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Accurate automated segmentation of remote sensing data could benefit applications from land cover mapping and agricultural monitoring to urban development surveyal and disaster damage assessment. While convolutional neural networks (CNNs) achieve state-of-the-art accuracy when segmenting natural images with huge labeled datasets, their successful translation to remote sensing tasks has been limited by low quantities of ground truth labels, especially fully segmented ones, in the remote sensing domain. In this work, we perform cropland segmentation using two types of labels commonly found in remote sensing datasets that can be considered sources of “weak supervision”: (1) labels comprised of single geotagged points and (2) image-level labels. We demonstrate that (1) a U-Net trained on a single labeled pixel per image and (2) a U-Net image classifier transferred to segmentation can outperform pixel-level algorithms such as logistic regression, support vector machine, and random forest. While the high performance of neural networks is well-established for large datasets, our experiments indicate that U-Nets trained on weak labels outperform baseline methods with as few as 100 labels. Neural networks, therefore, can combine superior classification performance with efficient label usage, and allow pixel-level labels to be obtained from image labels.

Existing salient instance detection (SID) methods typically learn from pixel-level annotated datasets. In this paper, we present the first weakly-supervised approach to the SID problem. Although weak supervision has been considered in general saliency detection, it is mainly based on using class labels for object localization. However, it is non-trivial to use only class labels to learn instance-aware saliency information, as salient instances with high semantic affinities may not be easily separated by the labels. As the subitizing information provides an instant judgement on the number of salient items, it is naturally related to detecting salient instances and may help separate instances of the same class while grouping different parts of the same instance. Inspired by this observation, we propose to use class and subitizing labels as weak supervision for the SID problem. We propose a novel weakly-supervised network with three branches: a Saliency Detection Branch leveraging class consistency information to locate candidate objects; a Boundary Detection Branch exploiting class discrepancy information to delineate object boundaries; and a Centroid Detection Branch using subitizing information to detect salient instance centroids. This complementary information is then fused to produce a salient instance map. To facilitate the learning process, we further propose a progressive training scheme to reduce label noise and the corresponding noise learned by the model, via reciprocating the model with progressive salient instance prediction and model refreshing. Our extensive evaluations show that the proposed method plays favorably against carefully designed baseline methods adapted from related tasks.

The performance of deep learning-based natural language processing systems is based on large amounts of labeled training data which, in the clinical domain, are not easily available or affordable. Weak supervision and in-context learning offer partial solutions to this issue, particularly using large language models (LLMs), but their performance still trails traditional supervised methods with moderate amounts of gold-standard data. In particular, inferencing with LLMs is computationally heavy. We propose an approach leveraging fine-tuning LLMs and weak supervision with virtually no domain knowledge that still achieves consistently dominant performance. Using a prompt-based approach, the LLM is used to generate weakly-labeled data for training a downstream BERT model. The weakly supervised model is then further fine-tuned on small amounts of gold standard data. We evaluate this approach using Llama2 on three different i2b2/ n2c2 datasets for clinical named entity recognition. With no more than 10 gold standard notes, our final BERT models weakly supervised by fine-tuned Llama2-13B consistently outperformed out-of-the-box PubMedBERT by 4.7–47.9% in F1 scores. With only 50 gold standard notes, our models achieved close performance to fully fine-tuned systems.

Background Databases are fundamental to advance biomedical science. However, most of them are populated and updated with a great deal of human effort. Biomedical Relation Extraction (BioRE) aims to shift this burden to machines. Among its different applications, the discovery of Gene-Disease Associations (GDAs) is one of BioRE most relevant tasks. Nevertheless, few resources have been developed to train models for GDA extraction. Besides, these resources are all limited in size—preventing models from scaling effectively to large amounts of data. Results To overcome this limitation, we have exploited the DisGeNET database to build a large-scale, semi-automatically annotated dataset for GDA extraction. DisGeNET stores one of the largest available collections of genes and variants involved in human diseases. Relying on DisGeNET, we developed TBGA: a GDA extraction dataset generated from more than 700K publications that consists of over 200K instances and 100K gene-disease pairs. Each instance consists of the sentence from which the GDA was extracted, the corresponding GDA, and the information about the gene-disease pair. Conclusions TBGA is amongst the largest datasets for GDA extraction. We have evaluated state-of-the-art models for GDA extraction on TBGA, showing that it is a challenging and well-suited dataset for the task. We made the dataset publicly available to foster the development of state-of-the-art BioRE models for GDA extraction.

Background Panicle density of cereal crops such as wheat and sorghum is one of the main components for plant breeders and agronomists in understanding the yield of their crops. To phenotype the panicle density effectively, researchers agree there is a significant need for computer vision-based object detection techniques. Especially in recent times, research in deep learning-based object detection shows promising results in various agricultural studies. However, training such systems usually requires a lot of bounding-box labeled data. Since crops vary by both environmental and genetic conditions, acquisition of huge amount of labeled image datasets for each crop is expensive and time-consuming. Thus, to catalyze the widespread usage of automatic object detection for crop phenotyping, a cost-effective method to develop such automated systems is essential. Results We propose a point supervision based active learning approach for panicle detection in cereal crops. In our approach, the model constantly interacts with a human annotator by iteratively querying the labels for only the most informative images, as opposed to all images in a dataset. Our query method is specifically designed for cereal crops which usually tend to have panicles with low variance in appearance. Our method reduces labeling costs by intelligently leveraging low-cost weak labels (object centers) for picking the most informative images for which strong labels (bounding boxes) are required. We show promising results on two publicly available cereal crop datasets—Sorghum and Wheat. On Sorghum, 6 variants of our proposed method outperform the best baseline method with more than 55% savings in labeling time. Similarly, on Wheat, 3 variants of our proposed methods outperform the best baseline method with more than 50% of savings in labeling time. Conclusion We proposed a cost effective method to train reliable panicle detectors for cereal crops. A low cost panicle detection method for cereal crops is highly beneficial to both breeders and agronomists. Plant breeders can obtain quick crop yield estimates to make important crop management decisions. Similarly, obtaining real time visual crop analysis is valuable for researchers to analyze the crop’s response to various experimental conditions.

