blood samples were collected for ELISA assays to detect LID-1 and ND-O-LID. The statistical analysis of the tests revealed sensitivity for anti-LID-1 (63.2%), anti-ND-O-LID (57.9%), qPCR SSS (36.8%), and smear microscopy (30.2%). However, the use of RF allowed for an expressive increase in sensitivity in the diagnosis of multibacillary leprosy (90.5%) and especially paucibacillary leprosy (70.6%). It is important to report that the specificity was 92.5%. The proposed model using RF allows for the diagnosis of leprosy with high sensitivity and specificity and the early identification of new cases among household contacts.

In anticipation of the current biodiversity crisis, it has become critical to rapidly and accurately assess biodiversity. DNA barcoding has proved efficient in facilitating the discovery and description of thousands of species and also provides insight into the dynamics of biodiversity. Here, we sequenced a portion of the mitochondrial cytochrome c oxidase subunit I (COI) gene from all morphospecies of reef brittle stars collected during a large-scale biodiversity survey in the southwestern Indian Ocean (SWIO). Three methods of species delineation (Automatic Barcode Gap Discovery, Generalized Mixed Yule Coalescent model, and Bayesian Poisson Tree Processes) showed concordant results and revealed 51 shallow reef species in the region. Mean intraspecific genetic distances (0.005–0.064) and mean interspecific genetic distances within genera (0.056–0.316) were concordant with previous echinoderm studies. This study revealed that brittle-star biodiversity is underestimated by 20% within SWIO and by >40% when including specimens from the Pacific Ocean. Results are discussed in terms of endemism, diversification processes, and conservation implications for the Indo-West Pacific marine biodiversity. We emphasize the need to further our knowledge on biodiversity of invertebrate groups in peripheral areas.

. Persistence by longevity has been rarely considered as an alternative to regeneration by seeding for plants showing multiple demographic strategies. We propose a conceptual model of multiple demographic strategies for long‐lived plants in stable habitats, shifting from regeneration by seeding to persistence by longevity and/or vegetative reproduction, along gradients of abiotic stress or interspecific competition. Regeneration by seeding would be promoted under low abiotic stress or under low competition, whereas persistence by longevity and/or vegetative reproduction would predominate at high levels of abiotic stress or competition. We test this model with two threatened species of the Mediterranean region, the shrub Juniperus communis, a widely distributed species which maintains relict populations in the Mediterranean mountains thanks to great adult longevity and Pinguicula vallisneriifolia, a palaeo‐endemic herb relying on a perennial habit and vegetative reproduction under drought imposed stress or high competition at late successional phases. As a main consequence, multiple demographic strategies enhance a plant's ability to exploit environmental heterogeneity at different spatial (patches, localities, regions within the species’ distribution area) and temporal (individual life span, glacial‐interglacial cycles) scales. The potential of multiple demographic dynamics based on persistence and regeneration must be considered as a major ecological trait determining the long‐term viability of peripheral populations of relict species as well as the inertia against extinction of many threatened endemisms, thereby contributing to the maintenance of the high plant diversity characterizing the Mediterranean region.

Populations at the periphery of a species' range are of interest to conservation biologists because they can show marked genetic differentiation from populations at the center of a range and because of potential hybridization among rare and common species. We examined two closely related Cyclamen species. One is a narrow endemic, and the other is more geographically widespread (both protected by law in continental southern France). We used floral traits and genetic variability to test for hybridization among the species in peripheral populations of the rare species. The species co-occurred on Corsica in a disjunct, peripheral part of the distribution of the endemic species and in an ecologically marginal area for the widespread species. The two species have hybridized and the endemic species showed high levels of introgression with its widespread congener. Genetic and floral variability in sites with both species was markedly higher than in sites with a single species. Our results highlight the need for a conservation strategy that integrates hybrid populations because they represent a source of novel diversity that may have adaptive potential.

Abstract Endemism in mountain ranges is considered to be the result of a number of factors, including restriction to refugia during Pleistocene climate fluctuations. However, isolation in glacial refugia cannot explain the origin of narrowly endemic taxa restricted to formerly heavily glaciated areas. Here, we investigate the phylogeny of two narrowly endemic species, Euphrasia inopinata and E. sinuata (Orobanchaceae), found exclusively in formerly heavily glaciated areas of the eastern European Alps. As both species are diploid and very similar to the widespread (allo)polyploid E. minima, we test whether the restricted distributions of E. inopinata and E. sinuata are relictual, i.e. the two species are ancestral diploid remnants of a polyploid complex, or whether they are derived, i.e. the two species are peripheral segregates of a more widespread diploid. Based on internal transcribed spacer (ITS) sequence and amplified fragment length polymorphism (AFLP) fingerprint data it is shown that E. inopinata and E. sinuata, whose diploid ploidy level is confirmed for all analysed individuals via flow cytometry, are phylogenetically closely related to diploid E. alpina s. l. (series Alpinae) instead of E. minima (series Parviflorae). In addition, there is no evidence that these two diploid species participated in the formation of allotetraploid E. minima. Thus, E. inopinata and E. sinuata are interpreted as peripheral segregates of the widespread E. alpina s. l. Shifts in pollination system from allogamy in E. alpina s. l. to autogamy in E. inopinata and E. sinuata, genetic drift in small populations and geographic isolation at the periphery of the range of E. alpina s. str. probably contributed to the morphological and ecological differentiation of E. inopinata and E. sinuata. The origin of range-restricted diploid species confined to formerly heavily glaciated areas is little understood. A suitable system to address this question is a group of two autogamous eyebright species, Euphrasia inopinata and E. sinuata, each known only from a few sites in the eastern European Alps. Previous hypotheses suggested these species to be either remnants of the diploid ancestor of the equally autogamous but widespread and polyploid E. minima or as peripheral segregates of a more widespread allogamous diploid species.

