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Hydrothermal ecosystems face threats from planned deep‐seabed mining activities, despite the fact that patterns of realized connectivity among vent‐associated populations and communities are still poorly understood. Since populations of vent endemic species depend on larval dispersal to maintain connectivity and resilience to habitat changes, effective conservation strategies for hydrothermal ecosystems should include assessments of metapopulation dynamics. In this study, we combined population genetic methods with biophysical models to assess strength and direction of gene flow within four species of the genus Alviniconcha (A. boucheti, A. kojimai, A. strummeri and A. hessleri) that are ecologically dominant taxa at Western Pacific hydrothermal vents. In contrast to predictions from dispersal models, among‐basin migration in A. boucheti occurred predominantly in an eastward direction, while populations within the North Fiji Basin were clearly structured despite the absence of oceanographic barriers. Dispersal models and genetic data were largely in agreement for the other Alviniconcha species, suggesting limited between‐basin migration for A. kojimai, lack of genetic structure in A. strummeri within the Lau Basin and restricted gene flow between northern and southern A. hessleri populations in the Mariana back‐arc as a result of oceanic current conditions. Our findings show that gene flow patterns in ecologically similar congeneric species can be remarkably different and surprisingly limited depending on environmental and evolutionary contexts. These results are relevant to regional conservation planning and to considerations of similar integrated analyses for any vent metapopulations under threat from seabed mining.

Marine spatial population dynamics are often addressed with a focus on larval dispersal, without taking into account movement behavior of individuals in later life stages. Processes occurring during demersal life stages may also drive spatial population dynamics if habitat quality is perceived differently by animals belonging to different life stages. In this study, we used a dual approach to understand how stage‐structured habitat use and dispersal ability of adults shape the population of a marine fish species. Our study area and focal species provided us with the unique opportunity to study a closed island population. A spatial simulation model was used to estimate dispersal distances along a coral reef that surrounds the island, while contributions of different nursery bays were determined based on otolith stable isotope signatures of adult reef fish. The model showed that adult dispersal away from reef areas near nursery bays is limited. The results further show that different bays contributed unequally to the adult population on the coral reef, with productivity of juveniles in bay nursery habitat determining the degree of mixing among local populations on the reef and with one highly productive area contributing most to the island's reef fish population. The contribution of the coral reef as a nursery habitat was minimal, even though it had a much larger surface area. These findings indicate that the geographic distribution of nursery areas and their productivity are important drivers for the spatial distribution patterns of adults on coral reefs. We suggest that limited dispersal of adults on reefs can lead to a source–sink structure in the adult stage, where reefs close to nurseries replenish more isolated reef areas. Understanding these spatial population dynamics of the demersal phase of marine animals is of major importance for the design and placement of marine reserves, as nursery areas contribute differently to maintain adult populations.

Genomic data are increasingly used in primatology to understand how landscape features, dispersal patterns, and historical processes shape population structure and conservation-relevant diversity. The gelada ( Theropithecus gelada ), an endemic primate of the Ethiopian highlands, is currently divided into three subspecies; yet little is known about the extent of genomic variation within these groups. This gap is most pronounced for the Central gelada ( T. gelada obscurus ), the most widespread subspecies, for which genomic data have until now been available from only three individuals from a single site. To broaden this representation, we generated whole-genome sequence data from ten Central gelada individuals sampled across four central Ethiopian sites and two Southern geladas ( T. gelada arsi ), doubling the number of available genomes for this recently Endangered subspecies. Combining these new data with previously published genomes, we assessed patterns of genomic diversity across the species and tested how major geophysical features of the Ethiopian highlands influence population connectivity. Models incorporating preferred altitudinal ranges for geladas provided a substantially better fit to observed genomic distances than models based only on straight-line geographic distance, indicating that elevational structure strongly constrains movement. Using this framework, we inferred the affinities of unsampled Northern populations, finding stronger support for an east-west than a north-south division between the Northern gelada ( T. gelada gelada ) and Central gelada. These results highlight the importance of highland topography in shaping gelada population structure and inform future research and conservation planning for Ethiopian primates.

