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"tree architecture"
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At home in Joshua Tree : a field guide to desert living
\"Reset, reflect, create. That's the motto at the Joshua Tree House--an irresistibly bohemian bed-and-breakfast in the storied high desert of Southern California. Guided by nature and the cycles of the sun, the Joshua Tree House offers an intentional, mindful way of living that combines the very best of the wellness movement and modern design to celebrate the singular beauty of the desert. At Home in Joshua Tree offers a peek inside this world, with Joshua Tree House founders Sara and Rich Combs bringing readers into their warm, inviting world through mindful practices that enhance the everyday. They begin by introducing life in the high desert, as well as their design principles, before moving through a day in the desert (sunrise, morning, mid-day, dusk, nightfall, etc.), with each chapter highlighting designs, recipes, wellness practices, and entertaining rituals that elevate and honor the ordinary moments associated with that time. Interviews with other designers, artists, and makers who are inspired by the desert, including those whose designs are featured throughout the Joshua Tree House, are featured throughout, alongside gorgeous full-bleed photographs and a complete sourcing guide.\"--Provided by publisher.
Quantifying branch architecture of tropical trees using terrestrial LiDAR and 3D modelling
by
Jackson, Tobias
,
Martius, Christopher
,
Bentley, Lisa Patrick
in
Adaptation
,
aerial parts
,
Agriculture
2018
Key message
A method using terrestrial laser scanning and 3D quantitative structure models opens up new possibilities to reconstruct tree architecture from tropical rainforest trees
.
Tree architecture is the three-dimensional arrangement of above ground parts of a tree. Ecologists hypothesize that the topology of tree branches represents optimized adaptations to tree’s environment. Thus, an accurate description of tree architecture leads to a better understanding of how form is driven by function. Terrestrial laser scanning (TLS) has demonstrated its potential to characterize woody tree structure. However, most current TLS methods do not describe tree architecture. Here, we examined nine trees from a Guyanese tropical rainforest to evaluate the utility of TLS for measuring tree architecture. First, we scanned the trees and extracted individual tree point clouds.
TreeQSM
was used to reconstruct woody structure through 3D quantitative structure models (QSMs). From these QSMs, we calculated: (1) length and diameter of branches > 10 cm diameter, (2) branching order and (3) tree volume. To validate our method, we destructively harvested the trees and manually measured all branches over 10 cm (279).
TreeQSM
found and reconstructed 95% of the branches thicker than 30 cm. Comparing field and QSM data, QSM overestimated branch lengths thicker than 50 cm by 1% and underestimated diameter of branches between 20 and 60 cm by 8%.
TreeQSM
assigned the correct branching order in 99% of all cases and reconstructed 87% of branch lengths and 97% of tree volume. Although these results are based on nine trees, they validate a method that is an important step forward towards using tree architectural traits based on TLS and open up new possibilities to use QSMs for tree architecture.
Journal Article
Exploring trees in three dimensions: VoxR, a novel voxel-based R package dedicated to analysing the complex arrangement of tree crowns
by
Lecigne, Bastien
,
Delagrange, Sylvain
,
Messier, Christian
in
algorithms
,
branching
,
computer software
2018
Interest in tree form assessments using the terrestrial laser scanner (TLS) has increased in recent years. Yet many existing methods are limited to small-sized trees, principally due to noise and occlusion phenomena. In this paper, a novel voxel-based program that is dedicated to the analyses of large tree structures is presented. The method is based on the assumption that architectural trait variations (i.e. branching angle, bifurcation ratio, biomass allocation, etc.) influence the way a tree explores space. This method uses the concept of space exploration that considers a voxel as a portion of space explored by the tree. Once the TLS scene is voxelized, the program provides tools that extract qualitative (geometrical) and quantitative (volumetric) metrics. These tools measure (1) voxel dispersion in three dimensions (3-D), (2) projections of the voxel cloud in 2-D and (3) multi-temporal changes within a single tree crown.
To test algorithm capabilities of measuring larger tree architectural traits, two application studies were conducted using point clouds that were either generated by a tree growth simulation model, thereby allowing algorithm application in a perfectly controlled environment, or acquired in the field with a TLS device. The space exploration concept makes it possible to take advantage of the volumetric nature of voxels to compensate for occlusion. The hypothesis that large-sized voxels can be used to reduce occlusion in the original point cloud was tested, as well as the consequences of voxel size on quantification of tree volume and on precision of derived metrics.