For short text classification, insufficient labeled data, data sparsity, and imbalanced classification have become three major challenges. For this, we proposed multiple weak supervision, which can label unlabeled data automatically. Different from prior work, the proposed method can generate probabilistic labels through conditional independent model. What’s more, experiments were conducted to verify the effectiveness of multiple weak supervision. According to experimental results on public dadasets, real datasets and synthetic datasets, unlabeled imbalanced short text classification problem can be solved effectively by multiple weak supervision. Notably, without reducing precision, recall, and F1-score can be improved by adding distant supervision clustering, which can be used to meet different application needs.

Weakly supervised video anomaly detection aims to detect anomalous events with only video-level labels. In the absence of boundary information for anomaly segments, most existing methods rely on multiple instance learning. In these approaches, the predictions for unlabeled video snippets are guided by the classification of labeled untrimmed videos. However, these methods do not account for issues such as video blur and visual occlusion, which can hinder accurate anomaly detection. To address these issues, we propose a novel weakly supervised video anomaly detection method that fuses multimodal and multiscale features. Firstly, RGB and optical flow snippets are input into pre-trained I3D to extract appearance and motion features. Then, we introduce an Attention De-redundancy (AD) module, which employs an attention mechanism to filter out task-irrelevant redundancy in these appearance and motion features. Next, to mitigate the effects of video blurring and visual occlusion, we propose a Multi-scale Feature Learning module. This module captures long-term and short-term temporal dependencies among video snippets to provide global and local guidance for blurred or occluded video snippets. Finally, to effectively utilize the discriminative features of different modalities, we propose an Adaptive Feature Fusion module. This module adaptively fuses appearance and motion features based on their respective feature weights. Extensive experimental results demonstrate that our proposed method outperforms mainstream unsupervised and weakly supervised methods in terms of AUC. Specifically, our proposed method achieves 97.00% AUC and 85.31% AUC on two benchmark datasets, i.e., ShanghaiTech and UCF-Crime, respectively.

Current weakly supervised salient object detection (SOD) methods for RGB-D images mostly rely on image-level labels and sparse annotations, which makes it difficult to completely contour object boundaries in complex scenes, especially when detecting objects with filamentary structures. To address the aforementioned issues, we propose a novel cross-modal weakly supervised SOD framework. The framework can adequately exploit the advantages of cross-modal weak labels to generate high-quality pseudo-labels, and it can fully couple the multi-scale features of RGB and depth images for precise saliency prediction. The framework mainly consists of a cross-modal pseudo-label generation network (CPGN) and an asymmetric salient-region prediction network (ASPN). Among them, the CPGN is proposed to sufficiently leverage the precise pixel-level guidance provided by point labels and the enhanced semantic supervision provided by text labels to generate high-quality pseudo-labels, which are used to supervise the subsequent training of the ASPN. To better capture the contextual information and geometric features from RGB and depth images, the ASPN, an asymmetrically progressive network, is proposed to gradually extract multi-scale features from RGB and depth images by using the Swin-Transformer and CNN encoders, respectively. This significantly enhances the model’s ability to perceive detailed structures. Additionally, an edge constraint module (ECM) is designed to sharpen the edges of the predicted salient regions. The experimental results demonstrate that the method shows better performance in depicting salient objects, especially the filamentary structures, than other weakly supervised SOD methods.

Medical image annotation is a major hurdle for developing precise and robust machine-learning models. Annotation is expensive, time-consuming, and often requires expert knowledge, particularly in the medical field. Here, we suggest using minimal user interaction in the form of extreme point clicks to train a segmentation model which, in effect, can be used to speed up medical image annotation. An initial segmentation is generated based on the extreme points using the random walker algorithm. This initial segmentation is then used as a noisy supervision signal to train a fully convolutional network that can segment the organ of interest, based on the provided user clicks. Through experimentation on several medical imaging datasets, we show that the predictions of the network can be refined using several rounds of training with the prediction from the same weakly annotated data. Further improvements are shown using the clicked points within a custom-designed loss and attention mechanism. Our approach has the potential to speed up the process of generating new training datasets for the development of new machine-learning and deep-learning-based models for, but not exclusively, medical image analysis.

Parkinson’s disease (PD) is characterized by motor symptoms, with key diagnostic features, such as rigidity, traditionally assessed through subjective clinical scales. This study proposes a novel hybrid framework integrating model-driven biomechanical features (damping ratio, decay rate) and data-driven statistical features (maximum detail coefficient) from wearable sensor data during a modified pendulum test to quantify shoulder girdle rigidity objectively. Using weak supervision, these features were unified to generate robust labels from limited data, achieving a 10% improvement in PD/healthy control classification accuracy (0.71 vs. 0.64) over data-driven methods and matching model-driven performance (0.70). The damping ratio and decay rate, aligning with Wartenberg pendulum test metrics like relaxation index, revealed velocity-dependent aspects of rigidity, challenging its clinical characterization as velocity-independent. Outputs correlated strongly with UPDRS rigidity scores (r = 0.78, p < 0.001), validating their clinical utility as novel biomechanical biomarkers. This framework enhances interpretability and scalability, enabling remote, objective rigidity assessment for early diagnosis and telemedicine, advancing PD management through innovative sensor-based neurotechnology.