MANY MARINE SPECIES have small, pelagic rarly life stages. For those species, knowledge of population connectivity requires understanding the origin and trajectories of dispersing eggs and larvae among subpopulations. Researchers have used various terms to describe the movement of eggs and larvae in the marine environment, including larval dispersal, dispersion, drift, export, retention, and larval transport. Though these terms are intuitive and relevant for understanding the spatial dynamics of populations, some may be nonoperational (i.e., not measurable), and the variety of descriptors and approaches used makes studies difficult to compare. Furthermore, the assumptions that underlie some of these concepts are rarely identified and tested. Here, we describe two phenomenologically relevant concepts, larval transport and larval dispersal. These concepts have corresponding operational definitions, are relevant to understanding population connectivity, and have a long history in the literature, although they are sometimes confused and used interchangeably. After defining and discussing larval transport and dispersal, we consider the relative importance of planktonic processes to the overall understanding and measurement of population connectivity. The ideas considered in this contribution are applicable to most benthic and pelagic species that undergo transformations among life stages. In this review, however, we focus on coastal and nearshore benthic invertebrates and fishes.

1. Defaunation of large-bodied frugivores could be causing severe losses of crucial ecosystem functions such as seed dispersal. The immediate ecological consequences may include alteration or even collapse of seed-mediated gene flow affecting plant population connectivity, with impacts on the regional scale distribution of genetic variation. Yet, these far-reaching consequences of defaunation remain understudied. 2. Here, we tested whether human-induced defaunation of the Canarian frugivorous lizards (Gallotia, Lacertidae) altered within-island population connectivity and the amount and large-scale distribution of genetic variation of Neochamaele pulverulenta (Rutaceae), which relies exclusively on these lizards for seed dispersal. Our study system defines a lizard downsizing gradient with three contrasted ecological scenarios (islands) with relatively optimal (Gran Canaria; large-sized lizards), suboptimal (Tenerife; medium) and collapsed seed dispersal processes (La Gomera; small). We extensively sampled individual plant genotypes from 80 populations spanning the full geographical range of the plant to examine their genetic diversity, population-genetic network topologies, and the patterns of isolation both by distance (IBD) and resistance (IBR) across these three ecological scenarios. 3. Plant genetic diversity appeared unaffected by defaunation-mediated downsizing of frugivorous lizards. However, we found a reduced overall plant population connectivity together with an increased isolation by distance within the most defaunated islands (La Gomera and, to a lesser extent, Tenerife) when compared with the scenario preserving the functionality of lizard-mediated seed dispersal (Gran Canaria). The results, with a significant effect of lizard downsizing, were robust when controlling for biotic/abiotic differences among the three islands by means of isolation by resistance models (IBR). 4. Synthesis. Our results provide valuable insights into the far-reaching consequences of the deterioration of mutualisms on plant population dynamics over very large spatial scales. Conservation of large-bodied frugivores is, thus, essential because their irreplaceable mutualistic dispersal services maintain an extensive movement of seeds across the landscape, crucial for maintaining the genetic cohesiveness of metapopulations and the adaptive potential of plant species across their entire geographical range.

THERE IS GROWING consensus that life within the world's ocean is under considerable and incereasing stress from human activities (Hutchings, 2000; Jackson et al, 2001). This unprecedented strain on both the structture and founction of marine ecosystems has led to calls for new management approaches to counter anthropogenic impacts in the coastal ocean (Botsford et al., 1997; Browman and Sterigiou, 2004: Pikitech et al., 2004) Spatial management including Marine Protected Areas (MPAs), has been touted as a method for both conserving biodiversity and managing fisheries (Agardy, 1997). Countinuing debates on the efficacy of MPAs have identified the need for models that capture the spital dynamics of marine population, especially with respect to level disersal (Willis et al., 2003; Sale et al., 2005)... Theortical studies suggest that population connectivity plays a fundamental role in local and metapopulation dynamics, community dynamics and structure, genetic diversity, and the resiliency of populations to human exploitation (Hastings and Harrison, 1994; Botsford et al., 2001). Modeling efforts have been hindered, however, by the paucity of empirical estimates of, and knowledge of the processes controlling, population connectivity in ocean ecosystems. While progress has been made with older life stages, the larval-dispersal component of connectivity remains unresolved for most marine populations. This lack of knowledge represents a fundamental obstacle to obtaining a comprehensive understanding of the population dynamics of marine organisms. Furthermore, a lack of spatial context that such information would provide has limited the ability of ecologists to evaluate the design and potential benefits of novel conservation and resource-management strategies.

