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14,243
result(s) for
"tracking data"
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Correcting for missing and irregular data in home-range estimation
by
Sheldon, D.
,
Setyawan, E.
,
Mueller, T.
in
Algorithms
,
Animal Distribution
,
animal tracking data
2018
Home-range estimation is an important application of animal tracking data that is frequently complicated by autocorrelation, sampling irregularity, and small effective sample sizes. We introduce a novel, optimal weighting method that accounts for temporal sampling bias in autocorrelated tracking data. This method corrects for irregular and missing data, such that oversampled times are downweighted and undersampled times are upweighted to minimize error in the home-range estimate. We also introduce computationally efficient algorithms that make this method feasible with large data sets. Generally speaking, there are three situations where weight optimization improves the accuracy of home-range estimates: with marine data, where the sampling schedule is highly irregular, with duty cycled data, where the sampling schedule changes during the observation period, and when a small number of home-range crossings are observed, making the beginning and end times more independent and informative than the intermediate times. Using both simulated data and empirical examples including reef manta ray, Mongolian gazelle, and African buffalo, optimal weighting is shown to reduce the error and increase the spatial resolution of home-range estimates. With a conveniently packaged and computationally efficient software implementation, this method broadens the array of data sets with which accurate space-use assessments can be made.
Journal Article
The energy landscape predicts flight height and wind turbine collision hazard in three species of large soaring raptor
by
Itty, Christian
,
Shepard, Emily L. C.
,
Calabrese, Justin M.
in
Aerodynamics
,
Aquila chrysaetos
,
Aspect ratio
2017
1. Collisions of large soaring raptors with wind turbines and other infrastructures represent a growing conservation concern. We describe a way to leverage knowledge about raptor soaring behaviour to forecast the probability that raptors fly in the rotor-swept zone. Soaring raptors are theoretically expected to select energy sources (uplift) optimally, making their flight height dependent on uplift conditions. This approach can be used to forecast collision hazard when planning or operating wind farms. Empirical investigations of the factors influencing flight height have, however, so far been hindered by observation error. 2. We propose a two-pronged approach. First, we fitted state-space models to z-axis GPS tracking data to filter heavy-tailed observation error and estimate the relationship between vertical movement parameters and weather variables describing the energy landscape (thermal and orographic uplift potential). Second, we fitted a mechanistic model of flight height above ground based on aerodynamics and resource selection theories. The approach was replicated for five GPS-tracked Andean condors Vultur gryphus, eight griffon vultures Gyps fulvus, and six golden eagles Aquila chrysaetos. 3. In all individuals, movement parameters correlated with thermal uplift potential in the expected direction. In all species, collision hazard was lowest for high thermal uplift potential values. Species specificities in the presence of a peak in collision hazard for medium values of thermal uplift potential could be explained by differences in wing loading and aspect ratio. 4. Synthesis and applications. Our fitted models convert weather data (thermal uplift potential) into a prediction of collision hazard (probability to fly in the rotor-swept zone), making it possible to prioritize different wind development projects with respect to the relative hazard they would pose to raptors. However, our model should be combined with post-construction monitoring to document, and eventually account for turbine avoidance behaviours in collision rate predictions.
Journal Article
Estimating where and how animals travel: An optimal framework for path reconstruction from autocorrelated tracking data
by
Leimgruber, P.
,
Olson, K. A.
,
Fleming, C. H.
in
Animals
,
Antelopes - physiology
,
autocorrelation
2016
An animal's trajectory is a fundamental object of interest in movement ecology, as it directly informs a range of topics from resource selection to energy expenditure and behavioral states. Optimally inferring the mostly unobserved movement path and its dynamics from a limited sample of telemetry observations is a key unsolved problem, however. The field of geostatistics has focused significant attention on a mathematically analogous problem that has a statistically optimal solution coined after its inventor, Krige. Kriging revolutionized geostatistics and is now the gold standard for interpolating between a limited number of autocorrelated spatial point observations. Here we translate Kriging for use with animal movement data. Our Kriging formalism encompasses previous methods to estimate animal's trajectories—the Brownian bridge and continuous‐time correlated random walk library—as special cases, informs users as to when these previous methods are appropriate, and provides a more general method when they are not. We demonstrate the capabilities of Kriging on a case study with Mongolian gazelles where, compared to the Brownian bridge, Kriging with a more optimal model was 10% more precise in interpolating locations and 500% more precise in estimating occurrence areas.