Results show that space exploration is well adapted to highlight architectural differences among trees. They also suggest that large-sized voxels are efficient for occlusion compensation at the expense of metrics precision in some cases. The best resolution to choose depending on the research objectives and quality of the TLS scan is discussed.
Journal Article
The importance of crown dimensions to improve tropical tree biomass estimates
by
Phillips, Oliver L.
,
Baker, Timothy R.
,
Goodman, Rosa C.
in
aboveground biomass
,
allometric theory
,
allometry
2014
Tropical forests play a vital role in the global carbon cycle, but the amount of carbon they contain and its spatial distribution remain uncertain. Recent studies suggest that once tree height is accounted for in biomass calculations, in addition to diameter and wood density, carbon stock estimates are reduced in many areas. However, it is possible that larger crown sizes might offset the reduction in biomass estimates in some forests where tree heights are lower because even comparatively short trees develop large, well-lit crowns in or above the forest canopy. While current allometric models and theory focus on diameter, wood density, and height, the influence of crown size and structure has not been well studied.
To test the extent to which accounting for crown parameters can improve biomass estimates, we harvested and weighed 51 trees (11-169 cm diameter) in southwestern Amazonia where no direct biomass measurements have been made. The trees in our study had nearly half of total aboveground biomass in the branches (44% ± 2% [mean ± SE]), demonstrating the importance of accounting for tree crowns. Consistent with our predictions, key pantropical equations that include height, but do not account for crown dimensions, underestimated the sum total biomass of all 51 trees by 11% to 14%, primarily due to substantial underestimates of many of the largest trees.
In our models, including crown radius greatly improves performance and reduces error, especially for the largest trees. In addition, over the full data set, crown radius explained more variation in aboveground biomass (10.5%) than height (6.0%). Crown form is also important: Trees with a monopodial architectural type are estimated to have 21-44% less mass than trees with other growth patterns. Our analysis suggests that accounting for crown allometry would substantially improve the accuracy of tropical estimates of tree biomass and its distribution in primary and degraded forests.
Journal Article
Linking size-dependent growth and mortality with architectural traits across 145 co-occurring tropical tree species
2014
Tree architecture, growth, and mortality change with increasing tree size and associated light conditions. To date, few studies have quantified how size-dependent changes in growth and mortality rates co-vary with architectural traits, and how such size-dependent changes differ across species and possible light capture strategies. We applied a hierarchical Bayesian model to quantify size-dependent changes in demographic rates and correlated demographic rates and architectural traits for 145 co-occurring Malaysian rain-forest tree species covering a wide range of tree sizes. Demographic rates were estimated using relative growth rate in stem diameter (RGR) and mortality rate as a function of stem diameter. Architectural traits examined were adult stature measured as the 95-percentile of the maximum stem diameter (upper diameter), wood density, and three tree architectural variables: tree height, foliage height, and crown width. Correlations between demographic rates and architectural traits were examined for stem diameters ranging from 1 to 47 cm. As a result, RGR and mortality varied significantly with increasing stem diameter across species. At smaller stem diameters, RGR was higher for tall trees with wide crowns, large upper diameter, and low wood density. Increased mortality was associated with low wood density at small diameters, and associated with small upper diameter and wide crowns over a wide range of stem diameters. Positive correlations between RGR and mortality were found over the whole range of stem diameters, but they were significant only at small stem diameters.
Associations between architectural traits and demographic rates were strongest at small stem diameters. In the dark understory of tropical rain forests, the limiting amount of light is likely to make the interspecific difference in the effects of functional traits on demography more clear. Demographic performance is therefore tightly linked with architectural traits such as adult stature, wood density, and capacity for horizontal crown expansion. The enhancement of a demographic trade-off due to interspecific variation in functional traits in the understory helps to explain species coexistence in diverse rain forests.
