Explore the vast range of titles available.

Site-specific high throughput monitoring of airborne ascospores of Venturia inaequalis, the causal agent of apple scab, can improve existing warning systems. A new qPCR assay was developed to quantify ascospores collected by a simple rotating-arm spore sampler. The qPCR assay was highly specific and sensitive, with a limit of quantification of 20 ascospores per sample. The new detection system was compared to sampling with a traditional Burkard volumetric spore trap and to microscopic quantification. During controlled ascospore release experiments in a closed environment, strong correlations (ρ: 0.96 to 0.99) were observed between the two types of samplers and the two methods of quantification but significantly larger numbers of spores (log difference: 0.43 to 0.69) were obtained when using the rotating-arm sampler and when using molecular quantification. During comparisons under outdoor conditions over a three-year period, reasonable correlations between the techniques (average ρ = 0.61) were observed. When rotating-arm samplers operate continuously they can get saturated but their counts still correlated better with those from the Burkard sampler than when they only operate during rain and until two hours after. This suggests that ascospores were also captured outside of rain events. Based on these comparisons, molecular quantification of spores captured with the rotating-arm sampler appears to be a sensitive and reliable method to determine airborne ascospores of V. inaequalis and holds promise as a tool to guide targeted fungicide applications in commercial orchards as well as to increase our knowledge of the aerobiology of this pathogen.

Wheat is one of the main staple food crops, and 775 million tonnes of wheat were produced worldwide in 2022. Fungal diseases such as Fusarium head blight, Septoria tritici blotch, spot blotch, tan spot, stripe rust, leaf rust, and powdery mildew cause serious yield losses in wheat and can impact quality. We aimed to investigate the incidence of spores from major fungal pathogens of cereals in the field by comparing microscopic and metagenomic based approaches for spore identification. Spore traps were set up in four geographically distinct UK wheat fields (Carnoustie, Angus; Bishop Burton, Yorkshire; Swindon, Wiltshire; and Lenham, Kent). Six major cereal fungal pathogen genera ( Alternaria spp. , Blumeria graminis, Cladosporium spp., Fusarium spp., Puccinia spp., and Zymoseptoria spp.) were found using these techniques at all sites. Using metagenomic and BLAST analysis, 150 cereal pathogen species (33 different genera) were recorded on the spore trap tapes. The metagenomic BLAST analysis showed a higher accuracy in terms of species-specific identification than the taxonomic tool software Kraken2 or microscopic analysis. Microscopic data from the spore traps was subsequently correlated with weather data to examine the conditions which promote ascospore release of Fusarium spp. and Zymoseptoria spp. This revealed that Zymoseptoria spp. and Fusarium spp. ascospore release show a positive correlation with relative humidity (%RH). Whereas air temperature (°C) negatively affects Zymoseptoria spp. ascospore release.

Peanut smut ( Thecaphora frezzii) is one of the most important peanut diseases in Argentinian peanut production. This monocyclic soil-borne pathogen transforms kernels into spore masses. Spore liberation from broken infected pods during the harvest process is supposed to be the main mechanism of inoculum spread, with the subsequent spread among fields increasing the soil inoculum for future peanut cropping seasons. However, we are unaware of any published study on the role of wind (in terms of speed and direction) in how far smut spores spread. Therefore, we conducted an observational study where passive spore traps were distributed at harvest around six fields placed at 100, 200, 300, and 400 m away from each field’s centroid in four cardinal directions. Three time slices were sampled: from the beginning of harvest to 90-, 180-, and 270-minutes continuously during harvest. Wind speed and direction were recorded at each trap. A generalized additive model was fitted to describe the spore spread. Modeling the dispersal shows that the spread is influenced by wind speed and the smut severely damaged pods incidence present at the harvested field. Additionally, spore size and proportion of different smut spore types were assessed (from a single unit spore to a 5-multinuclear propagule). No statistical differences were observed in the proportion of the spore types trapped. However, fewer spores were trapped at distances farther from the harvested area. This work led us to understand a fundamental component of the peanut smut cycle and epidemiology, which is to design management strategies. For example, avoiding harvest on windy days (typically >10 km h -1 ) to prevent the distant spread of inoculum for subsequent seasons or predicting the risk surrounding an infected field.