Journal Article
The retrospective analysis of Antarctic tracking data project
by
Department of Environmental Affairs [South Africa] (Oceans and Coasts) ; Oceans & Coasts Branch
,
Mammal Research Institute ; Department of Zoology and Entomology [Pretoria] ; University of Pretoria [South Africa]-University of Pretoria [South Africa]
,
University of Sydney Institute of Marine Science (USIMS) ; The University of Sydney
in
631/158/672
,
704/158/2445
,
Biodiversity
2020
The Retrospective Analysis of Antarctic Tracking Data (RAATD) is a Scientific Committee for Antarctic Research project led jointly by the Expert Groups on Birds and Marine Mammals and Antarctic Biodiversity Informatics, and endorsed by the Commission for the Conservation of Antarctic Marine Living Resources. RAATD consolidated tracking data for multiple species of Antarctic meso- and top-predators to identify Areas of Ecological Significance. These datasets and accompanying syntheses provide a greater understanding of fundamental ecosystem processes in the Southern Ocean, support modelling of predator distributions under future climate scenarios and create inputs that can be incorporated into decision making processes by management authorities. In this data paper, we present the compiled tracking data from research groups that have worked in the Antarctic since the 1990s. The data are publicly available through biodiversity.aq and the Ocean Biogeographic Information System. The archive includes tracking data from over 70 contributors across 12 national Antarctic programs, and includes data from 17 predator species, 4060 individual animals, and over 2.9 million observed locations.
Journal Article
Navigating through the r packages for movement
2020
The advent of miniaturized biologging devices has provided ecologists with unprecedented opportunities to record animal movement across scales, and led to the collection of ever‐increasing quantities of tracking data. In parallel, sophisticated tools have been developed to process, visualize and analyse tracking data; however, many of these tools have proliferated in isolation, making it challenging for users to select the most appropriate method for the question in hand. Indeed, within the r software alone, we listed 58 packages created to deal with tracking data or ‘tracking packages’. Here, we reviewed and described each tracking package based on a workflow centred around tracking data (i.e. spatio‐temporal locations (x, y, t)), broken down into three stages: pre‐processing, post‐processing and analysis, the latter consisting of data visualization, track description, path reconstruction, behavioural pattern identification, space use characterization, trajectory simulation and others. Supporting documentation is key to render a package accessible for users. Based on a user survey, we reviewed the quality of packages' documentation and identified 11 packages with good or excellent documentation. Links between packages were assessed through a network graph analysis. Although a large group of packages showed some degree of connectivity (either depending on functions or suggesting the use of another tracking package), one third of the packages worked in isolation, reflecting a fragmentation in the r movement‐ecology programming community. Finally, we provide recommendations for users when choosing packages, and for developers to maximize the usefulness of their contribution and strengthen the links within the programming community. The increased use of biologging devices has propelled the development of methods and software tools for analyzing tracking data. This work reviews 58 r packages for movement, acts as a road map for movement ecologists and offers recommendations for package developers from a user perspective.
Journal Article
A comprehensive analysis of autocorrelation and bias in home range estimation
by
Paviolo, Agustin
,
da Silva, Marina Xavier
,
Fagan, William F.
