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Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay

by Miller, Steve , Simon, Paul , Puschnik, Andreas , Bell, John , Bhatt, Karan D , Crawford, Emily Dawn , Neff, Norma , Ahyong, Vida , Batson, Joshua , Mann, Sabrina A , Kamm, Jack , Wu, Wesley , Tato, Cristina M , Ayscue, Patrick , Si Noon Hong , Dynerman, David , Consortium, Cliahub , Kistler, Amy , Chan, Lienna Y , Detweiler, Angela M , Bell, Sidney M , Nguyen, Minh Phuong , Espinosa, Alex , Vanaerschot, Manu , Tan, Michelle , Wadford, Debra A , Derisi, Joseph L , Webber, James T

in Epidemiology / Gene polymorphism / Molecular Biology / N gene / Pathogenicity / Polymerase chain reaction / Severe acute respiratory syndrome coronavirus 2

2020

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Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay

in Epidemiology / Gene polymorphism / Molecular Biology / N gene / Pathogenicity / Polymerase chain reaction / Severe acute respiratory syndrome coronavirus 2

2020

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Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay

in Epidemiology / Gene polymorphism / Molecular Biology / N gene / Pathogenicity / Polymerase chain reaction / Severe acute respiratory syndrome coronavirus 2

2020

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Paper

Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay

Miller, Steve,

Simon, Paul,

Puschnik, Andreas,

Bell, John,

Bhatt, Karan D,

Crawford, Emily Dawn,

Neff, Norma,

Ahyong, Vida,

Batson, Joshua,

Mann, Sabrina A,

Kamm, Jack,

Wu, Wesley,

Tato, Cristina M,

Ayscue, Patrick,

Si Noon Hong,

Dynerman, David,

Consortium, Cliahub,

Kistler, Amy,

Chan, Lienna Y,

Detweiler, Angela M,

Bell, Sidney M,

Nguyen, Minh Phuong,

Espinosa, Alex,

Vanaerschot, Manu,

Tan, Michelle,

Wadford, Debra A,

Derisi, Joseph L,

Webber, James T

2020

Overview

We identify a mutation in the N gene of SARS-CoV-2 that adversely affects annealing of a commonly used RT-PCR primer; epidemiologic evidence suggests the virus retains pathogenicity and competence for spread. This reinforces the importance of using multiple targets for robust SARS-CoV-2 detection. Competing Interest Statement The authors have declared no competing interest.

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Publisher

Cold Spring Harbor Laboratory Press,Cold Spring Harbor Laboratory

Subject

/ N gene

/ Polymerase chain reaction

/ Severe acute respiratory syndrome coronavirus 2