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Heat shock protein 90 (Hsp90) molecular chaperones play important roles in plant growth and responses to environmental stimuli. However, little is known about the genes encoding Hsp90s in common wheat. Here, we report genetic and functional analysis of the genes specifying cytosolic Hsp90s in this species. Three groups of homoeologous genes (TaHsp90.1, TaHsp90.2 and TaHsp90.3), encoding three types of cytosolic Hsp90, were isolated. The loci containing TaHsp90.1, TaHsp90.2 and TaHsp90.3 genes were assigned to groups 2, 7 and 5 chromosomes, respectively. TaHsp90.1 genes exhibited higher transcript levels in the stamen than in the leaf, root and culm. TaHsp90.2 and TaHsp90.3 genes were more ubiquitously transcribed in the vegetative and reproductive organs examined. Decreasing the expression of TaHsp90.1 genes through virus-induced gene silencing (VIGS) caused pronounced inhibition of wheat seedling growth, whereas the suppression of TaHsp90.2 or TaHsp90.3 genes via VIGS compromised the hyper-sensitive resistance response of the wheat variety Suwon 11 to stripe rust fungus. Our work represents the first systematic determination of wheat genes encoding cytosolic Hsp90s, and provides useful evidence for the functional involvement of cytosolic Hsp90s in the control of seedling growth and disease resistance in common wheat.

Objective The fungus Rhizoctonia solani is an important seedling pathogen to many plant hosts including cotton ( Gossypium ). For multiple annual crops there have been relatively few screenings of germplasm conducted to identify potential sources of resistance to R. solani , and for cotton we have not been able to identify any recent germplasm screenings for resistance to this seedling pathogen. Therefore, the objective of this study was to screen historical as well as more recently developed Upland ( Gossypium hirsutum L.) and Pima ( Gossypium barbadense L.) cotton germplasm for resistance/susceptibility to R. solani. Results The results of the R. solani screening found no significant differences among 85 Upland and 10 Pima cotton genotypes, which were all similarly susceptible to R. solani based on data for root rot and fresh root weight. While Upland and Pima cotton make up the majority of cotton grown worldwide, the lack of resistance identified in both historical and newer Upland and Pima germplasm suggests a pressing need for further exploration and selection of novel sources of resistance within the vast genetic diversity of different domesticated and wild cotton species.

Fusarium verticillioides infects maize, causing ear rot, yield loss and contamination by fumonisin mycotoxins. The fungus can be transmitted via kernels and cause systemic infection in maize. Maize resistance to the fungus may occur at different developmental stages, from seedling to maturity. Resistance during kernel germination is part of the plant-pathogen interaction and so far this aspect has not been investigated. In the present study, a genome wide association study (GWAS) of resistance to Fusarium during the seedling developmental stage was conducted in a maize diversity panel using 226,446 SNP markers. Seedling germination and disease phenotypes were scored on artificially inoculated kernels using the rolled towel assay. GWAS identified 164 SNPs significantly associated with the traits examined. Four SNPs were associated with disease severity score after inoculation, 153 were associated with severity in asymptomatic kernels and 7 with the difference between the severity ratings in inoculated and non-inoculated seeds. A set of genes containing or physically near the significant SNPs were identified as candidates for Fusarium resistance at the seedling stage. Functional analysis revealed that many of these genes are directly involved in plant defense against pathogens and stress responses, including transcription factors, chitinase, cytochrome P450, and ubiquitination proteins. In addition, 25 genes were found in high linkage disequilibrium with the associated SNPs identified by GWAS and four of them directly involved in disease resistance. These findings contribute to understanding the complex system of maize-F. verticillioides and may improve genomic selection for Fusarium resistance at the seedling stage.

The giant farming industry of the kelp Saccharina japonica in China relies on supply of seedlings. In the seedling hatchery, green rotten disease is one of the dreadful diseases which may lead to a complete failure of hatchery operation when it breaks out. The changes of the bacterial community associated with seedlings at early stage of green rotten disease are largely unknown. To address this question, we have analyzed the structures of bacterial community using 16S rRNA gene sequencing and made comparisons of the structure in the healthy tissues with that of diseased ones. The data showed that microbial diversity increased and the bacterial community composition changed at early stage of green rotten disease. The genera of Granulosicoccus, Litorimonas, Tenacibaculum, and Blastopirellula were dominance on the diseased tissues and increased dramatically compared with the healthy ones. This indicated that these four genera were probably associated with green rotten disease of seedlings in S. japonica. This detailed comparison of bacterial communities between healthy and diseased tissues on juvenile kelp extends current knowledge on microbial community assembly on diseased seedlings of kelp.