Journal Article
Loss of a highly conserved sterile alpha motif domain gene (WEEP) results in pendulous branch growth in peach trees
by
Tabb, Amy
,
Srinivasan, Chinnathambi
,
Dardick, Chris
in
Agricultural sciences
,
alleles
,
Amino acids
2018
Plant shoots typically grow upward in opposition to the pull of gravity. However, exceptions exist throughout the plant kingdom. Most conspicuous are trees with weeping or pendulous branches. While such trees have long been cultivated and appreciated for their ornamental value, the molecular basis behind the weeping habit is not known. Here, we characterized a weeping tree phenotype in Prunus persica (peach) and identified the underlying genetic mutation using a genomic sequencing approach. Weeping peach tree shoots exhibited a downward elliptical growth pattern and did not exhibit an upward bending in response to 90 degrees reorientation. The causative allele was found to be an uncharacterized gene, Ppa013325, having a 1.8-Kb deletion spanning the 5' end. This gene, dubbed WEEP, was predominantly expressed in phloem tissues and encodes a highly conserved 129-amino acid protein containing a sterile alpha motif (SAM) domain. Silencing WEEP in the related tree species Prunus domestica (plum) resulted in more outward, downward, and wandering shoot orientations compared to standard trees, supporting a role for WEEP in directing lateral shoot growth in trees. This previously unknown regulator of branch orientation, which may also be a regulator of gravity perception or response, provides insights into our understanding of how tree branches grow in opposition to gravity and could serve as a critical target for manipulating tree architecture for improved tree shape in agricultural and horticulture applications.
Journal Article
Tree architecture, light interception and water‐use related traits are controlled by different genomic regions in an apple tree core collection
by
Segura, Vincent
,
Coupel‐ledru, Aude
,
ApCoreStress project (INRAE-BAP department)
in
Agricultural sciences
,
Alleles
,
Apples
2022
Tree architecture shows large genotypic variability, but how this affects water-deficit responses is poorly understood. To assess the possibility of reaching ideotypes with adequate combinations of architectural and functional traits in the face of climate change, we combined high-throughput field phenotyping and genome-wide association studies (GWAS) on an apple tree (Malus domestica) core-collection. We used terrestrial light detection and ranging (T-LiDAR) scanning and airborne multispectral and thermal imagery to monitor tree architecture, canopy shape, light interception, vegetation indices and transpiration on 241 apple cultivars submitted to progressive field soil drying. GWAS was performed with single nucleotide polymorphism (SNP)-by-SNP and multi-SNP methods. Large phenotypic and genetic variability was observed for all traits examined within the collection, especially canopy surface temperature in both well-watered and water deficit conditions, suggesting control of water loss was largely genotype-dependent. Robust genomic associations revealed independent genetic control for the architectural and functional traits. Screening associated genomic regions revealed candidate genes involved in relevant pathways for each trait. We show that multiple allelic combinations exist for all studied traits within this collection. This opens promising avenues to jointly optimize tree architecture, light interception and water use in breeding strategies. Genotypes carrying favourable alleles depending on environmental scenarios and production objectives could thus be targeted.
Journal Article
Architecture of 54 moist-forest tree species: traits, trade-offs, and functional groups
by
Poorter, Lourens
,
Bongers, Laurent
,
Bongers, Frans
in
Adaptation, Physiological
,
adult tree stature
,
allometry
2006
Tree architecture is an important determinant of the height extension, light capture, and mechanical stability of trees, and it allows species to exploit the vertical height gradient in the forest canopy and horizontal light gradients at the forest floor. Tropical tree species partition these gradients through variation in adult stature ($H_{\\text{max}}$) and light demand. In this study we compare 22 architectural traits for 54 Bolivian moist-forest tree species. We evaluate how architectural traits related to$H_{\\text{max}}$vary with tree size, and we present a conceptual scheme in which we combine the two axes into four different functional groups. Interspecific correlations between architecture and$H_{\\text{max}}$varied strongly from negative to positive, depending on the reference sizes used. Stem height was positively related to$H_{\\text{max}}$at larger reference diameters (14-80 cm). Species height vs. diameter curves often flattened toward their upper ends in association with reproductive maturity for species of all sizes. Thus, adult understory trees were typically shorter than similar-diameter juveniles of larger species. Crown area was negatively correlated with$H_{\\text{max}}$at small reference heights and positively correlated at larger reference heights (15-34 m). Wide crowns allow the small understory species to intercept light over a large area at the expense of a reduced height growth. Crown length was negatively correlated with$H_{\\text{max}}$at intermediate reference heights (4-14 m). A long crown enables small understory species to maximize light interception in a light-limited environment. Light-demanding species were characterized by orthotropic stems and branches, large leaves, and a monolayer leaf arrangement. They realized an efficient height growth through the formation of narrow and shallow crowns. Light demand turned out to be a much stronger predictor of tree architecture than$H_{\\text{max}}$, probably because of the relatively low, open, and semi-evergreen canopy at the research site. The existence of four functional groups (shade-tolerant, partial-shade-tolerant, and long-and short-lived pioneer) was confirmed by the principal component and discriminant analysis. Both light demand and$H_{\\text{max}}$capture the major variation in functional traits found among tropical rain forest tree species, and the two-way classification scheme provides a straightforward model to understand niche differentiation in tropical forests.