in
animal movement
,
animals
,
Autocorrelation
2019
Home range estimation is routine practice in ecological research. While advances in animal tracking technology have increased our capacity to collect data to support home range analysis, these same advances have also resulted in increasingly autocorrelated data. Consequently, the question of which home range estimator to use on modern, highly autocorrelated tracking data remains open. This question is particularly relevant given that most estimators assume independently sampled data. Here, we provide a comprehensive evaluation of the effects of autocorrelation on home range estimation. We base our study on an extensive data set of GPS locations from 369 individuals representing 27 species distributed across five continents. We first assemble a broad array of home range estimators, including Kernel Density Estimation (KDE) with four bandwidth optimizers (Gaussian reference function, autocorrelated-Gaussian reference function [AKDE], Silverman's rule of thumb, and least squares cross-validation), Minimum Convex Polygon, and Local Convex Hull methods. Notably, all of these estimators except AKDE assume independent and identically distributed (IID) data. We then employ half-sample cross-validation to objectively quantify estimator performance, and the recently introduced effective sample size for home range area estimation (N̂area) to quantify the information content of each data set. We found that AKDE 95% area estimates were larger than conventional IID-based estimates by a mean factor of 2. The median number of cross-validated locations included in the hold-out sets by AKDE 95% (or 50%) estimates was 95.3% (or 50.1%), confirming the larger AKDE ranges were appropriately selective at the specified quantile. Conversely, conventional estimates exhibited negative bias that increased with decreasing N̂area. To contextualize our empirical results, we performed a detailed simulation study to tease apart how sampling frequency, sampling duration, and the focal animal's movement conspire to affect range estimates. Paralleling our empirical results, the simulation study demonstrated that AKDE was generally more accurate than conventional methods, particularly for small N̂area. While 72% of the 369 empirical data sets had >1,000 total observations, only 4% had an N̂area >1,000, where 30% had an N̂area <30. In this frequently encountered scenario of small N̂area, AKDE was the only estimator capable of producing an accurate home range estimate on autocorrelated data.
Journal Article
How social network sites and other online intermediaries increase exposure to news
by
Stier, Sebastian
,
Mangold, Frank
,
Breuer, Johannes
in
BRIEF REPORTS
,
Social networks
,
Social organization
2020
Research has prominently assumed that social media and web portals that aggregate news restrict the diversity of content that users are exposed to by tailoring news diets toward the users’ preferences. In our empirical test of this argument, we apply a random-effects within–between model to two large representative datasets of individual web browsing histories. This approach allows us to better encapsulate the effects of social media and other intermediaries on news exposure. We find strong evidence that intermediaries foster more varied online news diets. The results call into question fears about the vanishing potential for incidental news exposure in digital media environments.
Journal Article
Rigorous home range estimation with movement data: a new autocorrelated kernel density estimator
by
Leimgruber, P.
,
Olson, K. A.
,
Fleming, C. H.
in
Animal Distribution - physiology
,
Animal populations
,
Animals
2015
Quantifying animals' home ranges is a key problem in ecology and has important conservation and wildlife management applications. Kernel density estimation (KDE) is a workhorse technique for range delineation problems that is both statistically efficient and nonparametric. KDE assumes that the data are independent and identically distributed (IID). However, animal tracking data, which are routinely used as inputs to KDEs, are inherently autocorrelated and violate this key assumption. As we demonstrate, using realistically autocorrelated data in conventional KDEs results in grossly underestimated home ranges. We further show that the performance of conventional KDEs actually degrades as data quality improves, because autocorrelation strength increases as movement paths become more finely resolved. To remedy these flaws with the traditional KDE method, we derive an autocorrelated KDE (AKDE) from first principles to use autocorrelated data, making it perfectly suited for movement data sets. We illustrate the vastly improved performance of AKDE using analytical arguments, relocation data from Mongolian gazelles, and simulations based upon the gazelle's observed movement process. By yielding better minimum area estimates for threatened wildlife populations, we believe that future widespread use of AKDE will have significant impact on ecology and conservation biology.
Journal Article
The importance of sample size in marine megafauna tagging studies
2019
Telemetry is a key, widely used tool to understand marine megafauna distribution, habitat use, behavior, and physiology; however, a critical question remains: “How many animals should be tracked to acquire meaningful data sets?” This question has wide-ranging implications including considerations of statistical power, animal ethics, logistics, and cost. While power analyses can inform sample sizes needed for statistical significance, they require some initial data inputs that are often unavailable. To inform the planning of telemetry and biologging studies of marine megafauna where few or no data are available or where resources are limited, we reviewed the types of information that have been obtained in previously published studies using different sample sizes. We considered sample sizes from one to >100 individuals and synthesized empirical findings, detailing the information that can be gathered with increasing sample sizes. We complement this review with simulations, using real data, to show the impact of sample size when trying to address various research questions in movement ecology of marine megafauna. We also highlight the value of collaborative, synthetic studies to enhance sample sizes and broaden the range, scale, and scope of questions that can be answered.
Journal Article