Paper

Depleting cationic lipids involved in antimicrobial resistance drives adaptive lipid remodeling in Enterococcus faecalis

Morley, Stewart A, Cazenave-Gassiot, Amaury, Shu-Sin Chng, Kelvin Kian Long Chong, Kline, Kimberly A, Rashid, Rafi, Chen, Swaine L, Hao Chia, Dominic Ming, Wenk, Markus R, Nair, Zeus Jaren, Allen, Doug K

2022

Overview

The bacterial cell membrane is an interface for cell envelope synthesis, protein secretion, virulence factor assembly and a target for host cationic antimicrobial peptides (CAMPs). To resist CAMP killing, several Gram-positive pathogens encode the multiple peptide resistance factor (MprF) enzyme that covalently attaches cationic amino acids to anionic phospholipids in the cell membrane. While E. faecalis encodes two mprF paralogs, MprF2 plays a dominant role in conferring resistance to killing by the CAMP human beta-defensin 2 (hBD-2) in E. faecalis strain OG1RF. The goal of the current study is to understand the broader lipidomic and functional roles of E. faecalis mprF. We analyzed the lipid profiles of parental wild type and mprF mutant strains and show that while delta mprF2 and delta mprF1 delta mprF2 mutants completely lacked cationic lysyl-phosphatidylglycerol (L-PG), the delta mprF1 mutant synthesized ~70% of L-PG compared to the parent. Unexpectedly, we also observed a significant reduction of PG in delta mprF2 and delta mprF1 delta mprF2. In the mprF mutants, particularly delta mprF1 delta mprF2, the decrease in L-PG and PG is compensated by an increase in the phosphorus-containing lipid, GPDGDAG, and D-ala-GPDGDAG. These changes were accompanied by a downregulation of de novo fatty acid biosynthesis and an accumulation of long-chain acyl-acyl carrier proteins (long-chain acyl-ACPs), suggesting that the suppression of fatty acid biosynthesis was mediated by the transcriptional repressor FabT. Growth in chemically defined media lacking fatty acids revealed severe growth defects in the delta mprF1 delta mprF2 mutant strain, but not the single mutants, which was partially rescued through supplementation with palmitic and stearic acids. Changes in lipid homeostasis correlated with lower membrane fluidity, impaired protein secretion, and increased biofilm formation in both delta mprF2 and delta mprF1 delta mprF2, compared to wild type and delta mprF1. Collectively, our findings reveal a previously unappreciated role for mprF in global lipid regulation and cellular physiology, which could facilitate the development of novel therapeutics targeting MprF.Competing Interest StatementThe authors have declared no competing interest.

• Publisher: Cold Spring Harbor Laboratory Press,Cold Spring Harbor Laboratory
• Subject: Antimicrobial agents / Antimicrobial peptides / Antimicrobial resistance / Biofilms / Biosynthesis / Cationic antimicrobial peptides / Cell membranes / Defensins / Drug development / Fatty acids / Fluidity / Homeostasis / Lipids / Membrane fluidity / Membrane proteins / Microbiology / Mutants / Phosphatidylglycerol / Phospholipids / Phosphorus / Protein biosynthesis / Secretion / Supplements / Virulence factors