Fungal pathogens that benefit from climate change have become more prevalent as a consequence of extended drought periods and higher temperatures. Since the dry and hot years of 2018/2019, the causative agent of sooty bark disease Cryptostroma corticale led to an increasing die back in sycamore forest stands in Germany. Thus, in 2019, spore traps were set up in one forest stand to investigate the dispersal of the pathogen under temporal and spatial aspects. The mortality rate in the study site due to sooty bark disease was quite high: 31% in spring, increasing to 49% in autumn 2019. Quantifying the airborne spores of C. corticale in consecutive periods of the year, a correlation with seasonal aspects was detected. In winter and spring, spore release was relatively low compared with summer months. In summer, high abundances of conidia of C. corticale were released. In July, 399 spores were detected per cm2 per day. From June to August, spore release was 12.6 times higher than in springtime. In autumn 2019, a decrease was visible, although the number of conidia was still higher than in spring. The vertical gradient of spore abundances changed over time: the lowest spore release was found along a gradient at 14 m of height in spring, which shifted down to 2 m in autumn. According to our results of spore release, sooty bark disease is strongly driven by the impact of seasonal factors.

The seasonal abundance of Diatrypaceae spores was studied in southern California's desert table grape-growing region of Coachella Valley. Glass microscope slides covered with petroleum jelly were placed in a mature cv. Mid-Night Beauty[R] vineyard, and collected weekly from September 2006 to May 2009 (1400 samples for 140 consecutive weeks). Overall, Diatrypaceae-like colonies were recorded from Petri plates after processing spore traps in 93 (66%) of 140 weeks. Phylogenetic analyses showed Eutypella citricola and Eutypella microtheca to be the Diatrypaceae spp. captured from the spore traps. Though spores were captured throughout each year, their incidence varied among the different seasons. The greatest number of Eutypella spores were captured in autumn (38.7% of the total) followed by winter (30.6%), summer (19.7%), and spring (11%). The greatest numbers of spores were captured in October each year (15.7%) and least in June (1%). Eutypella spore release was correlated with rainfall only in 26 (28%) of the 93 weeks that spores were captured during the study. Analysis of diseased samples collected from the cv. Mid-Night Beauty[R] vineyard showed that E. citricola, E. microtheca and E. scoparia were the most prevalent fungi isolated from cankers. A pathogenicity study showed that E. citricola and E. microtheca isolates collected from spore traps caused larger vascular necrosis than the non-inoculated controls, indicating their role as pathogens on grapevines. This study has demonstrated Eutypella spp. to play an important role in grapevine health under desert growing conditions of southern California. In addition, and contrary to what it is largely accepted, results from this research suggest that Diatrypaceae spore release can occur in the absence of precipitation. This study expands current knowledge on epidemiology of Diatrypaceae spp. other than Eutypa lata, and provides important information for enhancing control strategies against grapevine trunk diseases under desert growing conditions. Keywords. Canker, Diatrypaceae, epidemiology, Eutypa, Eutypella, grapevine trunk diseases, spore trap, Vitis vinifera.

The brown rot of apple and stone fruits caused by Monilinia fructigenais a widespread disease causing serious losses in fruit production. The most common way the pathogen spreads is via airborne conidia. Therefore, air samplers can effectively monitor its occurrence. In this study, we have conducted a comparative sampling of two cheap air samplers – rotorod spore traps called ROTTRAP 52 and AMETRAP. An optimised quantitative real-time PCR assay with a hydrolysis probe evaluated samples. 14 concurrent samplings were positive in all cases, showing higher spore counts in almost all AMETRAP samples obtained under various weather conditions. The daily maximum air temperature was the only significant meteorological variable positively affecting the recorded spore counts. Both rotorod samplers are an efficient and economic option for horticulturists and researchers for M. fructigenaair inoculum monitoring.