Pythium isolates from diseased and dead bait plants of maize and cress grown in compost or various soils (maize fields, parkland under deciduous trees, grassland) were characterised and tested for pathogenicity to maize (Zea mays L.). In pot tests performed under controlled conditions, pathogenicity of the isolates to maize was apparent by reduction of root and shoot growth, whereas damping-off of maize seedlings was less frequent. Contrarily, pea seedlings were killed by pathogenic Pythium isolates. Pythium isolates from diseased maize seedlings and pathogenic strains from other gramineous plants (P. phragmitis, P. aff.phragmitis, P. catenulatum) were not necessarily more virulent to maize compared to isolates originating from dicotyledonous plants (cress). The most virulent isolates originated from compost and caused a reduction of maize shoot growth of up to 60%. Phylogenetic analysis revealed that they were very closely related to P. ultimum var. ultimum and P. arrhenomanes, respectively. Isolates originating from maize fields, grassland and parkland under deciduous trees, a reference culture of P. arrhenomanes and strains of P. phragmitis, P. aff. phragmitis and P. catenulatum with known pathogenicity on reed were non-pathogenic on maize. Isolates from compost, and from maize fields generally had a higher temperature optimum for mycelial growth (30 °C) and a faster growth rate (1.5–2.0 mm h−1) compared to the isolates from parkland under deciduous trees and grassland soil (20–25 °C, ~1.0 mm h−1), respectively. This study indicates a potential impact of pathogenic Pythium on maize plants even in the absence of visible symptoms.

Ramularia collo-cygni is an ascomycete fungus that colonizes barley primarily as a benign endophyte, although this interaction can become pathogenic, causing the disease Ramularia leaf spot (RLS). Factors, particularly reactive oxygen species, that resulted in the transition of the fungus from endophyte to necrotrophic parasite and the development of disease symptoms were investigated. Disease development in artificially inoculated seedlings of barley varieties varying in partial resistance to RLS was related to exposure to abiotic stress prior to inoculation. Histochemical and molecular analysis determined the effect of R. collo-cygni colonization on accumulation of reactive oxygen species and antioxidant gene expression. Development of RLS on barley lines defective in antioxidant enzymes and with altered redox status or non-functional chloroplasts was compared with the accumulation of fungal biomass to determine how these factors affect disease symptom expression. Exposure to abiotic stress increased symptom development in all susceptible and most partially resistant barley varieties, in association with greater hydrogen peroxide (H2O2) levels in leaves. Decreased activity of the antioxidant enzymes superoxide dismutase and catalase in transgenic and mutant plants had no effect on the disease transition, whereas manipulation of H2O2 levels during asymptomatic growth of the fungus increased disease symptoms in most susceptible varieties but not in partially resistant plants. Barley mutants that undergo rapid loss of green leaf area when infected by R. collo-cygni or albino mutants with non-functional chloroplasts showed reduced development of RLS symptoms. These results imply that in seedlings the pathogenic transition of the normally endophytic fungus R. collo-cygni does not result from senescence as such, but rather is promoted by factors that result in changes to host reactive oxygen species. Barley varieties vary in the extent to which these factors promote RLS disease.

Cover crops can offer erosion protection as well as soil and environmental quality benefits. Cereal rye (Secale cereale L.) is the most commonly used winter cover crop in corn–soybean rotations in the upper Midwest of the USA because of its superior winter hardiness and growth at cool temperatures. Cereal rye cover crops, however, can occasionally have negative impacts on the yield of a following corn crop, which discourages broader adoption and introduces substantial risk for corn farmers employing cover crops. We hypothesized that because cereal rye shares some pathogens with corn, it may be causing increased disease in corn seedlings planted soon after cereal rye termination. To test this, we performed a series of experiments in a controlled environment chamber to assess the response of corn seedlings with and without a commercial fungicide seed treatment to the presence of cereal rye or other species of cover crops that were terminated with herbicide prior to corn planting. Our results indicate that under cool and wet conditions, cereal rye reduces corn seedling growth performance and increases incidence of corn seedling root disease. Fungicide seed treatment had limited efficacy in preventing these effects, perhaps because environmental conditions were set to be very conducive for disease development. However, hairy vetch (Vicia villosa Roth) and winter canola (Brassica napus L.) cover crops had fewer negative impacts on corn seedlings compared with cereal rye. Thus, to expand the practice of cover cropping before corn, it should become a research priority to develop alternative management practices to reduce the risk of corn seedling root infection following cereal rye cover crops. Over the longer term, testing, selection and breeding efforts should identify potential cover crop species or genotypes that are able to match the winter hardiness, growth at cool temperatures and the conservation and environmental quality benefits of cereal rye, while avoiding the potential for negative impacts on corn seedlings when environmental conditions are suitable for disease development.

