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A Genomic Regulatory Network for Development

by Arnone, Maria I. , Hinman, Veronica , Bolouri, Hamid , Rowen, Lee , Livi, Carolina B. , Revilla, Roger , Arenas-Mena, César , Lee, Pei Yun , Oliveri, Paola , Calestani, Cristina , Minokawa, Takuya , Ransick, Andrew , Hood, Leroy , Otim, Ochan , Peter J. C. Clarke , Yuh, Chiou-Hwa , Davidson, Eric H. , Cameron, R. Andrew , McClay, David R. , Amore, Gabriele , Brown, C. Titus , Pan, Zheng jun , Rast, Jonathan P. , Schilstra, Maria J. , Rust, Alistair G.

in Animals / Cell Lineage / Cells / Computational Biology / Developmental genetics / Embryology / Embryonic cells / Embryonic Development / Embryos / Endoderm / Endoderm - cytology / Endoderm - physiology / Gene Expression Profiling / Gene Expression Regulation, Developmental / Genes / Genes, Regulator / Genetic regulation / Genetic transcription / Genome / Genomes / Genomics / Information Processing / Life Sciences (General) / Logical Thinking / Mesoderm / Mesoderm - cytology / Mesoderm - physiology / Messenger RNA / Models, Biological / Models, Genetic / Morphogenesis / Networks / Regulation / Regulatory Sequences, Nucleic Acid / Reviews / Sea Urchins - embryology / Sea Urchins - genetics / Stem Cells - physiology / Systems Theory / Transcription (Genetics) / Transcription factors

2002

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2002

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2002

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Journal Article

A Genomic Regulatory Network for Development

Arnone, Maria I.,

Hinman, Veronica,

Bolouri, Hamid,

Rowen, Lee,

Livi, Carolina B.,

Revilla, Roger,

Arenas-Mena, César,

Lee, Pei Yun,

Oliveri, Paola,

Calestani, Cristina,

Minokawa, Takuya,

Ransick, Andrew,

Hood, Leroy,

Otim, Ochan,

Peter J. C. Clarke,

Yuh, Chiou-Hwa,

Davidson, Eric H.,

Cameron, R. Andrew,

McClay, David R.,

Amore, Gabriele,

Brown, C. Titus,

Pan, Zheng jun,

Rast, Jonathan P.,

Schilstra, Maria J.,

Rust, Alistair G.

2002

Overview

Development of the body plan is controlled by large networks of regulatory genes. A gene regulatory network that controls the specification of endoderm and mesoderm in the sea urchin embryo is summarized here. The network was derived from large-scale perturbation analyses, in combination with computational methodologies, genomic data, cis-regulatory analysis, and molecular embryology. The network contains over 40 genes at present, and each node can be directly verified at the DNA sequence level by cis-regulatory analysis. Its architecture reveals specific and general aspects of development, such as how given cells generate their ordained fates in the embryo and why the process moves inexorably forward in developmental time.

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Publisher

American Society for the Advancement of Science,American Association for the Advancement of Science,The American Association for the Advancement of Science

Subject

Animals

/ Cell Lineage

/ Cells

/ Computational Biology

/ Developmental genetics

/ Embryology

/ Embryonic cells

/ Embryonic Development

/ Embryos

/ Endoderm

/ Endoderm - cytology