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De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences
by
Acar, Omer
, Mclysaght, Aoife
, S Branden Van Oss
, Wacholder, Aaron
, Camacho, Carlos J
, Anne-Ruxandra Carvunis
, Vakirlis, Nikolaos
, Ianotta, John
, Medetgul-Ernar, Kate
, Hsu, Brian
, Ideker, Trey
, Nelson Castilho Coelho
, O'donnell, Allyson F
in
Evolutionary Biology
/ Genomes
/ Membrane proteins
/ Natural selection
/ Polypeptides
/ Reproductive fitness
/ Thymine
/ Translation
/ Transmembrane domains
2019
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De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences
by
Acar, Omer
, Mclysaght, Aoife
, S Branden Van Oss
, Wacholder, Aaron
, Camacho, Carlos J
, Anne-Ruxandra Carvunis
, Vakirlis, Nikolaos
, Ianotta, John
, Medetgul-Ernar, Kate
, Hsu, Brian
, Ideker, Trey
, Nelson Castilho Coelho
, O'donnell, Allyson F
in
Evolutionary Biology
/ Genomes
/ Membrane proteins
/ Natural selection
/ Polypeptides
/ Reproductive fitness
/ Thymine
/ Translation
/ Transmembrane domains
2019
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De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences
by
Acar, Omer
, Mclysaght, Aoife
, S Branden Van Oss
, Wacholder, Aaron
, Camacho, Carlos J
, Anne-Ruxandra Carvunis
, Vakirlis, Nikolaos
, Ianotta, John
, Medetgul-Ernar, Kate
, Hsu, Brian
, Ideker, Trey
, Nelson Castilho Coelho
, O'donnell, Allyson F
in
Evolutionary Biology
/ Genomes
/ Membrane proteins
/ Natural selection
/ Polypeptides
/ Reproductive fitness
/ Thymine
/ Translation
/ Transmembrane domains
2019
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De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences
Paper
De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences
2019
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Overview
Recent evidence demonstrates that novel protein-coding genes can arise de novo from intergenic loci. This evolutionary innovation is thought to be facilitated by the pervasive translation of intergenic transcripts, which exposes a reservoir of variable polypeptides to natural selection. Do intergenic translation events yield polypeptides with useful biochemical capacities? The answer to this question remains controversial. Here, we systematically characterized how de novo emerging coding sequences impact fitness. In budding yeast, overexpression of these sequences was enriched in beneficial effects, while their disruption was generally inconsequential. We found that beneficial emerging sequences have a strong tendency to encode putative transmembrane proteins, which appears to stem from a cryptic propensity for transmembrane signals throughout thymine-rich intergenic regions of the genome. These findings suggest that novel genes with useful biochemical capacities, such as transmembrane domains, tend to evolve de novo within intergenic loci that already harbored a blueprint for these capacities.
Publisher
Cold Spring Harbor Laboratory Press,Cold Spring Harbor Laboratory
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