Maize is a socially and economically important crop in Africa (and worldwide) that is severely affected by many fungal pathogens. The pathogen Fusarium verticillioides can infect all maize tissue and causes Fusarium ear rot (FER), a disease that greatly reduces quantity and quality of annual maize yields. In response to fungal infection, maize produces kauralexins and zealexins, which are antimicrobial terpenoid phytoalexins that directly reduce the growth of many fungal pathogens including F. verticillioides. This research evaluates the induction of kauralexins and zealexins in F. verticillioides-inoculated sub-tropical maize lines. CML444 (moderately-resistant to FER) and CML144 (susceptible to FER) accumulated both phytoalexin types in seedling roots in response to seed inoculation with F. verticillioides. CML444 control roots also had higher kauralexin levels in comparison to CML144, suggesting that kauralexin accumulation may be primed for rapid up-regulation in CML444 following fungal infection. The an2 maize mutant, which displays reduced expression of the key kauralexin biosynthetic gene ZmAn2, accumulated decreased root levels of kauralexins and zealexins following F. verticillioides inoculation in comparison to wildtype line W22, confirming that both kauralexins and zealexins play a role in the resistance response to seedling disease caused by F. verticillioides.

Pyramiding of genes that confer partial resistance is a method for developing wheat (Triticum aestivum L.) cultivars with durable resistance to leaf rust caused by Puccinia triticina. In this research, a doubled haploid population derived from the cross between the synthetic hexaploid wheat (SHW) (xAegilotriticum spp.) line TA4152-60 and the North Dakota breeding line ND495 was used for identifying genes conferring partial resistance to leaf rust in both the adult plant and seedling stages. Five QTLs located on chromosome arms 3AL, 3BL, 4DL, 5BL and 6BL were associated with adult plant resistance with the latter four representing novel leaf rust resistance QTLs. Resistance effects of the 4DL QTL were contributed by ND495 and the effects of the other QTLs were contributed by the SHW line. The QTL on chromosome arm 3AL had large effects and also conferred seedling resistance to leaf rust races MJBJ, TDBG and MFPS. The other major QTL, which was on chromosome arm 3BL, conferred seedling resistance to race MFPS and was involved in a significant interaction with a locus on chromosome arm 5DS. The QTLs and the associated molecular markers identified in this research can be used to develop wheat cultivars with potentially durable leaf rust resistance.

Seedlings of the ecologically important, critically endangered tree Ocotea monteverdensisis experience high mortality in the Monteverde, Costa Rica, cloud forests at the onset of the wet season, yet there are no studies suggesting the disease etiology. Here, healthy and diseased plant root and bulk soils were analyzed for various carbon and nitrogen (N) metrics and respiration levels, and DNA sequence-based bacterial and fungal community compositions. All nitrogen metric levels were greater in diseased vs. healthy plant root soils, which could enhance pathogen growth and pathogenic mechanisms. Greater DNA percentages from several potential pathogens were found in diseased vs. healthy plant root soils, suggesting this disease may be associated with a root pathogen. The DNA of the fungus Mycosphaerella was at greater levels in diseased vs. healthy plant root soils than other potential pathogens. Mycosphaerella causes similar diseases in other plants, including coffee, after onset of the wet season. The O. monteverdensis disease also occurs in seedlings planted within or near former coffee plantations at wet season onset. Distance-based linear model analyses indicated that NO3− levels best predicted the pattern of fungal pathogens in the soils, and Mycosphaerella and Tremella best predicted the patterns of the different N metrics in the soils, supporting their possible roles in this disease.