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The different meanings of tolerating the gut microbiome
by
Vidal, Vinicius Mendes
, Canto, Fábio B.
, Bozza, Marcelo Torres
, Montes-Cobos, Elena
in
Animals
/ Bacterial-Eukaryotic Interactions
/ Eukaryotic Microbiology
/ Gastrointestinal Microbiome - immunology
/ gastrointestinal tract
/ Gut Immunity
/ Gut Microbiota
/ Host Immune Responses to Bacteria
/ Host Microbial Interactions - immunology
/ Host-Associated Microbiota
/ Host-Microbial Interactions
/ Host-Microbiome Interactions
/ Humans
/ Immune System Modulation by Microbiota
/ Immune Tolerance
/ Immunity, Innate
/ Intestinal Barrier Function
/ Intestinal Immunity
/ Intestinal Mucosa - immunology
/ Intestinal Mucosa - microbiology
/ Mechanisms of Host-Microbiome Communication
/ Microbial Ecology and Evolution
/ Microbial Pathogenesis and Immunology
/ microbiome
/ Microbiome and Barrier Function
/ Microbiome Research
/ Minireview
/ Mucosal Immunity
/ Mucosal Microbiota and Immune Interactions
/ T-Lymphocytes, Regulatory - immunology
/ tolerance
/ Tregs
2026
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The different meanings of tolerating the gut microbiome
by
Vidal, Vinicius Mendes
, Canto, Fábio B.
, Bozza, Marcelo Torres
, Montes-Cobos, Elena
in
Animals
/ Bacterial-Eukaryotic Interactions
/ Eukaryotic Microbiology
/ Gastrointestinal Microbiome - immunology
/ gastrointestinal tract
/ Gut Immunity
/ Gut Microbiota
/ Host Immune Responses to Bacteria
/ Host Microbial Interactions - immunology
/ Host-Associated Microbiota
/ Host-Microbial Interactions
/ Host-Microbiome Interactions
/ Humans
/ Immune System Modulation by Microbiota
/ Immune Tolerance
/ Immunity, Innate
/ Intestinal Barrier Function
/ Intestinal Immunity
/ Intestinal Mucosa - immunology
/ Intestinal Mucosa - microbiology
/ Mechanisms of Host-Microbiome Communication
/ Microbial Ecology and Evolution
/ Microbial Pathogenesis and Immunology
/ microbiome
/ Microbiome and Barrier Function
/ Microbiome Research
/ Minireview
/ Mucosal Immunity
/ Mucosal Microbiota and Immune Interactions
/ T-Lymphocytes, Regulatory - immunology
/ tolerance
/ Tregs
2026
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Do you wish to request the book?
The different meanings of tolerating the gut microbiome
by
Vidal, Vinicius Mendes
, Canto, Fábio B.
, Bozza, Marcelo Torres
, Montes-Cobos, Elena
in
Animals
/ Bacterial-Eukaryotic Interactions
/ Eukaryotic Microbiology
/ Gastrointestinal Microbiome - immunology
/ gastrointestinal tract
/ Gut Immunity
/ Gut Microbiota
/ Host Immune Responses to Bacteria
/ Host Microbial Interactions - immunology
/ Host-Associated Microbiota
/ Host-Microbial Interactions
/ Host-Microbiome Interactions
/ Humans
/ Immune System Modulation by Microbiota
/ Immune Tolerance
/ Immunity, Innate
/ Intestinal Barrier Function
/ Intestinal Immunity
/ Intestinal Mucosa - immunology
/ Intestinal Mucosa - microbiology
/ Mechanisms of Host-Microbiome Communication
/ Microbial Ecology and Evolution
/ Microbial Pathogenesis and Immunology
/ microbiome
/ Microbiome and Barrier Function
/ Microbiome Research
/ Minireview
/ Mucosal Immunity
/ Mucosal Microbiota and Immune Interactions
/ T-Lymphocytes, Regulatory - immunology
/ tolerance
/ Tregs
2026
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Journal Article
The different meanings of tolerating the gut microbiome
2026
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Overview
Multicellular life arose in a world dominated by microorganisms, a reality that has imposed a constant and pervasive selective pressure on all subsequent complex organisms. The immune system has been historically defined by its role in pathogen clearance through resistance mechanisms. However, a complementary and equally critical strategy is to enable the peaceful and inevitable coexistence with microorganisms, allowing each host species to shelter a unique associated microbiome. The term tolerance holds multiple meanings in immunology, yet all underlie a balanced and cooperative host-microorganism relationship. Each represents a different aspect of how the immune system limits tissue damage while maintaining functionality in the presence of microbial or inflammatory stimuli. Using the intestinal mucosa as a paradigm, we explore how epithelial barrier integrity, toxin neutralization, tissue repair, and stress response underpin disease tolerance; how microbial exposure calibrates innate immunity via epigenetic and metabolic reprogramming (LPS tolerance); and how the gut microenvironment fosters the generation of tolerogenic antigen-presenting cells and microbe-specific regulatory T cells to enforce immunological tolerance. We further explore how the microbiota itself is a potent inducer of these tolerogenic pathways and highlight IL-10 as a major hub, connecting different tolerogenic circuits. Finally, we examine the hygiene hypothesis, arguing that lifestyle changes during the Anthropocene disrupt these finely tuned tolerance mechanisms, thereby contributing to the rising incidence of immune-mediated diseases. We posit that these tolerance programs are fundamental prerequisites for engendering host-microbiota symbiosis, a relationship forged over millennia of co-evolution and endangered in the contemporary world.
Publisher
American Society for Microbiology,American Society for Microbiology (ASM)
Subject
/ Bacterial-Eukaryotic Interactions
/ Gastrointestinal Microbiome - immunology
/ Host Immune Responses to Bacteria
/ Host Microbial Interactions - immunology
/ Host-Microbiome Interactions
/ Humans
/ Immune System Modulation by Microbiota
/ Intestinal Mucosa - immunology
/ Intestinal Mucosa - microbiology
/ Mechanisms of Host-Microbiome Communication
/ Microbial Ecology and Evolution
/ Microbial Pathogenesis and Immunology
/ Microbiome and Barrier Function
/ Mucosal Microbiota and Immune Interactions
/ T-Lymphocytes, Regulatory - immunology
/ Tregs
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