Jens C. Clausen, David D. Keck, and William M. Hiesey's biosystematic research on continental tarweeds (Madiinae; Compositae) provided diverse examples of evolutionary change for Clausen's synthesis, Stages in the Evolution of Plant Species. Subsequent anatomical work by Sherwin Carlquist demonstrated that the tarweed lineage also includes a spectacular example of adaptive radiation, the Hawaiian silversword alliance. Molecular phylogenetic data and evidence from genetic and hybridization studies have allowed additional perspectives on Clausen et al.'s and Carlquist's hypotheses of tarweed–silversword evolution. In Californian Layia, Clausen et al.'s evidence for gradual allopatric diversification for the n = 7 taxa accords with patterns of molecular divergence and decay of interfertility across lineages inferred from a rate-constant rDNA tree. In contrast, recent evidence on patterns and timing of diversification in an n = 8 Layia clade indicates multiple examples of accelerated phenotypic evolution, unresolved by Clausen et al., that evidently reflect rapid \"budding off\" of morphologically distinct lineages in ecologically novel settings. In rDNA trees of Californian Holocarpha, lineages representing different cryptic biological species, documented by Clausen, appear to predate the origin of a morphologically and ecologically distinctive taxon (H. macradenia (DC.) Greene) that retains interfertility with relatives of ancestral phenotype; at fine-scale levels of divergence, a disconnect is evident between evolution of intrinsic, post-mating reproductive barriers and phenotypic evolution in Holocarpha. Clausen's evidence for strong intersterility barriers between the mostly annual, continental species of the “Madia” lineage contrasts with Gerald D. Carr and Donald W. Kyhos's subsequent finding of partial to full interfertility between the phenotypically disparate, insular species of the Hawaiian silversword alliance, a monophyletic group that descended from continental ancestors in the “Madia” lineage. Molecular phylogenetic data indicating major ecological changes associated with diversification, a brief timeframe for diversification, and a shift to woodiness in the ancestry of the silversword alliance uphold Carlquist's hypothesis of adaptive radiation of the group and help explain the lack of substantial, internal barriers to gene flow across lineages therein. Results of recent investigations have shown that highly dynamic evolutionary change in Madiinae, both in phenotypic characters and in modes and patterns of diversification, extends to even finer-scale evolutionary levels than indicated by Clausen et al.'s elegant studies. In general, current evidence on diversification in Madiinae appears to be consistent with Clausen et al.'s views concerning the importance of ecological factors in incipient evolutionary divergence. Phylogeny of Madiinae is no longer the intractable problem perceived by Clausen; relatively little is known about the biological basis for the extreme evolutionary propensities of tarweeds.

Jens C. Clausen, David D. Keck, and William M. Hiesey's biosystematic research on continental tarweeds (Madiinae; Compositae) provided diverse examples of evolutionary change for Clausen's synthesis, Stages in the Evolution of Plant Species. Subsequent anatomical work by Sherwin Carlquist demonstrated that the tarweed lineage also includes a spectacular example of adaptive radiation, the Hawaiian silversword alliance. Molecular phylogenetic data and evidence from genetic and hybridization studies have allowed additional perspectives on Clausen et al.'s and Carlquist's hypotheses of tarweed-silversword evolution. In Californian Layia, Clausen et al.'s evidence for gradual allopatric diversification for the n = 7 taxa accords with patterns of molecular divergence and decay of interfertility across lineages inferred from a rate-constant rDNA tree. In contrast, recent evidence on patterns and timing of diversification in an n = 8 Layia clade indicates multiple examples of accelerated phenotypic evolution, unresolved by Clausen et al., that evidently reflect rapid \"budding off\" of morphologically distinct lineages in ecologically novel settings. In rDNA trees of Californian Holocarpha, lineages representing different cryptic biological species, documented by Clausen, appear to predate the origin of a morphologically and ecologically distinctive taxon (H. macradenia (DC.) Greene) that retains interfertility with relatives of ancestral phenotype; at fine-scale levels of divergence, a disconnect is evident between evolution of intrinsic, post-mating reproductive barriers and phenotypic evolution in Holocarpha. Clausen's evidence for strong intersterility barriers between the mostly annual, continental species of the \"Madia\" lineage contrasts with Gerald D. Carr and Donald W. Kyhos's subsequent finding of partial to full interfertility between the phenotypically disparate, insular species of the Hawaiian silversword alliance, a monophyletic group that descended from continental ancestors in the \"Madia\" lineage. Molecular phylogenetic data indicating major ecological changes associated with diversification, a brief timeframe for diversification, and a shift to woodiness in the ancestry of the silversword alliance uphold Carlquist's hypothesis of adaptive radiation of the group and help explain the lack of substantial, internal barriers to gene flow across lineages therein. Results of recent investigations have shown that highly dynamic evolutionary change in Madiinae, both in phenotypic characters and in modes and patterns of diversification, extends to even finer-scale evolutionary levels than indicated by Clausen et al.'s elegant studies. In general, current evidence on diversification in Madiinae appears to be consistent with Clausen et al.'s views concerning the importance of ecological factors in incipient evolutionary divergence. Phylogeny of Madiinae is no longer the intractable problem perceived by Clausen; relatively little is known about the biological basis for the extreme evolutionary propensities of tarweeds.