Journal Article
Tree Species Traits Determine the Success of LiDAR-Based Crown Mapping in a Mixed Temperate Forest
by
Sanders-DeMott, Rebecca
,
Orwig, David A.
,
Basler, David
in
Automation
,
Canopies
,
Coniferous trees
2020
The ability to automatically delineate individual tree crowns using remote sensing data opens the possibility to collect detailed tree information over large geographic regions. While individual tree crown delineation (ITCD) methods have proven successful in conifer-dominated forests using Light Detection and Ranging (LiDAR) data, it remains unclear how well these methods can be applied in deciduous broadleaf-dominated forests. We applied five automated LiDAR-based ITCD methods across fifteen plots ranging from conifer- to broadleaf-dominated forest stands at Harvard Forest in Petersham, MA, USA, and assessed accuracy against manual delineation of crowns from unmanned aerial vehicle (UAV) imagery. We then identified tree- and plot-level factors influencing the success of automated delineation techniques. There was relatively little difference in accuracy between automated crown delineation methods (51–59% aggregated plot accuracy) and, despite parameter tuning, none of the methods produced high accuracy across all plots (27—90% range in plot-level accuracy). The accuracy of all methods was significantly higher with increased plot conifer fraction, and individual conifer trees were identified with higher accuracy (mean 64%) than broadleaf trees (42%) across methods. Further, while tree-level factors (e.g., diameter at breast height, height and crown area) strongly influenced the success of crown delineations, the influence of plot-level factors varied. The most important plot-level factor was species evenness, a metric of relative species abundance that is related to both conifer fraction and the degree to which trees can fill canopy space. As species evenness decreased (e.g., high conifer fraction and less efficient filling of canopy space), the probability of successful delineation increased. Overall, our work suggests that the tested LiDAR-based ITCD methods perform equally well in a mixed temperate forest, but that delineation success is driven by forest characteristics like functional group, tree size, diversity, and crown architecture. While LiDAR-based ITCD methods are well suited for stands with distinct canopy structure, we suggest that future work explore the integration of phenology and spectral characteristics with existing LiDAR as an approach to improve crown delineation in broadleaf-dominated stands.
Journal Article
Variation in xylem structure and function in stems and roots of trees to 20 m depth
by
Jackson, R.B
,
McElrone, A.J
,
Martinez-Vilalta, J
in
Biological and medical sciences
,
Bumelia lanuginosa
,
Caves
2004
• To assess hydraulic architecture and limitations to water transport across whole trees, we compared xylem anatomy, vulnerability to cavitation (Ψ50) and specific hydraulic conductivity (Ks) of stems, shallow roots and deep roots (from caves to 20 m depth) for four species: Juniperus ashei, Bumelia lanuginosa, Quercus fusiformis and Quercus sinuata. • Mean, maximum and hydraulically weighted (Dh) conduit diameters and Kswere largest in deep roots, intermediate in shallow roots, and smallest in stems (P < 0.05 for each). Mean vessel diameters of deep roots were 2.1-4.2-fold greater than in stems, and Kswas seven to 38 times larger in the deep roots. • Ψ50also increased from stems to roots with depth, as much as 24-fold from stems to deep roots in B. lanuginosa. For all species together, Ψ50was positively correlated with both Dhand Ks, suggesting a potential trade-off exists between conducting efficiency and safety. • The anatomical and hydraulic differences documented here suggest that the structure of deep roots minimizes flow resistance and maximizes deep water uptake.
Journal Article