Fusarium spp. and Alternaria spp., two genera of filamentous fungi, are common colonizers of the wheat phyllosphere. Both can be pathogenic and produce mycotoxins that are harmful to consumers. Their in-field infection dynamics have been a focus for the development of new control strategies. We analysed the abundance on plant ears and spore deposition patterns of Fusarium spp. and Alternaria spp. in a topographically heterogeneous field. Abundances were assessed genetically, using qPCR-based techniques, and passive spore traps were installed for quantifying the spore deposition at different plant heights. Data loggers were placed to measure the differences in microclimate across the field. Results indicate different distribution and spore deposition patterns for the two fungi. Fusarium spp. spore and genetic abundances were higher in spots with a more humid and colder under-canopy microclimate. Alternaria spp. showed the opposite trend for genetic abundance, while its spore deposition was not correlated to any of the microclimatic conditions and was more uniform across the field. Our study extends the knowledge on the dispersal and in-field infection dynamics of Fusarium spp. and Alternaria spp., important for a better understanding of the epidemiology of these wheat pathogens. It also illustrates that topographically heterogeneous fields are a suitable environment for studying the ecology of phyllosphere-colonizing fungi.

The airborne inoculum of Fusarium circinatum Nirenberg & O’Donnell, the fungal pathogen causing Pine Pitch Canker (PPC), is one of the main means of spread of the disease in forest stands and forest nurseries. Since this world-wide known pathogen was introduced in Europe, its biology in this newly infested area still remains scarcely known. To shed more light on this topic, we set up an experiment on a naturally PPC infested forest of Monterey pine in Galicia (NW Spain) with the following two goals: (i) to describe the seasonal spore dispersal pattern during one year of regular sampling and (ii) to assess the spatial spore dispersal pattern around the infested plot. Portable rotating arm spore traps were used and complemented with meteorological measurements. The abundance of F. circinatum spores in the samples was assessed by quantitative PCR (qPCR) with a hydrolysis probe. The results showed almost permanent occurrence of the air inoculum throughout the whole year, being detected in 27 of the 30 samplings. No clear temporal trends were observed, but a higher air inoculum was favoured by previous lower air temperatures and lower leaf wetness. Conversely, neither rainfall nor air humidity seemed to have any significant importance. The spatial spread of the inoculum was noted to be successful up to a distance of 1000 m in the wind direction, even with winds of just 5 m·s−1. Our study shows that rotating arm spore traps combined with qPCR may be an efficient tool for F. circinatum detection.

Prophylactic stump treatments against the conifer root rot fungus Heterobasidion annosum s.l. should take into account the airborne inoculum density of the pathogen, in order to be economically feasible. Our objective was to test if an automatic volumetric spore trap (AVST) could be used as a sensitive alternative of passive traps for quantifying Heterobasidion airspora in forest stands. The routinely used wood disc exposure method (WDE) was implemented simultaneously with AVST in five coniferous monocultures and three near-natural stands without silvicultural management in Czechia. Air sampling took place for 24-h intervals in five months of the main sporulation period. The atmospheric concentration of H. annosum s.l. spores (cHa) was determined by qPCR with generic and species-specific primers. AVST detected more target species than WDE on 77% of sampling occasions. When comparing the relative abundance of the three European H. annosum s.l. species detected by AVST and WDE, H. parviporum and H. abietinum were found to be overrepresented on wood discs. cHa in November was significantly higher than in May and June, confirming the seasonal pattern typical for temperate Europe. For an accurate and rapid estimation of Heterobasidion primary infection risk, the usage of AVST is highly recommended.

Hymenoscyphus fraxineus is an invasive fungal species causing the most serious disease of ashes (Fraxinus spp.) in Europe—ash dieback. The biology of this fungus is not totally elucidated, neither its relation to the saprophytic species Hymenoscyphus albidus, native in Europe. Our study is focused on the description of seasonal spore dispersal of both fungi and its relation to meteorological conditions, which is needed for more precise and effective control of the disease. For this experiment one long time infected mixed forest in the SE Czech Republic was chosen. A seven-day automatic volumetric spore trap and a weather station were installed to continuously sample the aerospora from April to October 2014. In seven periods a rotating arm spore trap was also used to obtain 48-h air samples to compare the efficiency of these two types of air samplers. Air samples were evaluated solely by qPCR with a very low detection limit. Results show co-occurrence of inoculum of both fungi throughout the entire sampling period with peak levels in August. The origin of the inoculum sampled in the periods without apothecia is discussed. Air-inoculum occurrence of both fungi is significantly correlated with each other, suggesting their coexistence in this forest.