The persistence of most coastal marine species depends on larvae finding suitable adult habitat at the end of an offshore dispersive stage that can last weeks or months. We tested the effects that ocean acidification from elevated levels of atmospheric carbon dioxide (CO₂) could have on the ability of larvae to detect olfactory cues from adult habitats. Larval clownfish reared in control seawater (pH 8.15) discriminated between a range of cues that could help them locate reef habitat and suitable settlement sites. This discriminatory ability was disrupted when larvae were reared in conditions simulating CO₂-induced ocean acidification. Larvae became strongly attracted to olfactory stimuli they normally avoided when reared at levels of ocean pH that could occur ca. 2100 (pH 7.8) and they no longer responded to any olfactory cues when reared at pH levels (pH 7.6) that might be attained later next century on a business-as-usual carbon-dioxide emissions trajectory. If acidification continues unabated, the impairment of sensory ability will reduce population sustainability of many marine species, with potentially profound consequences for marine diversity.

Unravelling the history of range shifts is key for understanding past, current and future species distributions. Anthropogenic transport of species alters natural dispersal patterns and directly affects population connectivity. Studies have suggested that high levels of anthropogenic transport homogenize patterns of genetic differentiation and blur colonization pathways. However, empirical evidence of these effects remains elusive. We compared two range-shifting species (Microcosmus squamiger and Ciona robusta) to examine howanthropogenic transport affects our ability to reconstruct colonization pathways using genomic data. We first investigated shipping networks from the 18th century onwards, cross-referencing these with regions where the species have records to infer how each species has potentially been affected by different levels of anthropogenic transport. We then genotyped thousands of single-nucleotide polymorphisms from 280 M. squamiger and 190 C. robusta individuals collected across their extensive species' ranges and reconstructed colonization pathways. Differing levels of anthropogenic transport did not preclude the elucidation of population structure, though specific inferences of colonization pathways were difficult to discern in some of the considered scenario sets. We conclude that genomic data in combination with information of underlying introduction drivers provide key insights into the historic spread of range-shifting species. This article is part of the theme issue 'Species' ranges in the face of changing environments (part I)'.

Population dynamics of marine species that are sessile as adults are driven by oceanographic dispersal of larvae from spawning to nursery grounds. This is mediated by life‐history traits such as the timing and frequency of spawning, larval behaviour and duration, and settlement success. Here, we use 1725 single nucleotide polymorphisms (SNPs) to study the fine‐scale spatial genetic structure in the commercially important cockle species Cerastoderma edule and compare it to environmental variables and current‐mediated larval dispersal within a modelling framework. Hydrodynamic modelling employing the NEMO Atlantic Margin Model (AMM15) was used to simulate larval transport and estimate connectivity between populations during spawning months (April–September), factoring in larval duration and interannual variability of ocean currents. Results at neutral loci reveal the existence of three separate genetic clusters (mean FST = 0.021) within a relatively fine spatial scale in the north‐west Atlantic. Environmental association analysis indicates that oceanographic currents and geographic proximity explain over 20% of the variance observed at neutral loci, while genetic variance (71%) at outlier loci was explained by sea surface temperature extremes. These results fill an important knowledge gap in the management of a commercially important and overexploited species, bringing us closer to understanding the role of larval dispersal in connecting populations at a fine geographic scale.